Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18080 Brassica napus
A08p33140 Brassica napus
Aa31LG1G2780 Aethionema arabicum
Aa31LG5G12090 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3526 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.861 Anthoceros agrestis
Actinidia02348 Actinidia chinensis
Actinidia26892 Actinidia chinensis
Actinidia32266 Actinidia chinensis
AL1G23140 Arabidopsis lyrata
AL7G25980 Arabidopsis lyrata
Aqoxy1G03057 Aquilegia oxysepala
Aqoxy3G01941 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1NGT21 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.76HGU1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D3Y9BL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GQ4J3V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NXRU0F Arachis hypogaea
AT1G11930 Arabidopsis thaliana
AT4G26860 Arabidopsis thaliana
ATR0681G366 Amborella trichopoda
AUR62015830 Chenopodium quinoa
AUR62020389 Chenopodium quinoa
AUR62042999 Chenopodium quinoa
BcaB03g13217 Brassica carinata
BcaB03g16357 Brassica carinata
BcaC01g00471 Brassica carinata
BcaNung03558 Brassica carinata
BolC1t00986H Brassica oleracea
BolC1t01518H Brassica oleracea
BolC1t02238H Brassica oleracea
BolC8t49138H Brassica oleracea
BraA01t01763Z Brassica rapa
BraA08t35232Z Brassica rapa
C01p15650 Brassica napus
C01p23040 Brassica napus
C08p15080 Brassica napus
CAN.G1014.31 Capsicum annuum
CAN.G103.9 Capsicum annuum
CANSAT11G0480 Cannabis sativa
CANSAT56G2494 Cannabis sativa
CARHR012280 Cardamine hirsuta
CARHR234480 Cardamine hirsuta
Carub.0001s1163 Capsella rubella
Carub.0007s1398 Capsella rubella
Ca_00683_v3 Cicer arietinum L.
Ca_26140_v3 Cicer arietinum L.
CBR_g51397 Chara braunii
Cc05_g14050 Coffea canephora
Cc05_g14060 Coffea canephora
Cc09_g01350 Coffea canephora
CDE02G2347 Ceratophyllum demersum
CDE02G3567 Ceratophyllum demersum
CDE08G0473 Ceratophyllum demersum
Cfa000178 Carpinus fangiana
Cfa020306 Carpinus fangiana
Ciclev10009301m.g Citrus clementina
Ciclev10016262m.g Citrus clementina
CiPaw.09G096500 Carya illinoinensis
CiPaw.11G192500 Carya illinoinensis
ClCG01G021740 Citrullus lanatus
ClCG10G005020 Citrullus lanatus
COL.COLO4_09697 Corchorus olitorius
COL.COLO4_31816 Corchorus olitorius
Cpa.g.sc12.270 Carica papaya
Cpa.g.sc152.43 Carica papaya
Cre01.g010848 Chlamydomonas reinhardtii
CsaV3_3G004700 Cucumis sativus L.
CsaV3_6G048790 Cucumis sativus L.
CSS0002090 Camellia sinensis var. sinensis
CSS0017422 Camellia sinensis var. sinensis
DCAR_023938 Daucus carota
DCAR_028228 Daucus carota
Dinv20090 Davidia involucrata
Dinv22246 Davidia involucrata
Duzib192G0781 Durio zibethinus
Duzib213G0624 Durio zibethinus
Duzib235G0838 Durio zibethinus
ECA236G1145 Erigeron canadensis
ECA248G1866 Erigeron canadensis
EL10Ac4g07757 Beta vulgaris
EL10Ac8g19386 Beta vulgaris
Eucgr.E04000 Eucalyptus grandis
Eucgr.E04004 Eucalyptus grandis
Eucgr.E04006 Eucalyptus grandis
Eucgr.F00723 Eucalyptus grandis
Eucgr.L03573 Eucalyptus grandis
FAN11G1227 Fragaria x ananassa
FAN16G0187 Fragaria x ananassa
FAN21G1600 Fragaria x ananassa
FAN25G1151 Fragaria x ananassa
FvH4_3g01630 Fragaria vesca
FvH4_3g23210 Fragaria vesca
Glyma.08G319900 Glycine max
Glyma.09G006300 Glycine max
Glyma.15G110700 Glycine max
Glyma.18G092500 Glycine max
Gohir.A04G012900 Gossypium hirsutum
Gohir.A06G150200 Gossypium hirsutum
Gohir.D05G373051 Gossypium hirsutum
Gohir.D06G156400 Gossypium hirsutum
Gorai.009G441700 Gossypium raimondii
Gorai.010G182800 Gossypium raimondii
GSVIVG01012671001 Vitis vinifera
GSVIVG01037694001 Vitis vinifera
HanXRQChr01g0006461 Helianthus annuus
HanXRQChr04g0098581 Helianthus annuus
HanXRQChr09g0265551 Helianthus annuus
HanXRQChr16g0524051 Helianthus annuus
Haze_06841 Corylus avellana
Haze_09715 Corylus avellana
Haze_26702 Corylus avellana
Haze_27627 Corylus avellana
Hma1.2p1_0091F.1_g046580 Hydrangea macrophylla
Hma1.2p1_2862F.1_g329560 Hydrangea macrophylla
HPP92_005297 Vanilla planifolia
HPP92_008158 Vanilla planifolia
HPP92_008207 Vanilla planifolia
Hund23422 Selenicereus undatus
Hund23469 Selenicereus undatus
Lalb_Chr15g0081521 Lupinus albus
Lalb_Chr20g0118881 Lupinus albus
Lj1A1234T48 Lonicera japonica
Lj6g0002679 Lotus japonicus
Lj6g0008738 Lotus japonicus
Lj8C171G3 Lonicera japonica
Lsat_1_v5_gn_1_129281 Lactuca sativa
Lsat_1_v5_gn_7_114400 Lactuca sativa
Manes.03G133400 Manihot esculenta
Manes.16G003500 Manihot esculenta
Mapoly0019s0022 Marchantia polymorpha
MBI07_g38685_MAGBIO Magnolia biondii
MBI07_g40189_MAGBIO Magnolia biondii
MBI10_g29398_MAGBIO Magnolia biondii
MBI10_g47721_MAGBIO Magnolia biondii
MCO04G161 Micromonas commoda
MD00G1035100 Malus domestica
MD03G1196600 Malus domestica
MD05G1350700 Malus domestica
MD10G1325400 Malus domestica
Medtr2g024060 Medicago truncatula
Medtr3g053230 Medicago truncatula
MELO3C007412.2 Cucumis melo
MELO3C014168.2 Cucumis melo
Migut.H01583 Erythranthe guttata
Migut.M01735 Erythranthe guttata
MSTRG.14633 Avicennia marina
MSTRG.6942 Avicennia marina
Nitab4.5_0001393g0090 Nicotiana tabacum
Nitab4.5_0001409g0070 Nicotiana tabacum
Nitab4.5_0004743g0030 Nicotiana tabacum
Nitab4.5_0004829g0070 Nicotiana tabacum
Nn1g00959 Nelumbo nucifera
Nn1g04447 Nelumbo nucifera
Nn1g07230 Nelumbo nucifera
Oeu013129.2 Olea europaea
Oeu051200.1 Olea europaea
Os01g0950866 Oryza sativa ssp. japonica
Os05g0150000 Oryza sativa ssp. japonica
Peaxi162Scf00178g00615 Petunia axillaris
Peaxi162Scf01392g00009 Petunia axillaris
PGR004G1344 Punica granatum
PGR083G1359 Punica granatum
PGSC0003DMG400014421 Solanum tuberosum
PGSC0003DMG400016466 Solanum tuberosum
Phvul.006G047100 Phaseolus vulgaris
Phvul.006G147100 Phaseolus vulgaris
Potri.004G006600 Populus trichocarpa
Pp3c7_14070 Physcomitrium patens
Pp3c9_12480 Physcomitrium patens
PRCOL_00003033 Prasinoderma coloniale
Prupe.4G016700 Prunus persica
Prupe.4G218800 Prunus persica
Psat1g178120 Pisum sativum
Psat5g173720 Pisum sativum
PSO210G0489 Papaver somniferum
PSO541G6194 Papaver somniferum
PSO675G7474 Papaver somniferum
PSO832G1995 Papaver somniferum
QL05p072323 Quercus lobata
QL08p008756 Quercus lobata
QL09p024326 Quercus lobata
RcHm_v2.0_Chr5g0002421 Rosa chinensis
RcHm_v2.0_Chr5g0040871 Rosa chinensis
Rhsim06G0220300 Rhododendron simsii
Rhsim13G0151100 Rhododendron simsii
Sabra04G0003400 Salix brachista
SalBow1G3239 Salvia bowleyana
SalBow8G1035 Salvia bowleyana
Sc03g0008460 Simmondsia chinensis
Sc05g0009360 Simmondsia chinensis
Sed0008241 Sechium edule
Sed0011215 Sechium edule
SGA_v2.0_scaffold199G41258 Striga asiatica
SGA_v2.0_scaffold49G18255 Striga asiatica
SGA_v2.0_scaffold89G27475 Striga asiatica
SHI02222 Sapria himalayana
SMO353G0029 Selaginella moellendorffii
Solyc02g080940.3 Solanum lycopersicum
Solyc10g006240.3 Solanum lycopersicum
Sopen02g025620 Solanum pennellii
Sopen10g002200 Solanum pennellii
Sp1g10610 Schrenkiella parvula
Sp7g24820 Schrenkiella parvula
TAR629G0391 Trochodendron aralioides
TAR629G2767 Trochodendron aralioides
THA.LOC104813429 Tarenaya hassleriana
THA.LOC104823535 Tarenaya hassleriana
Thecc.06G226100 Theobroma cacao
Thecc.07G031700 Theobroma cacao
Thhalv10008483m.g Eutrema salsugineum
Thhalv10026100m.g Eutrema salsugineum
TPR.G13097 Trifolium pratense
TPR.G14432 Trifolium pratense
TWI38G2210 Tripterygium wilfordii
unitig_749.g13623 Utricularia gibba
unitig_899.g15284 Utricularia gibba
vmacro02214 Vaccinium macrocarpon
vmacro03672 Vaccinium macrocarpon
VMungo0540G2121 Vigna mungo
VMungo0540G2424 Vigna mungo
Zm00001eb043510 Zea mays
Zm00001eb057610 Zea mays
Zm00001eb140980 Zea mays
Zm00001eb157920 Zea mays
Zm00001eb222790 Zea mays
Zm00001eb291500 Zea mays
Zm00001eb308590 Zea mays
Zm00001eb354180 Zea mays
Zm00001eb364160 Zea mays

User provided reference genes

Program Settings