Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p34050 Brassica napus
A05p42350 Brassica napus
A06p37490 Brassica napus
Aa31LG11G9200 Aethionema arabicum
Aa31LG1G6500 Aethionema arabicum
Aa31LG5G15610 Aethionema arabicum
Aa31LG5G15800 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1624 Anthoceros agrestis
Actinidia05715 Actinidia chinensis
Actinidia19802 Actinidia chinensis
Actinidia23618 Actinidia chinensis
Actinidia23621 Actinidia chinensis
Actinidia24974 Actinidia chinensis
Ah.04g154280 Amaranthus hybridus
AL3G15660 Arabidopsis lyrata
AL6G39580 Arabidopsis lyrata
Aqoxy2G03278 Aquilegia oxysepala
Aqoxy3G00311 Aquilegia oxysepala
Aqoxy5G00521 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.515IAB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.68I8LU Arachis hypogaea
AT3G05230 Arabidopsis thaliana
AT5G27430 Arabidopsis thaliana
ATR0626G242 Amborella trichopoda
ATR0686G040 Amborella trichopoda
Atru.chr2.463 Acer truncatum
AUR62012559 Chenopodium quinoa
AUR62033865 Chenopodium quinoa
AUR62036508 Chenopodium quinoa
AUR62038056 Chenopodium quinoa
AUR62038182 Chenopodium quinoa
AUR62040073 Chenopodium quinoa
BcaB04g19276 Brassica carinata
BcaC03g17787 Brassica carinata
BcaC05g30011 Brassica carinata
BcaC05g30144 Brassica carinata
BcaC05g30145 Brassica carinata
BcaNung02457 Brassica carinata
BcaNung04371 Brassica carinata
BolC2t11879H Brassica oleracea
BolC2t12469H Brassica oleracea
BolC3t16424H Brassica oleracea
BolC5t34856H Brassica oleracea
BolC7t44609H Brassica oleracea
BraA02t08838Z Brassica rapa
BraA03t12578Z Brassica rapa
BraA05t23016Z Brassica rapa
BraA06t26673Z Brassica rapa
C02p58110 Brassica napus
C02p64030 Brassica napus
C03p41440 Brassica napus
C05p61960 Brassica napus
C07p40840 Brassica napus
CAN.G1132.9 Capsicum annuum
CANSAT54G0679 Cannabis sativa
CARHR079570 Cardamine hirsuta
CARHR186040 Cardamine hirsuta
Carub.0003s0448 Capsella rubella
Carub.0006s2510 Capsella rubella
Ca_09367_v3 Cicer arietinum L.
Ca_26300_v3 Cicer arietinum L.
Cc01_g00310 Coffea canephora
CDE06G1582 Ceratophyllum demersum
CDE06G1929 Ceratophyllum demersum
Cfa006557 Carpinus fangiana
Cfa015593 Carpinus fangiana
Ciclev10002702m.g Citrus clementina
Ciclev10002705m.g Citrus clementina
CiPaw.02G093000 Carya illinoinensis
CiPaw.07G015600 Carya illinoinensis
CiPaw.08G166200 Carya illinoinensis
ClCG02G015960 Citrullus lanatus
ClCG03G016860 Citrullus lanatus
Cpa.g.sc48.25 Carica papaya
Cre14.g620400 Chlamydomonas reinhardtii
CsaV3_1G039080 Cucumis sativus L.
CsaV3_2G005090 Cucumis sativus L.
CSS0001262 Camellia sinensis var. sinensis
CSS0016634 Camellia sinensis var. sinensis
CSS0025333 Camellia sinensis var. sinensis
CSS0033532 Camellia sinensis var. sinensis
DCAR_003324 Daucus carota
Dinv40266 Davidia involucrata
Duzib150G0768 Durio zibethinus
Duzib168G0574 Durio zibethinus
Duzib170G0366 Durio zibethinus
ECA238G2946 Erigeron canadensis
EL10Ac3g06396 Beta vulgaris
Eucgr.B01125 Eucalyptus grandis
Eucgr.H04475 Eucalyptus grandis
Eucgr.L00595 Eucalyptus grandis
FAN02G2555 Fragaria x ananassa
FAN05G1762 Fragaria x ananassa
FAN05G3190 Fragaria x ananassa
FAN09G4031 Fragaria x ananassa
FAN14G4928 Fragaria x ananassa
FAN14G5392 Fragaria x ananassa
FvH4_6g05520 Fragaria vesca
Glyma.03G239600 Glycine max
Glyma.10G156000 Glycine max
Glyma.18G041800 Glycine max
Glyma.19G236500 Glycine max
Glyma.20G232300 Glycine max
Gohir.A03G034000 Gossypium hirsutum
Gohir.A05G102800 Gossypium hirsutum
Gohir.A08G000068 Gossypium hirsutum
Gohir.D03G134300 Gossypium hirsutum
Gohir.D05G102500 Gossypium hirsutum
Gohir.D08G008300 Gossypium hirsutum
Gorai.003G141400 Gossypium raimondii
Gorai.004G001500 Gossypium raimondii
Gorai.009G106800 Gossypium raimondii
GSVIVG01000024001 Vitis vinifera
GSVIVG01017897001 Vitis vinifera
HanXRQChr01g0004871 Helianthus annuus
HanXRQChr10g0290051 Helianthus annuus
HanXRQChr14g0446391 Helianthus annuus
Haze_00951 Corylus avellana
Haze_04222 Corylus avellana
Hma1.2p1_0511F.1_g169030 Hydrangea macrophylla
Hma1.2p1_1362F.1_g278220 Hydrangea macrophylla
HPP92_010496 Vanilla planifolia
HPP92_017356 Vanilla planifolia
Hund12184 Selenicereus undatus
Hund22715 Selenicereus undatus
Lalb_Chr15g0077151 Lupinus albus
Lalb_Chr18g0045551 Lupinus albus
Lj1g0006830 Lotus japonicus
Lj1g0023546 Lotus japonicus
Lj4g0000061 Lotus japonicus
Lj4g0000854 Lotus japonicus
Lj4g0010694 Lotus japonicus
Lj4g0027211 Lotus japonicus
Lj5g0001079 Lotus japonicus
Lj7A580G61 Lonicera japonica
Lj9A684G46 Lonicera japonica
Lsat_1_v5_gn_1_113741 Lactuca sativa
Lsat_1_v5_gn_2_64140 Lactuca sativa
Lsat_1_v5_gn_5_39981 Lactuca sativa
Manes.08G122700 Manihot esculenta
Manes.09G164800 Manihot esculenta
Mapoly0014s0146 Marchantia polymorpha
MBI10_g07280_MAGBIO Magnolia biondii
MBI10_g16022_MAGBIO Magnolia biondii
MBI17_g29946_MAGBIO Magnolia biondii
MBI19_g16111_MAGBIO Magnolia biondii
MBI19_g31124_MAGBIO Magnolia biondii
MBI19_g33795_MAGBIO Magnolia biondii
MCO16G167 Micromonas commoda
MD04G1208000 Malus domestica
MD12G1222000 Malus domestica
Medtr3g027890 Medicago truncatula
Medtr7g113740 Medicago truncatula
MELO3C004285.2 Cucumis melo
MELO3C015335.2 Cucumis melo
Migut.E00604 Erythranthe guttata
Migut.E00664 Erythranthe guttata
Migut.N01948 Erythranthe guttata
Migut.N01949 Erythranthe guttata
MSTRG.28008 Avicennia marina
MSTRG.5095 Avicennia marina
Nitab4.5_0001643g0050 Nicotiana tabacum
Nitab4.5_0002031g0090 Nicotiana tabacum
Nn4g23821 Nelumbo nucifera
Nn4g26204 Nelumbo nucifera
Oeu007557.1 Olea europaea
Oeu027745.1 Olea europaea
Oeu036909.1 Olea europaea
Os01g0131800 Oryza sativa ssp. japonica
Os09g0556000 Oryza sativa ssp. japonica
Peaxi162Scf00037g00119 Petunia axillaris
Peaxi162Scf00071g00651 Petunia axillaris
PGR031G2417 Punica granatum
PGR142G2274 Punica granatum
PGSC0003DMG400028606 Solanum tuberosum
Phvul.001G228900 Phaseolus vulgaris
Phvul.006G093500 Phaseolus vulgaris
Potri.005G036200 Populus trichocarpa
Potri.006G234600 Populus trichocarpa
Potri.018G058000 Populus trichocarpa
Pp3c1_7190 Physcomitrium patens
Pp3c2_31480 Physcomitrium patens
PRCOL_00004777 Prasinoderma coloniale
Prupe.6G328900 Prunus persica
Psat3g010320 Pisum sativum
Psat5g204840 Pisum sativum
PSO017G0230 Papaver somniferum
PSO170G1582 Papaver somniferum
PSO302G0298 Papaver somniferum
PSO478G5072 Papaver somniferum
QL03p004646 Quercus lobata
QL03p004652 Quercus lobata
QL03p004799 Quercus lobata
QL06p003940 Quercus lobata
QL09p026108 Quercus lobata
RcHm_v2.0_Chr3g0454281 Rosa chinensis
Rhsim05G0143600 Rhododendron simsii
Rhsim07G0181400 Rhododendron simsii
Sabra05G0036700 Salix brachista
Sabra06G0183000 Salix brachista
Sabra18G0054500 Salix brachista
SalBow3G4495 Salvia bowleyana
SalBow8G3103 Salvia bowleyana
Sc19g0004490 Simmondsia chinensis
Sc25g0004490 Simmondsia chinensis
Sed0003757 Sechium edule
Sed0008514 Sechium edule
Sed0016499 Sechium edule
SEGI_05018 Sequoiadendron giganteum
SEGI_22558 Sequoiadendron giganteum
SGA_v2.0_scaffold39G15194 Striga asiatica
SGA_v2.0_scaffold409G51102 Striga asiatica
SMO174G0222 Selaginella moellendorffii
Solyc01g098780.3 Solanum lycopersicum
Sopen01g042320 Solanum pennellii
Sp2g20650 Schrenkiella parvula
Sp3g04080 Schrenkiella parvula
TAR362G0008 Trochodendron aralioides
TAR629G0725 Trochodendron aralioides
TAR633G1791 Trochodendron aralioides
THA.LOC104802805 Tarenaya hassleriana
THA.LOC104818681 Tarenaya hassleriana
Thecc.09G340400 Theobroma cacao
Thhalv10005038m.g Eutrema salsugineum
Thhalv10021665m.g Eutrema salsugineum
TPR.G12227 Trifolium pratense
TPR.G26282 Trifolium pratense
TPR.G33237 Trifolium pratense
TWI56G0329 Tripterygium wilfordii
unitig_746.g26811 Utricularia gibba
unitig_899.g15536 Utricularia gibba
vmacro05027 Vaccinium macrocarpon
vmacro19636 Vaccinium macrocarpon
VMungo0540G1098 Vigna mungo
VMungo0720G2905 Vigna mungo
VMungo1383G2562 Vigna mungo
Zm00001eb104510 Zea mays
Zm00001eb320590 Zea mays

User provided reference genes

Program Settings