Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17620 Brassica napus
A03p24980 Brassica napus
A03p56670 Brassica napus
A04p33620 Brassica napus
Aa31LG1G26640 Aethionema arabicum
Aa31LG5G11760 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2790 Anthoceros agrestis
Actinidia00918 Actinidia chinensis
Actinidia33487 Actinidia chinensis
Ah.05g173560 Amaranthus hybridus
Ah.05g173580 Amaranthus hybridus
AL4G44150 Arabidopsis lyrata
AL7G26550 Arabidopsis lyrata
Aqoxy1G00089 Aquilegia oxysepala
Aqoxy386s003 Aquilegia oxysepala
Aqoxy7G00779 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FMK0QZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PGQ24G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea
AT2G45060 Arabidopsis thaliana
AT4G26410 Arabidopsis thaliana
ATR0068G080 Amborella trichopoda
ATR0317G006 Amborella trichopoda
Atru.chr3.2058 Acer truncatum
Atru.chr5.218 Acer truncatum
AUR62004149 Chenopodium quinoa
AUR62013710 Chenopodium quinoa
AUR62040893 Chenopodium quinoa
AUR62042622 Chenopodium quinoa
BcaB01g03298 Brassica carinata
BcaC01g05164 Brassica carinata
BcaC02g07131 Brassica carinata
BcaC02g07132 Brassica carinata
BcaC06g32751 Brassica carinata
BcaC08g44105 Brassica carinata
BcaC08g44136 Brassica carinata
BcaC09g50695 Brassica carinata
BcaNung02424 Brassica carinata
BcaNung06148 Brassica carinata
BolC1t02152H Brassica oleracea
BolC3t15327H Brassica oleracea
BolC4t28644H Brassica oleracea
BolC7t43369H Brassica oleracea
BolC7t45975H Brassica oleracea
BraA01t01715Z Brassica rapa
BraA03t11701Z Brassica rapa
BraA03t14737Z Brassica rapa
BraA04t18825Z Brassica rapa
C01p22220 Brassica napus
C03p29810 Brassica napus
C04p71380 Brassica napus
C06p15350 Brassica napus
C07p28280 Brassica napus
C07p54870 Brassica napus
CAN.G899.13 Capsicum annuum
CANSAT11G1709 Cannabis sativa
CANSAT21G2210 Cannabis sativa
CARHR140310 Cardamine hirsuta
CARHR233960 Cardamine hirsuta
Carub.0004s2765 Capsella rubella
Carub.0007s1455 Capsella rubella
Ca_07812_v3 Cicer arietinum L.
Ca_18794_v3 Cicer arietinum L.
Cc01_g00260 Coffea canephora
Cc02_g24600 Coffea canephora
CDE04G2393 Ceratophyllum demersum
CDE08G0031 Ceratophyllum demersum
Cfa009531 Carpinus fangiana
Ciclev10016445m.g Citrus clementina
Ciclev10021755m.g Citrus clementina
Ciclev10029731m.g Citrus clementina
CiPaw.13G031200 Carya illinoinensis
CiPaw.13G179400 Carya illinoinensis
ClCG03G014660 Citrullus lanatus
ClCG06G002980 Citrullus lanatus
COL.COLO4_12468 Corchorus olitorius
COL.COLO4_35069 Corchorus olitorius
Cpa.g.c27558 Carica papaya
Cpa.g.sc119.19 Carica papaya
Cre10.g444800 Chlamydomonas reinhardtii
CsaV3_1G041510 Cucumis sativus L.
CsaV3_6G009100 Cucumis sativus L.
CSS0000753 Camellia sinensis var. sinensis
CSS0005850 Camellia sinensis var. sinensis
CSS0011772 Camellia sinensis var. sinensis
CSS0014074 Camellia sinensis var. sinensis
CSS0018255 Camellia sinensis var. sinensis
CSS0025152 Camellia sinensis var. sinensis
CSS0040810 Camellia sinensis var. sinensis
DCAR_001960 Daucus carota
DCAR_031863 Daucus carota
DCAR_031864 Daucus carota
Dinv01806 Davidia involucrata
Dinv39803 Davidia involucrata
Dinv44110 Davidia involucrata
Duzib133G1334 Durio zibethinus
Duzib168G2058 Durio zibethinus
ECA247G1848 Erigeron canadensis
EL10Ac1g00819 Beta vulgaris
Eucgr.D02501 Eucalyptus grandis
Eucgr.J01745 Eucalyptus grandis
FAN01G1014 Fragaria x ananassa
FAN03G2579 Fragaria x ananassa
FAN06G1805 Fragaria x ananassa
FAN06G3468 Fragaria x ananassa
FAN10G1785 Fragaria x ananassa
FAN10G3048 Fragaria x ananassa
FAN11G0810 Fragaria x ananassa
FAN16G3031 Fragaria x ananassa
FAN21G2326 Fragaria x ananassa
FAN25G3552 Fragaria x ananassa
FvH4_3g45950 Fragaria vesca
FvH4_7g10760 Fragaria vesca
Glyma.07G225100 Glycine max
Glyma.11G165710 Glycine max
Glyma.20G025000 Glycine max
Gohir.A07G147400 Gossypium hirsutum
Gohir.A13G211000 Gossypium hirsutum
Gohir.D07G153500 Gossypium hirsutum
Gohir.D13G214900 Gossypium hirsutum
Gorai.001G175600 Gossypium raimondii
Gorai.013G245200 Gossypium raimondii
GSVIVG01018179001 Vitis vinifera
GSVIVG01025507001 Vitis vinifera
HanXRQChr02g0057611 Helianthus annuus
HanXRQChr06g0168971 Helianthus annuus
Haze_02724 Corylus avellana
Haze_22912 Corylus avellana
Haze_22913 Corylus avellana
Hma1.2p1_0341F.1_g130280 Hydrangea macrophylla
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla
HPP92_014370 Vanilla planifolia
Hund17062 Selenicereus undatus
Hund20608 Selenicereus undatus
Hund27385 Selenicereus undatus
Lalb_Chr03g0039911 Lupinus albus
Lalb_Chr09g0328951 Lupinus albus
Lalb_Chr19g0127461 Lupinus albus
Lj1g0022495 Lotus japonicus
Lj2A888G14 Lonicera japonica
Lj4g0027888 Lotus japonicus
Lj7C539G2 Lonicera japonica
Lsat_1_v5_gn_3_128400 Lactuca sativa
Lsat_1_v5_gn_3_74580 Lactuca sativa
Lsat_1_v5_gn_6_56180 Lactuca sativa
Lsat_1_v5_gn_7_10260 Lactuca sativa
Manes.01G270200 Manihot esculenta
Manes.03G086300 Manihot esculenta
Mapoly0004s0186 Marchantia polymorpha
MBI04_g09510_MAGBIO Magnolia biondii
MBI19_g09318_MAGBIO Magnolia biondii
MCO13G396 Micromonas commoda
MD07G1087600 Malus domestica
MD11G1001100 Malus domestica
Medtr4g083250 Medicago truncatula
Medtr7g445370 Medicago truncatula
MELO3C015562.2 Cucumis melo
MELO3C022232.2 Cucumis melo
Migut.N00530 Erythranthe guttata
Migut.N01761 Erythranthe guttata
MSTRG.12807 Avicennia marina
MSTRG.4917 Avicennia marina
Nitab4.5_0000075g0190 Nicotiana tabacum
Nitab4.5_0000706g0100 Nicotiana tabacum
Nitab4.5_0000890g0190 Nicotiana tabacum
Nitab4.5_0002304g0050 Nicotiana tabacum
Nn2g15900 Nelumbo nucifera
Nn6g33937 Nelumbo nucifera
Oeu009620.1 Olea europaea
Oeu018898.1 Olea europaea
Os02g0104800 Oryza sativa ssp. japonica
Os03g0324800 Oryza sativa ssp. japonica
Peaxi162Scf00186g01511 Petunia axillaris
Peaxi162Scf00377g00042 Petunia axillaris
PGR004G0587 Punica granatum
PGSC0003DMG400025977 Solanum tuberosum
Phvul.002G101500 Phaseolus vulgaris
Phvul.008G156600 Phaseolus vulgaris
Potri.001G001300 Populus trichocarpa
Potri.002G142900 Populus trichocarpa
Potri.014G058700 Populus trichocarpa
Pp3c20_17010 Physcomitrium patens
Pp3c23_11620 Physcomitrium patens
Prupe.2G135800 Prunus persica
Prupe.6G001300 Prunus persica
Psat0s330g0040 Pisum sativum
Psat3g155600 Pisum sativum
Psat7g134440 Pisum sativum
PSO017G4318 Papaver somniferum
PSO170G1934 Papaver somniferum
PSO339G4532 Papaver somniferum
PSO384G4623 Papaver somniferum
QL01p007902 Quercus lobata
QL01p007916 Quercus lobata
QL04p035844 Quercus lobata
RcHm_v2.0_Chr1g0348701 Rosa chinensis
RcHm_v2.0_Chr5g0084061 Rosa chinensis
Rhsim01G0135700 Rhododendron simsii
Rhsim13G0234800 Rhododendron simsii
Sabra02G0111400 Salix brachista
Sabra14G0042900 Salix brachista
SalBow3G2375 Salvia bowleyana
SalBow5G0529 Salvia bowleyana
Sc16g0012250 Simmondsia chinensis
Sc26g0001340 Simmondsia chinensis
Sed0004485 Sechium edule
Sed0024906 Sechium edule
SEGI_35371 Sequoiadendron giganteum
SGA_v2.0_scaffold43G16519 Striga asiatica
SGA_v2.0_scaffold6G03331 Striga asiatica
SHI06882 Sapria himalayana
SHI08351 Sapria himalayana
SMO230G0092 Selaginella moellendorffii
Solyc01g049960.4 Solanum lycopersicum
Solyc01g090770.4 Solanum lycopersicum
Sopen01g019280 Solanum pennellii
Sopen01g036500 Solanum pennellii
Sp4g27120 Schrenkiella parvula
Sp7g24310 Schrenkiella parvula
TAR362G1271 Trochodendron aralioides
TAR375G1003 Trochodendron aralioides
TAR376G0744 Trochodendron aralioides
TAR623G1141 Trochodendron aralioides
TAR636G3536 Trochodendron aralioides
THA.LOC104802474 Tarenaya hassleriana
THA.LOC104811711 Tarenaya hassleriana
Thecc.01G385700 Theobroma cacao
Thecc.09G205700 Theobroma cacao
Thhalv10001582m.g Eutrema salsugineum
Thhalv10026011m.g Eutrema salsugineum
TPR.G34033 Trifolium pratense
TPR.G39127 Trifolium pratense
TWI34G0676 Tripterygium wilfordii
TWI59G0864 Tripterygium wilfordii
unitig_0.g736 Utricularia gibba
unitig_22.g6799 Utricularia gibba
vmacro21040 Vaccinium macrocarpon
VMungo0251G2931 Vigna mungo
Zm00001eb015470 Zea mays

User provided reference genes

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