Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p25970 Brassica napus
A09p27290 Brassica napus
Aa31LG9G10610 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4083 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2632 Anthoceros agrestis
Actinidia02055 Actinidia chinensis
Actinidia14504 Actinidia chinensis
Actinidia14505 Actinidia chinensis
Actinidia27412 Actinidia chinensis
Ah.02g116400 Amaranthus hybridus
AL6G46530 Arabidopsis lyrata
Aqoxy7G00482 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.28RV6S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6G7KNU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C2HNJF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CC9CW3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F7SDYX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IQ2E51 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L43R8Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M3HHRX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RCPG40 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UV4XXD Arachis hypogaea
AT4G11820 Arabidopsis thaliana
ATR0757G171 Amborella trichopoda
Atru.chr1.548 Acer truncatum
Atru.chr9.1517 Acer truncatum
AUR62010579 Chenopodium quinoa
AUR62017311 Chenopodium quinoa
BcaB01g01681 Brassica carinata
BcaB05g23787 Brassica carinata
BcaC03g16326 Brassica carinata
BolC2t10161H Brassica oleracea
BolC9t56307H Brassica oleracea
BraA02t07595Z Brassica rapa
BraA09t38295Z Brassica rapa
C02p41420 Brassica napus
C02p41430 Brassica napus
C09p34610 Brassica napus
CAN.G1394.8 Capsicum annuum
CAN.G1468.4 Capsicum annuum
CAN.G1468.5 Capsicum annuum
CAN.G26.35 Capsicum annuum
CAN.G981.50 Capsicum annuum
CAN.G981.51 Capsicum annuum
CANSAT21G2594 Cannabis sativa
CARHR254460 Cardamine hirsuta
Carub.0006s3093 Capsella rubella
Ca_06665_v3 Cicer arietinum L.
Ca_16684_v3 Cicer arietinum L.
Cc08_g13850 Coffea canephora
CDE02G4260 Ceratophyllum demersum
CDE11G0889 Ceratophyllum demersum
Cfa008260 Carpinus fangiana
Cfa012089 Carpinus fangiana
Cfa027098 Carpinus fangiana
Ciclev10005099m.g Citrus clementina
Ciclev10020042m.g Citrus clementina
CiPaw.11G142000 Carya illinoinensis
CiPaw.12G099700 Carya illinoinensis
CiPaw.12G099900 Carya illinoinensis
ClCG00G000220 Citrullus lanatus
ClCG00G005930 Citrullus lanatus
ClCG00G005970 Citrullus lanatus
ClCG00G005980 Citrullus lanatus
ClCG10G003490 Citrullus lanatus
COL.COLO4_14234 Corchorus olitorius
COL.COLO4_23781 Corchorus olitorius
Cpa.g.sc29.22 Carica papaya
Cre16.g678850 Chlamydomonas reinhardtii
CsaV3_3G003490 Cucumis sativus L.
CSS0010800 Camellia sinensis var. sinensis
CSS0012119 Camellia sinensis var. sinensis
CSS0020332 Camellia sinensis var. sinensis
CSS0023940 Camellia sinensis var. sinensis
CSS0033388 Camellia sinensis var. sinensis
CSS0040611 Camellia sinensis var. sinensis
DCAR_005674 Daucus carota
Dinv35145 Davidia involucrata
Dinv37700 Davidia involucrata
Dinv39024 Davidia involucrata
Duzib068G1111 Durio zibethinus
Duzib084G1304 Durio zibethinus
Duzib205G1722 Durio zibethinus
ECA233G6046 Erigeron canadensis
ECA246G2228 Erigeron canadensis
EL10Ac5g12715 Beta vulgaris
Eucgr.D01931 Eucalyptus grandis
FAN04G2379 Fragaria x ananassa
FAN08G0106 Fragaria x ananassa
FAN13G2813 Fragaria x ananassa
FAN18G4240 Fragaria x ananassa
FvH4_5g01350 Fragaria vesca
Glyma.01G215500 Glycine max
Glyma.09G148500 Glycine max
Glyma.10G108800 Glycine max
Glyma.11G027000 Glycine max
Glyma.16G200200 Glycine max
Glyma.17G132300 Glycine max
Gohir.A03G014510 Gossypium hirsutum
Gohir.A08G178000 Gossypium hirsutum
Gohir.A10G111900 Gossypium hirsutum
Gohir.A12G017100 Gossypium hirsutum
Gohir.A12G224300 Gossypium hirsutum
Gohir.D03G155400 Gossypium hirsutum
Gohir.D08G196300 Gossypium hirsutum
Gohir.D12G227000 Gossypium hirsutum
Gorai.003G163200 Gossypium raimondii
Gorai.004G207000 Gossypium raimondii
Gorai.008G243100 Gossypium raimondii
GSVIVG01008388001 Vitis vinifera
GSVIVG01010658001 Vitis vinifera
GSVIVG01010662001 Vitis vinifera
GSVIVG01015848001 Vitis vinifera
GSVIVG01018434001 Vitis vinifera
GSVIVG01018566001 Vitis vinifera
GSVIVG01019875001 Vitis vinifera
GSVIVG01023489001 Vitis vinifera
GSVIVG01023491001 Vitis vinifera
HanXRQChr02g0048681 Helianthus annuus
HanXRQChr06g0165141 Helianthus annuus
Haze_08966 Corylus avellana
Haze_13786 Corylus avellana
Haze_26348 Corylus avellana
Hma1.2p1_0138F.1_g062670 Hydrangea macrophylla
HPP92_022605 Vanilla planifolia
Hund11532 Selenicereus undatus
Hund14711 Selenicereus undatus
Lalb_Chr05g0225141 Lupinus albus
Lalb_Chr09g0333151 Lupinus albus
Lj2A198T51 Lonicera japonica
Lj2A200T28 Lonicera japonica
Lj2C200G6 Lonicera japonica
Lj2g0007715 Lotus japonicus
Lj2g0022440 Lotus japonicus
Lj4g0024988 Lotus japonicus
Lj8C240G7 Lonicera japonica
Lsat_1_v5_gn_3_4300 Lactuca sativa
Lsat_1_v5_gn_6_12841 Lactuca sativa
Manes.01G069000 Manihot esculenta
Manes.02G030900 Manihot esculenta
Mapoly0020s0034 Marchantia polymorpha
MBI04_g28568_MAGBIO Magnolia biondii
MBI12_g42959_MAGBIO Magnolia biondii
MD04G1069200 Malus domestica
MD06G1070000 Malus domestica
Medtr5g011040 Medicago truncatula
Medtr6g089570 Medicago truncatula
MELO3C014017.2 Cucumis melo
Migut.A00913 Erythranthe guttata
MSTRG.12027 Avicennia marina
MSTRG.1900 Avicennia marina
MSTRG.23590 Avicennia marina
MSTRG.25567 Avicennia marina
Nitab4.5_0000140g0140 Nicotiana tabacum
Nitab4.5_0001200g0090 Nicotiana tabacum
Nitab4.5_0001714g0230 Nicotiana tabacum
Nitab4.5_0001714g0250 Nicotiana tabacum
Nitab4.5_0002228g0030 Nicotiana tabacum
Nitab4.5_0002886g0090 Nicotiana tabacum
Nitab4.5_0009089g0020 Nicotiana tabacum
Nn1g01311 Nelumbo nucifera
Nn6g34297 Nelumbo nucifera
Oeu019099.1 Olea europaea
Oeu021159.1 Olea europaea
Oeu036771.1 Olea europaea
Oeu048769.1 Olea europaea
Oeu059052.1 Olea europaea
Os03g0118800 Oryza sativa ssp. japonica
Os08g0544900 Oryza sativa ssp. japonica
Os09g0521400 Oryza sativa ssp. japonica
Peaxi162Scf00102g01349 Petunia axillaris
Peaxi162Scf00620g00815 Petunia axillaris
Peaxi162Scf00620g00831 Petunia axillaris
Peaxi162Scf00620g00832 Petunia axillaris
Peaxi162Scf01294g00241 Petunia axillaris
PGR031G2468 Punica granatum
PGSC0003DMG400004253 Solanum tuberosum
PGSC0003DMG400012522 Solanum tuberosum
PGSC0003DMG400022749 Solanum tuberosum
PGSC0003DMG400022750 Solanum tuberosum
Phvul.002G153600 Phaseolus vulgaris
Phvul.003G213200 Phaseolus vulgaris
Phvul.004G123000 Phaseolus vulgaris
Potri.001G111700 Populus trichocarpa
Potri.003G120300 Populus trichocarpa
Potri.003G120400 Populus trichocarpa
Pp3c5_26660 Physcomitrium patens
Pp3c6_5280 Physcomitrium patens
Prupe.5G088900 Prunus persica
Psat2g181320 Pisum sativum
PSO478G1464 Papaver somniferum
PSO782G5564 Papaver somniferum
QL03p064778 Quercus lobata
QL12p016788 Quercus lobata
RcHm_v2.0_Chr7g0199551 Rosa chinensis
Rhsim02G0125700 Rhododendron simsii
Rhsim07G0043700 Rhododendron simsii
Rhsim07G0095900 Rhododendron simsii
Sabra01G0085300 Salix brachista
Sabra03G0084400 Salix brachista
SalBow6G2135 Salvia bowleyana
Sc01g0008820 Simmondsia chinensis
Sed0004891 Sechium edule
SEGI_31958 Sequoiadendron giganteum
SGA_v2.0_scaffold146G36220 Striga asiatica
SGA_v2.0_scaffold286G47116 Striga asiatica
SMO239G0060 Selaginella moellendorffii
SMO270G0012 Selaginella moellendorffii
Solyc08g007790.3 Solanum lycopersicum
Solyc08g080160.4 Solanum lycopersicum
Solyc08g080170.3 Solanum lycopersicum
Solyc12g056450.2 Solanum lycopersicum
Sopen08g003720 Solanum pennellii
Sopen08g028520 Solanum pennellii
Sopen08g028530 Solanum pennellii
Sopen12g029040 Solanum pennellii
Sp6g05630 Schrenkiella parvula
TAR374G0172 Trochodendron aralioides
TAR375G0378 Trochodendron aralioides
TAR629G1137 Trochodendron aralioides
TAR636G0524 Trochodendron aralioides
THA.LOC104806363 Tarenaya hassleriana
THA.LOC104809428 Tarenaya hassleriana
THA.LOC104814221 Tarenaya hassleriana
Thecc.03G167700 Theobroma cacao
Thecc.03G269800 Theobroma cacao
Thhalv10028643m.g Eutrema salsugineum
TPR.G19579 Trifolium pratense
TPR.G21306 Trifolium pratense
TWI60G0237 Tripterygium wilfordii
TWI81G0939 Tripterygium wilfordii
unitig_22.g5478 Utricularia gibba
unitig_8.g3900 Utricularia gibba
vmacro14009 Vaccinium macrocarpon
VMungo0464G1598 Vigna mungo
VMungo1215G0266 Vigna mungo
VMungo1215G1475 Vigna mungo
Zm00001eb001340 Zea mays
Zm00001eb103070 Zea mays
Zm00001eb318820 Zea mays
Zm00001eb403920 Zea mays

User provided reference genes

Program Settings