Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p60880 Brassica napus
A04p18960 Brassica napus
A09p56180 Brassica napus
Aa31LG2G18720 Aethionema arabicum
Aa31LG7G7720 Aethionema arabicum
Aa31sc60G110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.598 Anthoceros agrestis
Actinidia01710 Actinidia chinensis
Actinidia06434 Actinidia chinensis
Actinidia08173 Actinidia chinensis
Actinidia22266 Actinidia chinensis
Actinidia27780 Actinidia chinensis
AL1G37610 Arabidopsis lyrata
AL4G15170 Arabidopsis lyrata
AL7G20460 Arabidopsis lyrata
Aqoxy3G00966 Aquilegia oxysepala
Aqoxy3G03031 Aquilegia oxysepala
Aqoxy7G02485 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9R72FZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JE1LMX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K2Y2WZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SAQT9Y Arachis hypogaea
AT1G23860 Arabidopsis thaliana
AT2G24590 Arabidopsis thaliana
AT4G31580 Arabidopsis thaliana
ATR0580G092 Amborella trichopoda
ATR1149G106 Amborella trichopoda
Atru.chr11.2002 Acer truncatum
Atru.chr7.2614 Acer truncatum
AUR62005355 Chenopodium quinoa
AUR62014008 Chenopodium quinoa
AUR62020291 Chenopodium quinoa
AUR62037712 Chenopodium quinoa
BcaB07g32360 Brassica carinata
BolC4t26971H Brassica oleracea
BolC5t31004H Brassica oleracea
BolC7t46325H Brassica oleracea
BraA03t15126Z Brassica rapa
BraA04t17496Z Brassica rapa
BraA09t39586Z Brassica rapa
BraA09t41014Z Brassica rapa
C04p54200 Brassica napus
C05p23060 Brassica napus
C07p58770 Brassica napus
CANSAT01G3233 Cannabis sativa
CANSAT25G2145 Cannabis sativa
CARHR024260 Cardamine hirsuta
CARHR117320 Cardamine hirsuta
CARHR239460 Cardamine hirsuta
Carub.0001s2335 Capsella rubella
Carub.0004s0401 Capsella rubella
Carub.0007s0899 Capsella rubella
Ca_01521_v3 Cicer arietinum L.
Ca_01522_v3 Cicer arietinum L.
Ca_15650_v3 Cicer arietinum L.
Ca_15658_v3 Cicer arietinum L.
Ca_22744_v3 Cicer arietinum L.
CBR_g38426 Chara braunii
CBR_g860 Chara braunii
Cc08_g06520 Coffea canephora
Cc11_g14520 Coffea canephora
CDE02G2289 Ceratophyllum demersum
CDE05G0352 Ceratophyllum demersum
Cfa013291 Carpinus fangiana
Ciclev10009655m.g Citrus clementina
Ciclev10032693m.g Citrus clementina
CiPaw.05G146800 Carya illinoinensis
CiPaw.07G211100 Carya illinoinensis
CiPaw.08G020800 Carya illinoinensis
ClCG05G025210 Citrullus lanatus
ClCG05G026420 Citrullus lanatus
COL.COLO4_22760 Corchorus olitorius
Cpa.g.sc23.36 Carica papaya
Cpa.g.sc69.10 Carica papaya
Cre09.g408200 Chlamydomonas reinhardtii
Cre17.g712000 Chlamydomonas reinhardtii
CsaV3_3G047170 Cucumis sativus L.
CsaV3_5G031680 Cucumis sativus L.
CSS0041526 Camellia sinensis var. sinensis
CSS0049664 Camellia sinensis var. sinensis
DCAR_000686 Daucus carota
DCAR_024140 Daucus carota
Dinv06045 Davidia involucrata
Dinv24875 Davidia involucrata
Duzib150G1428 Durio zibethinus
Duzib168G0921 Durio zibethinus
Duzib268G0305 Durio zibethinus
ECA233G4618 Erigeron canadensis
ECA234G3942 Erigeron canadensis
ECA246G2330 Erigeron canadensis
EL10Ac2g02418 Beta vulgaris
EL10Ac6g13653 Beta vulgaris
Eucgr.C02009 Eucalyptus grandis
Eucgr.H02907 Eucalyptus grandis
FAN07G0635 Fragaria x ananassa
FAN12G1322 Fragaria x ananassa
FAN15G2301 Fragaria x ananassa
FAN17G0899 Fragaria x ananassa
FAN22G0415 Fragaria x ananassa
FAN27G2672 Fragaria x ananassa
FAN27G3462 Fragaria x ananassa
FvH4_2g36630 Fragaria vesca
FvH4_4g34770 Fragaria vesca
Glyma.08G288300 Glycine max
Glyma.14G136700 Glycine max
Glyma.17G196800 Glycine max
Glyma.18G136900 Glycine max
Gohir.A03G140800 Gossypium hirsutum
Gohir.A05G063200 Gossypium hirsutum
Gohir.A06G104700 Gossypium hirsutum
Gohir.A13G178600 Gossypium hirsutum
Gohir.D01G134000 Gossypium hirsutum
Gohir.D02G163600 Gossypium hirsutum
Gohir.D05G065800 Gossypium hirsutum
Gohir.D06G106800 Gossypium hirsutum
Gohir.D13G186700 Gossypium hirsutum
Gorai.002G165700 Gossypium raimondii
Gorai.005G183600 Gossypium raimondii
Gorai.009G066600 Gossypium raimondii
Gorai.010G121100 Gossypium raimondii
Gorai.010G245400 Gossypium raimondii
GSVIVG01020220001 Vitis vinifera
GSVIVG01033172001 Vitis vinifera
HanXRQChr06g0174141 Helianthus annuus
HanXRQChr10g0296811 Helianthus annuus
HanXRQChr12g0354121 Helianthus annuus
HanXRQChr17g0570191 Helianthus annuus
Haze_12145 Corylus avellana
Haze_21768 Corylus avellana
Haze_26371 Corylus avellana
Hma1.2p1_0160F.1_g070710 Hydrangea macrophylla
Hma1.2p1_0389F.1_g142500 Hydrangea macrophylla
HPP92_007285 Vanilla planifolia
HPP92_008757 Vanilla planifolia
HPP92_021952 Vanilla planifolia
Hund25338 Selenicereus undatus
Hund25579 Selenicereus undatus
Lalb_Chr08g0243511 Lupinus albus
Lalb_Chr14g0362301 Lupinus albus
Lj4g0006026 Lotus japonicus
Lj5g0027885 Lotus japonicus
Lj6A804T65 Lonicera japonica
Lj7A747T81 Lonicera japonica
Lsat_1_v5_gn_3_25341 Lactuca sativa
Lsat_1_v5_gn_4_6320 Lactuca sativa
Lsat_1_v5_gn_8_159681 Lactuca sativa
Manes.03G004900 Manihot esculenta
Manes.12G030500 Manihot esculenta
Manes.13G031600 Manihot esculenta
Manes.16G134000 Manihot esculenta
Mapoly0071s0008 Marchantia polymorpha
MBI07_g00458_MAGBIO Magnolia biondii
MBI14_g43242_MAGBIO Magnolia biondii
MBI15_g26083_MAGBIO Magnolia biondii
MD08G1126400 Malus domestica
MD13G1089900 Malus domestica
MD15G1106100 Malus domestica
MD16G1090200 Malus domestica
MELO3C003619.2 Cucumis melo
MELO3C012008.2 Cucumis melo
Migut.E01426 Erythranthe guttata
MSTRG.11802 Avicennia marina
MSTRG.13946 Avicennia marina
Nitab4.5_0000113g0010 Nicotiana tabacum
Nitab4.5_0000555g0210 Nicotiana tabacum
Nitab4.5_0001942g0010 Nicotiana tabacum
Nitab4.5_0005885g0010 Nicotiana tabacum
Nitab4.5_0010111g0010 Nicotiana tabacum
Nn1g06707 Nelumbo nucifera
Nn2g12588 Nelumbo nucifera
Nn3g16920 Nelumbo nucifera
Nn4g22828 Nelumbo nucifera
Nn8g40275 Nelumbo nucifera
Oeu018555.1 Olea europaea
Oeu023259.1 Olea europaea
Oeu025432.1 Olea europaea
Os02g0610600 Oryza sativa ssp. japonica
Os02g0789400 Oryza sativa ssp. japonica
Os06g0187900 Oryza sativa ssp. japonica
Peaxi162Scf00213g00074 Petunia axillaris
Peaxi162Scf01070g10014 Petunia axillaris
PGR044G0290 Punica granatum
PGR044G1683 Punica granatum
PGSC0003DMG400026319 Solanum tuberosum
PGSC0003DMG400029551 Solanum tuberosum
Phvul.001G060500 Phaseolus vulgaris
Potri.006G272400 Populus trichocarpa
Potri.018G009100 Populus trichocarpa
Potri.019G050600 Populus trichocarpa
Pp3c11_26740 Physcomitrium patens
Pp3c11_26750 Physcomitrium patens
Pp3c7_5100 Physcomitrium patens
Prupe.1G255900 Prunus persica
Prupe.1G458000 Prunus persica
Psat4g124760 Pisum sativum
Psat5g025200 Pisum sativum
Psat6g033480 Pisum sativum
PSO017G0839 Papaver somniferum
PSO063G7382 Papaver somniferum
PSO210G7375 Papaver somniferum
PSO339G3990 Papaver somniferum
PSO832G3145 Papaver somniferum
QL03p061754 Quercus lobata
QL12p025580 Quercus lobata
RcHm_v2.0_Chr4g0444111 Rosa chinensis
RcHm_v2.0_Chr6g0305171 Rosa chinensis
Rhsim12G0047700 Rhododendron simsii
Sabra06G0210900 Salix brachista
Sabra18G0013000 Salix brachista
Sabra18G0015900 Salix brachista
Sc04g0009060 Simmondsia chinensis
Sed0002165 Sechium edule
Sed0003104 Sechium edule
Sed0014750 Sechium edule
SEGI_08690 Sequoiadendron giganteum
SEGI_15270 Sequoiadendron giganteum
SEGI_20979 Sequoiadendron giganteum
SGA_v2.0_scaffold193G40673 Striga asiatica
SGA_v2.0_scaffold27G11680 Striga asiatica
SMO358G0573 Selaginella moellendorffii
Solyc08g069120.4 Solanum lycopersicum
Sopen08g002380 Solanum pennellii
Sopen08g022770 Solanum pennellii
Sp1g21210 Schrenkiella parvula
Sp4g03580 Schrenkiella parvula
Sp7g29410 Schrenkiella parvula
TAR374G0412 Trochodendron aralioides
TAR383G0175 Trochodendron aralioides
TAR622G1121 Trochodendron aralioides
TAR629G1957 Trochodendron aralioides
THA.LOC104822134 Tarenaya hassleriana
Thecc.02G245000 Theobroma cacao
Thecc.09G009100 Theobroma cacao
Thhalv10000328m.g Eutrema salsugineum
Thhalv10008869m.g Eutrema salsugineum
Thhalv10026315m.g Eutrema salsugineum
TPR.G12098 Trifolium pratense
TPR.G12387 Trifolium pratense
TPR.G21363 Trifolium pratense
TPR.G29247 Trifolium pratense
TPR.G31451 Trifolium pratense
TWI18G0921 Tripterygium wilfordii
TWI32G0597 Tripterygium wilfordii
TWI34G0699 Tripterygium wilfordii
TWI75G1551 Tripterygium wilfordii
unitig_37.g12914 Utricularia gibba
unitig_899.g14730 Utricularia gibba
vmacro00207 Vaccinium macrocarpon
vmacro01186 Vaccinium macrocarpon
VMungo0647G0190 Vigna mungo
Zm00001eb086150 Zea mays
Zm00001eb184410 Zea mays
Zm00001eb192700 Zea mays
Zm00001eb246800 Zea mays
Zm00001eb257500 Zea mays
Zm00001eb374380 Zea mays

User provided reference genes

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