Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p15520 Brassica napus
A08p29820 Brassica napus
Aa31LG4G5310 Aethionema arabicum
Aa31LG7G4060 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.375 Anthoceros agrestis
Actinidia00516 Actinidia chinensis
Actinidia00517 Actinidia chinensis
Actinidia15311 Actinidia chinensis
Actinidia22559 Actinidia chinensis
Ah.04g158640 Amaranthus hybridus
Ah.06g188040 Amaranthus hybridus
Ah.06g195980 Amaranthus hybridus
AL1G31950 Arabidopsis lyrata
AL2G35000 Arabidopsis lyrata
AL2G35010 Arabidopsis lyrata
Aqoxy6G01035 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.N4C0KW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SWJI85 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VV0ABD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XL0EPP Arachis hypogaea
AT1G19360 Arabidopsis thaliana
AT1G75110 Arabidopsis thaliana
AT1G75120 Arabidopsis thaliana
ATR0733G198 Amborella trichopoda
Atru.chr13.520 Acer truncatum
Atru.chr13.526 Acer truncatum
Atru.chr5.2954 Acer truncatum
AUR62041249 Chenopodium quinoa
AUR62041937 Chenopodium quinoa
AUR62042843 Chenopodium quinoa
BcaB02g06993 Brassica carinata
BcaB02g06999 Brassica carinata
BcaB03g12916 Brassica carinata
BcaB03g14449 Brassica carinata
BcaB07g31958 Brassica carinata
BcaC07g41259 Brassica carinata
BcaC07g41260 Brassica carinata
BcaNung07224 Brassica carinata
BcaNung07257 Brassica carinata
BolC5t30481H Brassica oleracea
BolC6t38405H Brassica oleracea
BolC8t49568H Brassica oleracea
BolC8t51823H Brassica oleracea
BraA06t24664Z Brassica rapa
BraA08t34917Z Brassica rapa
C05p17760 Brassica napus
C06p32840 Brassica napus
C08p19430 Brassica napus
C08p42620 Brassica napus
CAN.G1126.31 Capsicum annuum
CAN.G1139.8 Capsicum annuum
CANSAT25G2937 Cannabis sativa
CANSAT56G0350 Cannabis sativa
CARHR019950 Cardamine hirsuta
CARHR068430 Cardamine hirsuta
Carub.0001s1895 Capsella rubella
Carub.0002s2189 Capsella rubella
Carub.0002s2190 Capsella rubella
Carub.0002s2193 Capsella rubella
Ca_13344_v3 Cicer arietinum L.
Ca_20852_v3 Cicer arietinum L.
CBR_g4005 Chara braunii
CBR_g4006 Chara braunii
Cc02_g17830 Coffea canephora
Cc10_g03170 Coffea canephora
CDE01G0064 Ceratophyllum demersum
Cfa005029 Carpinus fangiana
Cfa018428 Carpinus fangiana
Ciclev10001254m.g Citrus clementina
CiPaw.05G061800 Carya illinoinensis
CiPaw.06G137500 Carya illinoinensis
CiPaw.16G054800 Carya illinoinensis
ClCG02G005240 Citrullus lanatus
ClCG05G019170 Citrullus lanatus
COL.COLO4_26352 Corchorus olitorius
COL.COLO4_32450 Corchorus olitorius
Cpa.g.sc62.116 Carica papaya
Cpa.g.sc64.63 Carica papaya
Cre02.g111000 Chlamydomonas reinhardtii
Cre06.g288500 Chlamydomonas reinhardtii
Cre11.g480851 Chlamydomonas reinhardtii
CsaV3_3G044930 Cucumis sativus L.
CsaV3_7G023280 Cucumis sativus L.
CSS0045038 Camellia sinensis var. sinensis
CSS0048606 Camellia sinensis var. sinensis
DCAR_003636 Daucus carota
DCAR_012747 Daucus carota
Dinv23549 Davidia involucrata
Dinv36056 Davidia involucrata
Dinv39396 Davidia involucrata
Duzib132G0400 Durio zibethinus
Duzib248G1160 Durio zibethinus
ECA232G4221 Erigeron canadensis
ECA232G4440 Erigeron canadensis
ECA246G5338 Erigeron canadensis
EL10Ac2g03493 Beta vulgaris
EL10Ac3g05175 Beta vulgaris
Eucgr.F01547 Eucalyptus grandis
Eucgr.I01249 Eucalyptus grandis
Eucgr.I01250 Eucalyptus grandis
Eucgr.I01251 Eucalyptus grandis
FAN02G0460 Fragaria x ananassa
FAN02G0826 Fragaria x ananassa
FAN09G1834 Fragaria x ananassa
FAN15G2947 Fragaria x ananassa
FAN15G3307 Fragaria x ananassa
FAN16G2399 Fragaria x ananassa
FAN24G2933 Fragaria x ananassa
FAN25G0209 Fragaria x ananassa
FAN27G1964 Fragaria x ananassa
FAN28G1560 Fragaria x ananassa
FAN28G2722 Fragaria x ananassa
FvH4_2g08270 Fragaria vesca
FvH4_2g40081 Fragaria vesca
Glyma.11G119800 Glycine max
Glyma.12G045000 Glycine max
Glyma.14G076600 Glycine max
Glyma.15G229700 Glycine max
Glyma.17G249200 Glycine max
Gohir.A04G117300 Gossypium hirsutum
Gohir.A06G011300 Gossypium hirsutum
Gohir.D04G159000 Gossypium hirsutum
Gohir.D06G008700 Gossypium hirsutum
Gorai.010G011500 Gossypium raimondii
Gorai.012G146400 Gossypium raimondii
GSVIVG01009666001 Vitis vinifera
GSVIVG01031309001 Vitis vinifera
HanXRQChr05g0151811 Helianthus annuus
HanXRQChr08g0223581 Helianthus annuus
HanXRQChr09g0268571 Helianthus annuus
Haze_02357 Corylus avellana
Haze_17635 Corylus avellana
Hma1.2p1_0023F.1_g014940 Hydrangea macrophylla
Hma1.2p1_0203F.1_g086570 Hydrangea macrophylla
Hma1.2p1_2394F.1_g321270 Hydrangea macrophylla
HPP92_015181 Vanilla planifolia
Hund14807 Selenicereus undatus
Lalb_Chr03g0025781 Lupinus albus
Lalb_Chr14g0369121 Lupinus albus
Lalb_Chr24g0399031 Lupinus albus
Lj3g0005448 Lotus japonicus
Lj4A43T53 Lonicera japonica
Lj4A783T82 Lonicera japonica
Lj5g0014462 Lotus japonicus
Lj9A366G76 Lonicera japonica
Lsat_1_v5_gn_5_29281 Lactuca sativa
Manes.15G167000 Manihot esculenta
Manes.18G029000 Manihot esculenta
Mapoly0050s0027 Marchantia polymorpha
MBI16_g37293_MAGBIO Magnolia biondii
MCO09G484 Micromonas commoda
MCO11G608 Micromonas commoda
MCO14G429 Micromonas commoda
MCO14G449 Micromonas commoda
MD05G1070100 Malus domestica
MD05G1070200 Malus domestica
MD08G1032600 Malus domestica
MD10G1080700 Malus domestica
MD15G1029300 Malus domestica
Medtr1g022025 Medicago truncatula
Medtr4g069260 Medicago truncatula
Medtr4g069280 Medicago truncatula
Medtr4g069300 Medicago truncatula
Medtr4g069350 Medicago truncatula
Medtr4g069390 Medicago truncatula
Medtr4g069410 Medicago truncatula
Medtr4g069420 Medicago truncatula
Medtr4g069430 Medicago truncatula
MELO3C003877.2 Cucumis melo
MELO3C012562.2 Cucumis melo
Migut.B00259 Erythranthe guttata
Migut.C00701 Erythranthe guttata
Migut.N00504 Erythranthe guttata
MSTRG.20104 Avicennia marina
MSTRG.24299 Avicennia marina
MSTRG.25156 Avicennia marina
Nitab4.5_0000110g0430 Nicotiana tabacum
Nitab4.5_0000790g0120 Nicotiana tabacum
Nitab4.5_0002296g0010 Nicotiana tabacum
Nitab4.5_0003246g0010 Nicotiana tabacum
Nitab4.5_0003461g0030 Nicotiana tabacum
Nn1g05080 Nelumbo nucifera
Nn5g29528 Nelumbo nucifera
Oeu019076.1 Olea europaea
Oeu038855.1 Olea europaea
Os04g0168300 Oryza sativa ssp. japonica
Os07g0587100 Oryza sativa ssp. japonica
Peaxi162Scf00057g00420 Petunia axillaris
Peaxi162Scf00064g00333 Petunia axillaris
Peaxi162Scf00131g00015 Petunia axillaris
PGR083G0320 Punica granatum
PGR083G2270 Punica granatum
PGSC0003DMG400005150 Solanum tuberosum
PGSC0003DMG400015454 Solanum tuberosum
PGSC0003DMG403005966 Solanum tuberosum
Phvul.001G015800 Phaseolus vulgaris
Phvul.011G047000 Phaseolus vulgaris
Potri.002G134400 Populus trichocarpa
Potri.009G113300 Populus trichocarpa
Potri.014G042700 Populus trichocarpa
Pp3c12_4670 Physcomitrium patens
Pp3c13_20260 Physcomitrium patens
Pp3c3_26530 Physcomitrium patens
PRCOL_00002793 Prasinoderma coloniale
PRCOL_00003026 Prasinoderma coloniale
PRCOL_00004509 Prasinoderma coloniale
Prupe.1G382100 Prunus persica
Prupe.8G102000 Prunus persica
Psat0s4054g0040 Pisum sativum
Psat6g007360 Pisum sativum
PSO541G3416 Papaver somniferum
PSO675G5914 Papaver somniferum
QL01p055679 Quercus lobata
QL02p007764 Quercus lobata
QL02p007787 Quercus lobata
QL11p042787 Quercus lobata
RcHm_v2.0_Chr6g0263151 Rosa chinensis
RcHm_v2.0_Chr6g0300661 Rosa chinensis
Rhsim06G0035500 Rhododendron simsii
Rhsim07G0031500 Rhododendron simsii
Sabra09G0086600 Salix brachista
Sabra14G0031000 Salix brachista
SalBow6G1111 Salvia bowleyana
SalBow6G6828 Salvia bowleyana
SalBow8G0066 Salvia bowleyana
SalBow8G2900 Salvia bowleyana
Sc02g0006400 Simmondsia chinensis
Sc15g0006830 Simmondsia chinensis
Sed0007320 Sechium edule
Sed0019987 Sechium edule
Sed0020401 Sechium edule
SEGI_28190 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10242 Striga asiatica
SGA_v2.0_scaffold326G48705 Striga asiatica
SGA_v2.0_scaffold374G50236 Striga asiatica
SGA_v2.0_scaffold58G20562 Striga asiatica
SMO140G0053 Selaginella moellendorffii
SMO215G0010 Selaginella moellendorffii
Solyc04g080080.3 Solanum lycopersicum
Solyc12g089080.3 Solanum lycopersicum
Sopen04g033670 Solanum pennellii
Sopen12g030960 Solanum pennellii
Sp1g17270 Schrenkiella parvula
Sp5g30240 Schrenkiella parvula
TAR376G0677 Trochodendron aralioides
TAR628G0779 Trochodendron aralioides
THA.LOC104806383 Tarenaya hassleriana
THA.LOC104809052 Tarenaya hassleriana
Thecc.02G122800 Theobroma cacao
Thecc.08G023400 Theobroma cacao
Thhalv10007712m.g Eutrema salsugineum
Thhalv10018600m.g Eutrema salsugineum
TPR.G28532 Trifolium pratense
TPR.G29751 Trifolium pratense
TWI31G0185 Tripterygium wilfordii
TWI31G0201 Tripterygium wilfordii
TWI31G0548 Tripterygium wilfordii
TWI31G0657 Tripterygium wilfordii
TWI36G1739 Tripterygium wilfordii
TWI56G0118 Tripterygium wilfordii
unitig_32.g11132 Utricularia gibba
vmacro21624 Vaccinium macrocarpon
VMungo0647G0023 Vigna mungo
VMungo1127G1577 Vigna mungo
Zm00001eb020870 Zea mays
Zm00001eb108100 Zea mays
Zm00001eb232900 Zea mays
Zm00001eb326030 Zea mays

User provided reference genes

Program Settings