Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p08460 Brassica napus
A10p03270 Brassica napus
Aa31LG1G19840 Aethionema arabicum
Aa31LG9G3920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1571 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3156 Anthoceros agrestis
Actinidia11448 Actinidia chinensis
Actinidia11449 Actinidia chinensis
Actinidia21982 Actinidia chinensis
Actinidia27493 Actinidia chinensis
Actinidia28988 Actinidia chinensis
Actinidia35850 Actinidia chinensis
Actinidia40475 Actinidia chinensis
AL1G14550 Arabidopsis lyrata
AL7G42770 Arabidopsis lyrata
Aqoxy2G03905 Aquilegia oxysepala
Aqoxy7G03693 Aquilegia oxysepala
Aqoxy7G03694 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.12MM49 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6KXF36 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7GI6SZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IA90BR Arachis hypogaea
AT1G04830 Arabidopsis thaliana
AT4G13730 Arabidopsis thaliana
ATR0609G056 Amborella trichopoda
ATR1120G041 Amborella trichopoda
Atru.chr4.1660 Acer truncatum
Atru.chr7.1144 Acer truncatum
AUR62011136 Chenopodium quinoa
AUR62013351 Chenopodium quinoa
AUR62018588 Chenopodium quinoa
AUR62020831 Chenopodium quinoa
AUR62043584 Chenopodium quinoa
AUR62043856 Chenopodium quinoa
BcaB02g08655 Brassica carinata
BcaB03g13470 Brassica carinata
BcaC02g09394 Brassica carinata
BcaC02g09583 Brassica carinata
BcaC05g24437 Brassica carinata
BcaC07g36878 Brassica carinata
BcaC07g37513 Brassica carinata
BolC3t14773H Brassica oleracea
BolC4t25798H Brassica oleracea
BolC4t26013H Brassica oleracea
BolC5t29080H Brassica oleracea
BolC8t47835H Brassica oleracea
BraA04t16536Z Brassica rapa
BraA10t42598Z Brassica rapa
C03p23840 Brassica napus
C04p42200 Brassica napus
C04p44410 Brassica napus
CAN.G1333.10 Capsicum annuum
CANSAT11G2526 Cannabis sativa
CARHR004220 Cardamine hirsuta
CARHR219520 Cardamine hirsuta
Carub.0001s0407 Capsella rubella
Carub.0007s2872 Capsella rubella
Ca_17970_v3 Cicer arietinum L.
Ca_21676_v3 Cicer arietinum L.
CBR_g41478 Chara braunii
Cc03_g07990 Coffea canephora
Cc06_g08430 Coffea canephora
CDE02G2497 Ceratophyllum demersum
CDE06G1022 Ceratophyllum demersum
Cfa003383 Carpinus fangiana
Cfa014908 Carpinus fangiana
Ciclev10004939m.g Citrus clementina
Ciclev10008229m.g Citrus clementina
CiPaw.01G119700 Carya illinoinensis
CiPaw.02G065700 Carya illinoinensis
CiPaw.03G244600 Carya illinoinensis
ClCG06G008070 Citrullus lanatus
COL.COLO4_20169 Corchorus olitorius
COL.COLO4_35116 Corchorus olitorius
Cpa.g.sc332.4 Carica papaya
Cpa.g.sc390.8 Carica papaya
Cpa.g.sc83.12 Carica papaya
Cre03.g195700 Chlamydomonas reinhardtii
CsaV3_2G011120 Cucumis sativus L.
CSS0000796 Camellia sinensis var. sinensis
CSS0022307 Camellia sinensis var. sinensis
DCAR_024463 Daucus carota
DCAR_026625 Daucus carota
Dinv27221 Davidia involucrata
Dinv36521 Davidia involucrata
Dinv38216 Davidia involucrata
Dinv41505 Davidia involucrata
Duzib151G0193 Durio zibethinus
Duzib168G1193 Durio zibethinus
Duzib268G0317 Durio zibethinus
ECA233G2105 Erigeron canadensis
ECA238G0003 Erigeron canadensis
ECA248G3656 Erigeron canadensis
EL10Ac3g07479 Beta vulgaris
EL10Ac8g18664 Beta vulgaris
Eucgr.C01180 Eucalyptus grandis
Eucgr.C01535 Eucalyptus grandis
Eucgr.H00044 Eucalyptus grandis
Eucgr.H02770 Eucalyptus grandis
FAN07G2651 Fragaria x ananassa
FAN12G0343 Fragaria x ananassa
FAN17G2246 Fragaria x ananassa
FAN19G2354 Fragaria x ananassa
FAN22G1042 Fragaria x ananassa
FAN23G1776 Fragaria x ananassa
FAN28G2635 Fragaria x ananassa
FvH4_1g03180 Fragaria vesca
FvH4_4g13770 Fragaria vesca
Glyma.05G153900 Glycine max
Glyma.08G111600 Glycine max
Glyma.11G255600 Glycine max
Glyma.13G166600 Glycine max
Glyma.17G114400 Glycine max
Glyma.18G001500 Glycine max
Glyma.19G081800 Glycine max
Gohir.A02G021100 Gossypium hirsutum
Gohir.A03G094900 Gossypium hirsutum
Gohir.A05G016100 Gossypium hirsutum
Gohir.D02G025300 Gossypium hirsutum
Gohir.D05G017200 Gossypium hirsutum
Gorai.005G031200 Gossypium raimondii
Gorai.005G129700 Gossypium raimondii
Gorai.009G017400 Gossypium raimondii
GSVIVG01015541001 Vitis vinifera
GSVIVG01020911001 Vitis vinifera
HanXRQChr01g0022431 Helianthus annuus
HanXRQChr13g0420951 Helianthus annuus
Haze_11619 Corylus avellana
Haze_25569 Corylus avellana
Hma1.2p1_0187F.1_g082370 Hydrangea macrophylla
Hma1.2p1_2881F.1_g329840 Hydrangea macrophylla
HPP92_016391 Vanilla planifolia
Hund09247 Selenicereus undatus
Lalb_Chr12g0205511 Lupinus albus
Lalb_Chr13g0294871 Lupinus albus
Lalb_Chr23g0278441 Lupinus albus
Lj3A402G9 Lonicera japonica
Lj3A409G16 Lonicera japonica
Lj4g0000869 Lotus japonicus
Lj4g0016900 Lotus japonicus
Lj6A528G36 Lonicera japonica
Lj6g0007266 Lotus japonicus
Lsat_1_v5_gn_2_46200 Lactuca sativa
Lsat_1_v5_gn_6_61121 Lactuca sativa
Manes.03G146500 Manihot esculenta
Manes.14G132800 Manihot esculenta
Mapoly0140s0008 Marchantia polymorpha
MBI04_g07836_MAGBIO Magnolia biondii
MBI11_g07437_MAGBIO Magnolia biondii
MD02G1030800 Malus domestica
MD04G1012300 Malus domestica
MD13G1283700 Malus domestica
Medtr3g083840 Medicago truncatula
Medtr4g114580 Medicago truncatula
Medtr8g085300 Medicago truncatula
MELO3C020360.2 Cucumis melo
Migut.G00712 Erythranthe guttata
Migut.N00401 Erythranthe guttata
MSTRG.9812 Avicennia marina
Nitab4.5_0000401g0060 Nicotiana tabacum
Nitab4.5_0003714g0070 Nicotiana tabacum
Nitab4.5_0004447g0020 Nicotiana tabacum
Nitab4.5_0006210g0030 Nicotiana tabacum
Nn1g07934 Nelumbo nucifera
Nn3g16087 Nelumbo nucifera
Nn3g20008 Nelumbo nucifera
Nn8g39464 Nelumbo nucifera
Oeu049039.1 Olea europaea
Oeu055769.1 Olea europaea
Os01g0908100 Oryza sativa ssp. japonica
Peaxi162Scf00047g00423 Petunia axillaris
Peaxi162Scf00047g00424 Petunia axillaris
Peaxi162Scf00753g00336 Petunia axillaris
PGR083G2515 Punica granatum
PGR142G3626 Punica granatum
PGR142G4318 Punica granatum
PGSC0003DMG400003080 Solanum tuberosum
PGSC0003DMG400015757 Solanum tuberosum
PGSC0003DMG400026413 Solanum tuberosum
Phvul.001G267600 Phaseolus vulgaris
Phvul.003G165100 Phaseolus vulgaris
Phvul.003G291100 Phaseolus vulgaris
Potri.001G316700 Populus trichocarpa
Potri.006G069300 Populus trichocarpa
Potri.017G057100 Populus trichocarpa
Potri.018G131300 Populus trichocarpa
Pp3c20_8750 Physcomitrium patens
Pp3c24_6830 Physcomitrium patens
Pp3c8_10390 Physcomitrium patens
PRCOL_00001100 Prasinoderma coloniale
Prupe.1G158400 Prunus persica
Prupe.7G243700 Prunus persica
Psat0s3599g0040 Pisum sativum
Psat0s3599g0080 Pisum sativum
Psat4g039880 Pisum sativum
Psat5g102160 Pisum sativum
Psat5g102200 Pisum sativum
Psat5g176880 Pisum sativum
Psat7g074200 Pisum sativum
PSO017G2637 Papaver somniferum
PSO063G4834 Papaver somniferum
QL02p088596 Quercus lobata
QL06p025294 Quercus lobata
QL11p053954 Quercus lobata
RcHm_v2.0_Chr2g0088311 Rosa chinensis
RcHm_v2.0_Chr4g0414611 Rosa chinensis
Rhsim02G0059700 Rhododendron simsii
Rhsim09G0058100 Rhododendron simsii
RhsimUnG0194100 Rhododendron simsii
Sabra03G0063700 Salix brachista
Sabra04G0021800 Salix brachista
Sabra06G0051700 Salix brachista
Sabra06G0195800 Salix brachista
Sabra08G0069000 Salix brachista
Sabra17G0048600 Salix brachista
Sabra17G0050300 Salix brachista
SalBow3G0327 Salvia bowleyana
SalBow8G3965 Salvia bowleyana
SalBow8G4524 Salvia bowleyana
Sc08g0006570 Simmondsia chinensis
Sc13g0000220 Simmondsia chinensis
Sc19g0007190 Simmondsia chinensis
Sed0012712 Sechium edule
Sed0012786 Sechium edule
SEGI_03849 Sequoiadendron giganteum
SEGI_10347 Sequoiadendron giganteum
SEGI_28074 Sequoiadendron giganteum
SGA_v2.0_scaffold128G34110 Striga asiatica
SHI01048 Sapria himalayana
SMO011G0019 Selaginella moellendorffii
SMO228G0060 Selaginella moellendorffii
Solyc02g071420.4 Solanum lycopersicum
Solyc05g053710.4 Solanum lycopersicum
Solyc09g092070.4 Solanum lycopersicum
Sopen02g020470 Solanum pennellii
Sopen05g032190 Solanum pennellii
Sopen09g034940 Solanum pennellii
Sp1g03670 Schrenkiella parvula
Sp7g11510 Schrenkiella parvula
TAR362G1010 Trochodendron aralioides
TAR363G0001 Trochodendron aralioides
TAR633G0345 Trochodendron aralioides
TAR636G2868 Trochodendron aralioides
THA.LOC104801023 Tarenaya hassleriana
THA.LOC104804810 Tarenaya hassleriana
THA.LOC104808707 Tarenaya hassleriana
THA.LOC104816027 Tarenaya hassleriana
Thecc.04G200600 Theobroma cacao
Thecc.09G127200 Theobroma cacao
Thhalv10007609m.g Eutrema salsugineum
Thhalv10025184m.g Eutrema salsugineum
TPR.G11808 Trifolium pratense
TPR.G14698 Trifolium pratense
TPR.G26493 Trifolium pratense
TWI09G1504 Tripterygium wilfordii
TWI34G2015 Tripterygium wilfordii
unitig_899.g14868 Utricularia gibba
vmacro00461 Vaccinium macrocarpon
vmacro15550 Vaccinium macrocarpon
vmacro20562 Vaccinium macrocarpon
VMungo0251G2568 Vigna mungo
VMungo0251G2916 Vigna mungo
VMungo1215G2698 Vigna mungo
VMungo1383G2010 Vigna mungo
Zm00001eb144130 Zea mays
Zm00001eb165050 Zea mays
Zm00001eb169800 Zea mays
Zm00001eb365390 Zea mays
Zm00001eb420710 Zea mays

User provided reference genes

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