Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p07120 Brassica napus
A08p18900 Brassica napus
A08p36800 Brassica napus
A08p36820 Brassica napus
A10p03070 Brassica napus
Aa31LG1G20230 Aethionema arabicum
Aa31LG2G19270 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2173 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1505 Anthoceros agrestis
Actinidia39375 Actinidia chinensis
Ah.04g161710 Amaranthus hybridus
Ah.06g193330 Amaranthus hybridus
AL1G14330 Arabidopsis lyrata
AL1G53870 Arabidopsis lyrata
AL2G20100 Arabidopsis lyrata
AL7G21020 Arabidopsis lyrata
Aqoxy3G00917 Aquilegia oxysepala
Aqoxy6G00960 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A6BGRK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EBKF2Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EC3K4Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IPP45T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JWFJ3V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LC5CIX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PMC9AK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y60BUA Arachis hypogaea
AT1G04640 Arabidopsis thaliana
AT1G47578 Arabidopsis thaliana
AT4G31050 Arabidopsis thaliana
ATR0307G043 Amborella trichopoda
ATR0307G126 Amborella trichopoda
ATR0733G118 Amborella trichopoda
Atru.chr13.576 Acer truncatum
Atru.chr3.2466 Acer truncatum
AUR62008526 Chenopodium quinoa
AUR62019226 Chenopodium quinoa
AUR62021564 Chenopodium quinoa
AUR62023962 Chenopodium quinoa
AUR62024019 Chenopodium quinoa
AUR62031756 Chenopodium quinoa
BcaB03g12674 Brassica carinata
BcaC01g01116 Brassica carinata
BcaC07g36894 Brassica carinata
BcaC07g36899 Brassica carinata
BcaC09g51892 Brassica carinata
BcaNung03418 Brassica carinata
BolC1t00775H Brassica oleracea
BolC3t21140H Brassica oleracea
BolC5t29066H Brassica oleracea
BolC8t46934H Brassica oleracea
BolC8t46940H Brassica oleracea
BraA01t00664Z Brassica rapa
BraA08t35583Z Brassica rapa
BraA10t42580Z Brassica rapa
C01p07880 Brassica napus
C03p88310 Brassica napus
C05p02830 Brassica napus
C08p01270 Brassica napus
C08p01320 Brassica napus
CAN.G1058.18 Capsicum annuum
CAN.G1058.20 Capsicum annuum
CAN.G371.115 Capsicum annuum
CANSAT56G2411 Cannabis sativa
CARHR004000 Cardamine hirsuta
CARHR037210 Cardamine hirsuta
CARHR238960 Cardamine hirsuta
Carub.0001s0388 Capsella rubella
Carub.0001s3634 Capsella rubella
Carub.0007s0947 Capsella rubella
Ca_02939_v3 Cicer arietinum L.
Ca_15531_v3 Cicer arietinum L.
CBR_g18683 Chara braunii
CBR_g38019 Chara braunii
Cc01_g03820 Coffea canephora
Cc07_g16250 Coffea canephora
CDE09G0839 Ceratophyllum demersum
CDE09G0871 Ceratophyllum demersum
Cfa020647 Carpinus fangiana
Ciclev10002047m.g Citrus clementina
Ciclev10016532m.g Citrus clementina
CiPaw.06G110100 Carya illinoinensis
CiPaw.13G168200 Carya illinoinensis
CiPaw.16G052500 Carya illinoinensis
ClCG03G013630 Citrullus lanatus
COL.COLO4_10387 Corchorus olitorius
COL.COLO4_26393 Corchorus olitorius
Cpa.g.sc64.28 Carica papaya
Cre01.g010350 Chlamydomonas reinhardtii
Cre16.g675250 Chlamydomonas reinhardtii
CsaV3_1G042440 Cucumis sativus L.
CsaV3_5G035090 Cucumis sativus L.
CSS0015735 Camellia sinensis var. sinensis
CSS0016162 Camellia sinensis var. sinensis
CSS0023444 Camellia sinensis var. sinensis
CSS0034709 Camellia sinensis var. sinensis
CSS0035740 Camellia sinensis var. sinensis
CSS0037792 Camellia sinensis var. sinensis
CSS0040450 Camellia sinensis var. sinensis
CSS0045600 Camellia sinensis var. sinensis
CSS0046228 Camellia sinensis var. sinensis
DCAR_019427 Daucus carota
DCAR_019493 Daucus carota
Dinv08058 Davidia involucrata
Dinv29831 Davidia involucrata
Dinv29837 Davidia involucrata
Duzib041G0147 Durio zibethinus
Duzib168G1104 Durio zibethinus
ECA232G3633 Erigeron canadensis
ECA233G1816 Erigeron canadensis
EL10Ac5g11128 Beta vulgaris
Eucgr.B02601 Eucalyptus grandis
Eucgr.H02545 Eucalyptus grandis
FAN11G0540 Fragaria x ananassa
FAN15G1231 Fragaria x ananassa
FAN20G2779 Fragaria x ananassa
FAN24G0239 Fragaria x ananassa
FAN25G3049 Fragaria x ananassa
FAN27G1995 Fragaria x ananassa
FvH4_2g26090 Fragaria vesca
FvH4_3g43830 Fragaria vesca
Glyma.04G034800 Glycine max
Glyma.08G314300 Glycine max
Glyma.10G256700 Glycine max
Glyma.18G099900 Glycine max
Glyma.20G134600 Glycine max
Gohir.A05G197900 Gossypium hirsutum
Gohir.A13G215000 Gossypium hirsutum
Gohir.D05G200800 Gossypium hirsutum
Gohir.D13G218700 Gossypium hirsutum
Gorai.009G206100 Gossypium raimondii
Gorai.013G249500 Gossypium raimondii
GSVIVG01011051001 Vitis vinifera
GSVIVG01022768001 Vitis vinifera
GSVIVG01025351001 Vitis vinifera
HanXRQChr02g0056731 Helianthus annuus
HanXRQChr05g0141551 Helianthus annuus
HanXRQChr09g0268371 Helianthus annuus
Haze_17608 Corylus avellana
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla
HPP92_006661 Vanilla planifolia
HPP92_020226 Vanilla planifolia
Hund09910 Selenicereus undatus
Hund21661 Selenicereus undatus
Lalb_Chr02g0157531 Lupinus albus
Lalb_Chr21g0308061 Lupinus albus
Lj1A1064T34 Lonicera japonica
Lj1g0004451 Lotus japonicus
Lj1P432T20 Lonicera japonica
Lj1P433T22 Lonicera japonica
Lj1P433T23 Lonicera japonica
Lj4g0000942 Lotus japonicus
Lj5g0001405 Lotus japonicus
Lsat_1_v5_gn_4_122901 Lactuca sativa
Manes.05G166100 Manihot esculenta
Manes.14G015200 Manihot esculenta
Mapoly0010s0076 Marchantia polymorpha
Mapoly0078s0004 Marchantia polymorpha
MBI16_g31342_MAGBIO Magnolia biondii
MBI16_g45778_MAGBIO Magnolia biondii
MBI19_g15086_MAGBIO Magnolia biondii
MCO04G499 Micromonas commoda
MCO07G632 Micromonas commoda
MD06G1010800 Malus domestica
MD11G1020800 Malus domestica
Medtr1g106190 Medicago truncatula
Medtr3g111580 Medicago truncatula
MELO3C012322.2 Cucumis melo
MELO3C015679.2 Cucumis melo
Migut.N02287 Erythranthe guttata
Migut.N02680 Erythranthe guttata
MSTRG.225 Avicennia marina
MSTRG.24312 Avicennia marina
Nitab4.5_0000110g0070 Nicotiana tabacum
Nitab4.5_0000140g0030 Nicotiana tabacum
Nitab4.5_0004389g0090 Nicotiana tabacum
Nitab4.5_0009288g0040 Nicotiana tabacum
Nitab4.5_0009644g0010 Nicotiana tabacum
Nn6g34874 Nelumbo nucifera
Nn7g38029 Nelumbo nucifera
Oeu007983.1 Olea europaea
Oeu015608.1 Olea europaea
Oeu019097.1 Olea europaea
Os03g0321800 Oryza sativa ssp. japonica
Os12g0596000 Oryza sativa ssp. japonica
Peaxi162Scf00062g00142 Petunia axillaris
Peaxi162Scf00280g00077 Petunia axillaris
PGR031G0661 Punica granatum
PGR119G1645 Punica granatum
PGR119G2292 Punica granatum
PGSC0003DMG400010797 Solanum tuberosum
PGSC0003DMG400016886 Solanum tuberosum
PGSC0003DMG400031756 Solanum tuberosum
PGSC0003DMG400031780 Solanum tuberosum
Phvul.002G015200 Phaseolus vulgaris
Phvul.005G120000 Phaseolus vulgaris
Phvul.006G040300 Phaseolus vulgaris
Phvul.007G045700 Phaseolus vulgaris
Phvul.007G046000 Phaseolus vulgaris
Potri.001G014000 Populus trichocarpa
Potri.002G131000 Populus trichocarpa
Pp3c12_18570 Physcomitrium patens
Pp3c27_7140 Physcomitrium patens
PRCOL_00000083 Prasinoderma coloniale
PRCOL_00001966 Prasinoderma coloniale
Prupe.5G012900 Prunus persica
Prupe.6G017700 Prunus persica
Psat0s2724g0080 Pisum sativum
Psat5g144200 Pisum sativum
Psat6g214760 Pisum sativum
PSO017G5010 Papaver somniferum
PSO170G3695 Papaver somniferum
PSO170G5894 Papaver somniferum
PSO170G6637 Papaver somniferum
PSO675G9034 Papaver somniferum
PSO700G0184 Papaver somniferum
QL01p009075 Quercus lobata
QL02p010939 Quercus lobata
QL04p005174 Quercus lobata
QL04p005176 Quercus lobata
RcHm_v2.0_Chr5g0074221 Rosa chinensis
RcHm_v2.0_Chr5g0079311 Rosa chinensis
RcHm_v2.0_Chr6g0294461 Rosa chinensis
Rhsim06G0039300 Rhododendron simsii
Rhsim08G0075100 Rhododendron simsii
Sabra02G0103000 Salix brachista
Sabra03G0155200 Salix brachista
SalBow2G2702 Salvia bowleyana
SalBow7G0739 Salvia bowleyana
Sc02g0006690 Simmondsia chinensis
Sc16g0011880 Simmondsia chinensis
Sed0000230 Sechium edule
Sed0016228 Sechium edule
SEGI_03744 Sequoiadendron giganteum
SEGI_06323 Sequoiadendron giganteum
SGA_v2.0_scaffold14G07044 Striga asiatica
SGA_v2.0_scaffold304G47925 Striga asiatica
SGA_v2.0_scaffold456G51922 Striga asiatica
SHI03518 Sapria himalayana
SHI04962 Sapria himalayana
SMO118G0246 Selaginella moellendorffii
SMO146G0125 Selaginella moellendorffii
SMO351G0240 Selaginella moellendorffii
Solyc02g077460.3 Solanum lycopersicum
Solyc04g049460.2 Solanum lycopersicum
Solyc04g079750.4 Solanum lycopersicum
Sopen02g022370 Solanum pennellii
Sopen04g033330 Solanum pennellii
Sp1g03480 Schrenkiella parvula
Sp1g34610 Schrenkiella parvula
Sp4g14620 Schrenkiella parvula
Sp7g28930 Schrenkiella parvula
TAR376G0282 Trochodendron aralioides
TAR573G0004 Trochodendron aralioides
TAR628G0023 Trochodendron aralioides
TAR628G1629 Trochodendron aralioides
TAR629G0042 Trochodendron aralioides
TAR636G2535 Trochodendron aralioides
TAR636G2973 Trochodendron aralioides
TAR636G3466 Trochodendron aralioides
THA.LOC104801054 Tarenaya hassleriana
THA.LOC104803396 Tarenaya hassleriana
Thecc.08G019900 Theobroma cacao
Thecc.09G219400 Theobroma cacao
Thhalv10009297m.g Eutrema salsugineum
Thhalv10025943m.g Eutrema salsugineum
TPR.G10101 Trifolium pratense
TPR.G12442 Trifolium pratense
TPR.G21143 Trifolium pratense
TPR.G21549 Trifolium pratense
TWI32G0621 Tripterygium wilfordii
TWI56G0576 Tripterygium wilfordii
unitig_52.g16825 Utricularia gibba
unitig_52.g16826 Utricularia gibba
unitig_52.g17159 Utricularia gibba
vmacro12719 Vaccinium macrocarpon
vmacro21025 Vaccinium macrocarpon
vmacro21593 Vaccinium macrocarpon
vmacro21595 Vaccinium macrocarpon
VMungo0540G1795 Vigna mungo
VMungo0720G0059 Vigna mungo
Zm00001eb030760 Zea mays
Zm00001eb295550 Zea mays

User provided reference genes

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