Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p02240 Brassica napus
A06p28540 Brassica napus
A07p24580 Brassica napus
A09p51600 Brassica napus
Aa31LG10G13640 Aethionema arabicum
Aa31LG11G1630 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1887 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.728 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2602 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3318 Anthoceros agrestis
Actinidia17218 Actinidia chinensis
Actinidia18297 Actinidia chinensis
Actinidia25516 Actinidia chinensis
Actinidia25517 Actinidia chinensis
Actinidia35895 Actinidia chinensis
Ah.02g125960 Amaranthus hybridus
Ah.14g080520 Amaranthus hybridus
AL5G41160 Arabidopsis lyrata
AL8G38630 Arabidopsis lyrata
AL8G38640 Arabidopsis lyrata
Aqoxy3G02681 Aquilegia oxysepala
Aqoxy4G02033 Aquilegia oxysepala
Aqoxy7G03180 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.87IZMR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0EKGJ Arachis hypogaea
AT3G59280 Arabidopsis thaliana
AT5G61865 Arabidopsis thaliana
AT5G61880 Arabidopsis thaliana
ATR0048G014 Amborella trichopoda
Atru.chr2.197 Acer truncatum
Atru.chr3.1647 Acer truncatum
Atru.chr6.1919 Acer truncatum
Atru.chr6.1922 Acer truncatum
Atru.chr6.1924 Acer truncatum
AUR62003303 Chenopodium quinoa
AUR62016197 Chenopodium quinoa
AUR62016282 Chenopodium quinoa
AUR62039291 Chenopodium quinoa
AUR62044026 Chenopodium quinoa
BcaB02g07476 Brassica carinata
BcaB02g08228 Brassica carinata
BcaB02g09608 Brassica carinata
BcaC01g02442 Brassica carinata
BcaC01g02443 Brassica carinata
BcaC02g10049 Brassica carinata
BcaC07g40320 Brassica carinata
BcaC07g40464 Brassica carinata
BcaC08g44975 Brassica carinata
BolC3t18778H Brassica oleracea
BolC4t24915H Brassica oleracea
BolC6t37768H Brassica oleracea
BolC8t51036H Brassica oleracea
BraA06t25800Z Brassica rapa
BraA07t30103Z Brassica rapa
BraA09t40599Z Brassica rapa
C03p65250 Brassica napus
C06p26030 Brassica napus
C08p34370 Brassica napus
CAN.G1089.21 Capsicum annuum
CAN.G480.14 Capsicum annuum
CAN.G940.1 Capsicum annuum
CANSAT01G0017 Cannabis sativa
CANSAT01G1459 Cannabis sativa
CARHR169660 Cardamine hirsuta
CARHR275630 Cardamine hirsuta
CARHR275640 Cardamine hirsuta
Carub.0005s2602 Capsella rubella
Carub.0008s2256 Capsella rubella
Ca_04513_v3 Cicer arietinum L.
Ca_17902_v3 Cicer arietinum L.
CBR_g6531 Chara braunii
Cc03_g11120 Coffea canephora
Cc04_g05840 Coffea canephora
Cc04_g05850 Coffea canephora
CDE04G1966 Ceratophyllum demersum
CDE10G0459 Ceratophyllum demersum
CDE11G1259 Ceratophyllum demersum
Ciclev10022920m.g Citrus clementina
Ciclev10033104m.g Citrus clementina
Ciclev10033782m.g Citrus clementina
CiPaw.01G105400 Carya illinoinensis
CiPaw.02G057200 Carya illinoinensis
ClCG01G010310 Citrullus lanatus
ClCG06G015930 Citrullus lanatus
COL.COLO4_24359 Corchorus olitorius
COL.COLO4_37258 Corchorus olitorius
COL.COLO4_37262 Corchorus olitorius
Cpa.g.sc13.176 Carica papaya
Cpa.g.sc13.177 Carica papaya
Cpa.g.sc13.178 Carica papaya
Cpa.g.sc14.50 Carica papaya
Cre09.g412300 Chlamydomonas reinhardtii
CsaV3_1G002620 Cucumis sativus L.
CsaV3_1G017160 Cucumis sativus L.
CSS0012862 Camellia sinensis var. sinensis
CSS0015823 Camellia sinensis var. sinensis
CSS0028573 Camellia sinensis var. sinensis
CSS0044795 Camellia sinensis var. sinensis
CSS0048684 Camellia sinensis var. sinensis
DCAR_006856 Daucus carota
DCAR_025647 Daucus carota
DCAR_031179 Daucus carota
Dinv13716 Davidia involucrata
Dinv13719 Davidia involucrata
Dinv22671 Davidia involucrata
Dinv44224 Davidia involucrata
Duzib151G0323 Durio zibethinus
Duzib205G0782 Durio zibethinus
Duzib205G1981 Durio zibethinus
Duzib268G1411 Durio zibethinus
ECA233G1160 Erigeron canadensis
ECA233G1437 Erigeron canadensis
EL10Ac3g05489 Beta vulgaris
EL10Ac6g14756 Beta vulgaris
Eucgr.A00221 Eucalyptus grandis
Eucgr.H00433 Eucalyptus grandis
Eucgr.L00545 Eucalyptus grandis
FAN04G0281 Fragaria x ananassa
FAN04G1258 Fragaria x ananassa
FAN07G1907 Fragaria x ananassa
FAN08G1259 Fragaria x ananassa
FAN08G1410 Fragaria x ananassa
FAN12G2680 Fragaria x ananassa
FAN13G1797 Fragaria x ananassa
FAN13G2170 Fragaria x ananassa
FAN18G1625 Fragaria x ananassa
FAN18G2616 Fragaria x ananassa
FAN18G3577 Fragaria x ananassa
FAN22G1463 Fragaria x ananassa
FvH4_4g11640 Fragaria vesca
FvH4_5g09530 Fragaria vesca
FvH4_5g09640 Fragaria vesca
Glyma.02G080100 Glycine max
Glyma.06G192000 Glycine max
Glyma.16G164700 Glycine max
Gohir.A07G046600 Gossypium hirsutum
Gohir.A09G210400 Gossypium hirsutum
Gohir.A10G135500 Gossypium hirsutum
Gohir.A12G193700 Gossypium hirsutum
Gohir.D07G050900 Gossypium hirsutum
Gohir.D09G203800 Gossypium hirsutum
Gohir.D10G131200 Gossypium hirsutum
Gohir.D12G196200 Gossypium hirsutum
Gorai.001G054000 Gossypium raimondii
Gorai.006G227700 Gossypium raimondii
Gorai.008G210700 Gossypium raimondii
Gorai.011G144800 Gossypium raimondii
GSVIVG01008650001 Vitis vinifera
GSVIVG01013542001 Vitis vinifera
HanXRQChr02g0057561 Helianthus annuus
HanXRQChr05g0155381 Helianthus annuus
HanXRQChr07g0186751 Helianthus annuus
HanXRQChr14g0432221 Helianthus annuus
Hma1.2p1_0452F.1_g155980 Hydrangea macrophylla
Hma1.2p1_0452F.1_g155990 Hydrangea macrophylla
Hma1.2p1_1477F.1_g285880 Hydrangea macrophylla
HPP92_008612 Vanilla planifolia
Hund03121 Selenicereus undatus
Hund11967 Selenicereus undatus
Lalb_Chr03g0035411 Lupinus albus
Lalb_Chr19g0130171 Lupinus albus
Lalb_Chr21g0305561 Lupinus albus
Lj2g0002734 Lotus japonicus
Lj3g0014528 Lotus japonicus
Lj5C86T8 Lonicera japonica
Lsat_1_v5_gn_1_71380 Lactuca sativa
Lsat_1_v5_gn_5_10020 Lactuca sativa
Lsat_1_v5_gn_6_56540 Lactuca sativa
Manes.04G050200 Manihot esculenta
Manes.14G044300 Manihot esculenta
Manes.14G044600 Manihot esculenta
Mapoly0085s0088 Marchantia polymorpha
MBI05_g20543_MAGBIO Magnolia biondii
MBI07_g35979_MAGBIO Magnolia biondii
MCO11G416 Micromonas commoda
MD04G1031200 Malus domestica
MD06G1129700 Malus domestica
MD14G1146800 Malus domestica
MD14G1147000 Malus domestica
Medtr1g098440 Medicago truncatula
Medtr4g116100 Medicago truncatula
Medtr6g037640 Medicago truncatula
MELO3C017198.2 Cucumis melo
MELO3C025561.2 Cucumis melo
Migut.D01181 Erythranthe guttata
Migut.D01182 Erythranthe guttata
Migut.I00623 Erythranthe guttata
MSTRG.4646 Avicennia marina
MSTRG.9372 Avicennia marina
Nitab4.5_0000025g0170 Nicotiana tabacum
Nitab4.5_0000970g0170 Nicotiana tabacum
Nitab4.5_0001841g0010 Nicotiana tabacum
Nitab4.5_0001942g0110 Nicotiana tabacum
Nitab4.5_0002584g0010 Nicotiana tabacum
Nitab4.5_0003259g0110 Nicotiana tabacum
Nitab4.5_0008403g0020 Nicotiana tabacum
Nitab4.5_0008858g0040 Nicotiana tabacum
Nn1g09783 Nelumbo nucifera
Nn4g22130 Nelumbo nucifera
Oeu005558.1 Olea europaea
Oeu006700.1 Olea europaea
Oeu013660.2 Olea europaea
Os01g0960800 Oryza sativa ssp. japonica
Os10g0479600 Oryza sativa ssp. japonica
Peaxi162Scf00135g01413 Petunia axillaris
Peaxi162Scf00207g00149 Petunia axillaris
Peaxi162Scf00213g00942 Petunia axillaris
PGR142G3256 Punica granatum
PGSC0003DMG400014448 Solanum tuberosum
PGSC0003DMG400014859 Solanum tuberosum
PGSC0003DMG400025578 Solanum tuberosum
PGSC0003DMG400029557 Solanum tuberosum
PGSC0003DMG400029559 Solanum tuberosum
Phvul.004G092000 Phaseolus vulgaris
Potri.012G108600 Populus trichocarpa
Potri.012G108900 Populus trichocarpa
Potri.014G151200 Populus trichocarpa
Potri.015G106600 Populus trichocarpa
Pp3c12_18000 Physcomitrium patens
Pp3c18_20580 Physcomitrium patens
Pp3c21_3010 Physcomitrium patens
PRCOL_00002529 Prasinoderma coloniale
Prupe.1G182300 Prunus persica
Prupe.1G182500 Prunus persica
Prupe.5G140800 Prunus persica
Prupe.5G141000 Prunus persica
Psat1g101080 Pisum sativum
PSO017G4866 Papaver somniferum
PSO017G4944 Papaver somniferum
PSO339G3582 Papaver somniferum
PSO478G0725 Papaver somniferum
PSO478G5218 Papaver somniferum
QL10p000420 Quercus lobata
QL10p000458 Quercus lobata
QL10p046393 Quercus lobata
RcHm_v2.0_Chr4g0408781 Rosa chinensis
RcHm_v2.0_Chr7g0188601 Rosa chinensis
RcHm_v2.0_Chr7g0188651 Rosa chinensis
Rhsim08G0197700 Rhododendron simsii
Rhsim08G0198000 Rhododendron simsii
Rhsim09G0035000 Rhododendron simsii
Sabra12G0079600 Salix brachista
Sabra12G0079800 Salix brachista
Sabra13G0033600 Salix brachista
Sabra14G0115000 Salix brachista
SalBow1G8312 Salvia bowleyana
SalBow3G3785 Salvia bowleyana
Sc07g0001540 Simmondsia chinensis
Sed0012338 Sechium edule
Sed0024640 Sechium edule
SEGI_02612 Sequoiadendron giganteum
SEGI_17585 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38549 Striga asiatica
SGA_v2.0_scaffold40G15682 Striga asiatica
SGA_v2.0_scaffold74G24650 Striga asiatica
SMO364G0086 Selaginella moellendorffii
SMO367G0737 Selaginella moellendorffii
Solyc03g081345.1 Solanum lycopersicum
Solyc06g068820.3 Solanum lycopersicum
Solyc08g006120.3 Solanum lycopersicum
Solyc08g069210.1 Solanum lycopersicum
Solyc12g042340.2 Solanum lycopersicum
Sopen03g022060 Solanum pennellii
Sopen03g022080 Solanum pennellii
Sopen06g026090 Solanum pennellii
Sopen08g002090 Solanum pennellii
Sopen08g022830 Solanum pennellii
Sopen12g021270 Solanum pennellii
Sp2g25060 Schrenkiella parvula
Sp2g25070 Schrenkiella parvula
Sp5g03820 Schrenkiella parvula
TAR622G1279 Trochodendron aralioides
TAR627G0746 Trochodendron aralioides
THA.LOC104801775 Tarenaya hassleriana
THA.LOC104802294 Tarenaya hassleriana
THA.LOC104805016 Tarenaya hassleriana
THA.LOC104818284 Tarenaya hassleriana
THA.LOC104819421 Tarenaya hassleriana
Thecc.03G140800 Theobroma cacao
Thecc.03G141000 Theobroma cacao
Thecc.04G182200 Theobroma cacao
Thhalv10005470m.g Eutrema salsugineum
Thhalv10005642m.g Eutrema salsugineum
Thhalv10006321m.g Eutrema salsugineum
TPR.G26505 Trifolium pratense
TPR.G28010 Trifolium pratense
TWI23G1291 Tripterygium wilfordii
TWI53G1559 Tripterygium wilfordii
TWI74G0425 Tripterygium wilfordii
unitig_747.g21318 Utricularia gibba
unitig_747.g21319 Utricularia gibba
vmacro00572 Vaccinium macrocarpon
vmacro19186 Vaccinium macrocarpon
vmacro21550 Vaccinium macrocarpon
VMungo0464G2165 Vigna mungo
Zm00001eb045680 Zea mays
Zm00001eb143680 Zea mays

User provided reference genes

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