Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00770 Brassica napus
A03p44650 Brassica napus
A03p65850 Brassica napus
Aa31LG6G15400 Aethionema arabicum
Aa31LG8G11420 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.449 Anthoceros agrestis
Actinidia06568 Actinidia chinensis
Actinidia20017 Actinidia chinensis
Actinidia35815 Actinidia chinensis
Ah.03g143530 Amaranthus hybridus
AL3G43000 Arabidopsis lyrata
AL7G12110 Arabidopsis lyrata
Aqoxy5G00150 Aquilegia oxysepala
Aqoxy5G01897 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3BEA17 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.73PCSA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9KCK2Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B8DRML Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BW091K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BXB75N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N8J3U5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q8WI26 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S0W5VV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V4LFQL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5XA6S Arachis hypogaea
AT2G05590 Arabidopsis thaliana
AT4G39870 Arabidopsis thaliana
ATR0753G055 Amborella trichopoda
ATR0787G012 Amborella trichopoda
Atru.chr4.1921 Acer truncatum
Atru.chr4.66 Acer truncatum
AUR62002011 Chenopodium quinoa
AUR62003791 Chenopodium quinoa
AUR62016168 Chenopodium quinoa
AUR62035084 Chenopodium quinoa
BcaB02g08312 Brassica carinata
BcaB06g25792 Brassica carinata
BcaB06g26845 Brassica carinata
BcaB08g34504 Brassica carinata
BcaB08g35126 Brassica carinata
BcaC01g03157 Brassica carinata
BcaC06g35922 Brassica carinata
BcaNung00908 Brassica carinata
BcaNung02303 Brassica carinata
BcaNung02304 Brassica carinata
BcaNung03403 Brassica carinata
BcaNung06393 Brassica carinata
BolC1t00089H Brassica oleracea
BolC3t17825H Brassica oleracea
BolC7t41405H Brassica oleracea
BolC7t46696H Brassica oleracea
BraA01t00080Z Brassica rapa
BraA03t13599Z Brassica rapa
BraA03t15637Z Brassica rapa
C01p00880 Brassica napus
C03p55480 Brassica napus
C07p09640 Brassica napus
C07p62820 Brassica napus
CAN.G220.74 Capsicum annuum
CAN.G566.16 Capsicum annuum
CAN.G842.1 Capsicum annuum
CANSAT01G1806 Cannabis sativa
CANSAT78G1669 Cannabis sativa
CARHR103270 Cardamine hirsuta
CARHR246830 Cardamine hirsuta
Carub.0003s2687 Capsella rubella
Carub.0007s0180 Capsella rubella
Ca_09803_v3 Cicer arietinum L.
Ca_11903_v3 Cicer arietinum L.
Ca_16527_v3 Cicer arietinum L.
Ca_16529_v3 Cicer arietinum L.
Ca_17736_v3 Cicer arietinum L.
Ca_30484_v3 Cicer arietinum L.
CBR_g38909 Chara braunii
CBR_g49715 Chara braunii
CBR_g49969 Chara braunii
Cc03_g06260 Coffea canephora
Cc07_g15260 Coffea canephora
CDE01G0320 Ceratophyllum demersum
CDE02G3445 Ceratophyllum demersum
CDE10G1312 Ceratophyllum demersum
Cfa002666 Carpinus fangiana
Ciclev10005395m.g Citrus clementina
Ciclev10025897m.g Citrus clementina
CiPaw.01G178300 Carya illinoinensis
CiPaw.01G178400 Carya illinoinensis
CiPaw.02G107300 Carya illinoinensis
CiPaw.03G141700 Carya illinoinensis
CiPaw.04G099300 Carya illinoinensis
ClCG05G004020 Citrullus lanatus
ClCG06G007260 Citrullus lanatus
ClCG10G008810 Citrullus lanatus
COL.COLO4_09962 Corchorus olitorius
COL.COLO4_15959 Corchorus olitorius
Cpa.g.c38732 Carica papaya
Cpa.g.sc44.3 Carica papaya
Cre10.g439550 Chlamydomonas reinhardtii
CsaV3_2G012440 Cucumis sativus L.
CsaV3_3G011730 Cucumis sativus L.
CsaV3_4G008920 Cucumis sativus L.
CSS0008784 Camellia sinensis var. sinensis
CSS0037925 Camellia sinensis var. sinensis
DCAR_000354 Daucus carota
DCAR_010085 Daucus carota
DCAR_027347 Daucus carota
Dinv27110 Davidia involucrata
Dinv29805 Davidia involucrata
Duzib147G0507 Durio zibethinus
Duzib151G0789 Durio zibethinus
Duzib212G0278 Durio zibethinus
Duzib212G0868 Durio zibethinus
Duzib264G1191 Durio zibethinus
ECA238G0151 Erigeron canadensis
ECA248G3039 Erigeron canadensis
EL10Ac2g04578 Beta vulgaris
EL10Ac3g04946 Beta vulgaris
EL10Ac6g15101 Beta vulgaris
Eucgr.H02928 Eucalyptus grandis
Eucgr.H02930 Eucalyptus grandis
Eucgr.H04786 Eucalyptus grandis
FAN12G0053 Fragaria x ananassa
FAN13G1920 Fragaria x ananassa
FAN17G0334 Fragaria x ananassa
FAN19G2413 Fragaria x ananassa
FAN22G2429 Fragaria x ananassa
FAN23G1977 Fragaria x ananassa
FAN26G0864 Fragaria x ananassa
FAN28G1556 Fragaria x ananassa
FvH4_1g20920 Fragaria vesca
FvH4_4g04550 Fragaria vesca
FvH4_5g26940 Fragaria vesca
FvH4_5g26970 Fragaria vesca
Glyma.01G027600 Glycine max
Glyma.08G135900 Glycine max
Glyma.10G190400 Glycine max
Glyma.11G240100 Glycine max
Glyma.18G017300 Glycine max
Glyma.20G200300 Glycine max
Gohir.A02G042800 Gossypium hirsutum
Gohir.A02G143300 Gossypium hirsutum
Gohir.A09G059600 Gossypium hirsutum
Gohir.A09G227500 Gossypium hirsutum
Gohir.A12G087800 Gossypium hirsutum
Gohir.D02G048400 Gossypium hirsutum
Gohir.D03G037200 Gossypium hirsutum
Gohir.D09G058900 Gossypium hirsutum
Gohir.D09G228500 Gossypium hirsutum
Gohir.D12G085900 Gossypium hirsutum
Gorai.003G039000 Gossypium raimondii
Gorai.005G053700 Gossypium raimondii
Gorai.006G073200 Gossypium raimondii
Gorai.006G251200 Gossypium raimondii
Gorai.008G096200 Gossypium raimondii
GSVIVG01027912001 Vitis vinifera
HanXRQChr01g0022991 Helianthus annuus
HanXRQChr04g0116171 Helianthus annuus
HanXRQChr14g0445771 Helianthus annuus
Haze_11455 Corylus avellana
Haze_24935 Corylus avellana
Hma1.2p1_0047F.1_g027840 Hydrangea macrophylla
Hund03085 Selenicereus undatus
Hund11937 Selenicereus undatus
Hund13626 Selenicereus undatus
Hund16283 Selenicereus undatus
Lalb_Chr02g0150691 Lupinus albus
Lalb_Chr06g0169511 Lupinus albus
Lalb_Chr12g0203821 Lupinus albus
Lj4A891T52 Lonicera japonica
Lj4C905G5 Lonicera japonica
Lj4g0003424 Lotus japonicus
Lj5g0023029 Lotus japonicus
Lj6A622G54 Lonicera japonica
Lj6g0025700 Lotus japonicus
Lsat_1_v5_gn_1_4140 Lactuca sativa
Lsat_1_v5_gn_1_75620 Lactuca sativa
Lsat_1_v5_gn_1_82200 Lactuca sativa
Lsat_1_v5_gn_2_40700 Lactuca sativa
Lsat_1_v5_gn_3_117720 Lactuca sativa
Lsat_1_v5_gn_7_101900 Lactuca sativa
Lsat_1_v5_gn_8_152961 Lactuca sativa
Manes.03G159300 Manihot esculenta
Manes.12G135100 Manihot esculenta
Manes.15G045500 Manihot esculenta
Mapoly0102s0056 Marchantia polymorpha
Mapoly0104s0023 Marchantia polymorpha
MBI02_g08726_MAGBIO Magnolia biondii
MBI10_g35436_MAGBIO Magnolia biondii
MCO01G491 Micromonas commoda
MD13G1220900 Malus domestica
MD15G1324300 Malus domestica
MD16G1226000 Malus domestica
Medtr1g044690 Medicago truncatula
Medtr1g044700 Medicago truncatula
Medtr1g073340 Medicago truncatula
Medtr3g087230 Medicago truncatula
Medtr8g090235 Medicago truncatula
MELO3C006380.2 Cucumis melo
MELO3C018977.2 Cucumis melo
MELO3C023042.2 Cucumis melo
Migut.B00256 Erythranthe guttata
Migut.H02361 Erythranthe guttata
MSTRG.16795 Avicennia marina
MSTRG.23342 Avicennia marina
Nitab4.5_0000104g0060 Nicotiana tabacum
Nitab4.5_0000194g0220 Nicotiana tabacum
Nitab4.5_0002751g0070 Nicotiana tabacum
Nitab4.5_0003629g0050 Nicotiana tabacum
Nitab4.5_0008835g0050 Nicotiana tabacum
Nitab4.5_0011782g0030 Nicotiana tabacum
Nn1g01446 Nelumbo nucifera
Nn1g02952 Nelumbo nucifera
Nn3g19774 Nelumbo nucifera
Nn5g30129 Nelumbo nucifera
Oeu055257.1 Olea europaea
Os02g0754000 Oryza sativa ssp. japonica
Os06g0221100 Oryza sativa ssp. japonica
Os07g0438700 Oryza sativa ssp. japonica
Peaxi162Scf00153g01715 Petunia axillaris
Peaxi162Scf00169g00218 Petunia axillaris
Peaxi162Scf00212g00717 Petunia axillaris
PGR004G1735 Punica granatum
PGR102G2983 Punica granatum
PGSC0003DMG400001887 Solanum tuberosum
PGSC0003DMG400017147 Solanum tuberosum
PGSC0003DMG400029252 Solanum tuberosum
Phvul.001G252100 Phaseolus vulgaris
Phvul.002G255900 Phaseolus vulgaris
Phvul.007G270400 Phaseolus vulgaris
Phvul.L001844 Phaseolus vulgaris
Potri.005G075800 Populus trichocarpa
Potri.007G092700 Populus trichocarpa
Potri.010G065900 Populus trichocarpa
Pp3c23_20180 Physcomitrium patens
Pp3c24_19410 Physcomitrium patens
Pp3c8_17090 Physcomitrium patens
PRCOL_00000167 Prasinoderma coloniale
PRCOL_00000679 Prasinoderma coloniale
PRCOL_00001609 Prasinoderma coloniale
Prupe.1G047600 Prunus persica
Prupe.6G186700 Prunus persica
Psat5g090000 Pisum sativum
Psat6g109280 Pisum sativum
Psat6g131560 Pisum sativum
Psat7g054920 Pisum sativum
PSO210G4458 Papaver somniferum
PSO447G0066 Papaver somniferum
PSO764G0281 Papaver somniferum
PSO832G3785 Papaver somniferum
QL06p020938 Quercus lobata
QL06p049551 Quercus lobata
RcHm_v2.0_Chr2g0113781 Rosa chinensis
RcHm_v2.0_Chr2g0113791 Rosa chinensis
RcHm_v2.0_Chr2g0113881 Rosa chinensis
RcHm_v2.0_Chr2g0113891 Rosa chinensis
RcHm_v2.0_Chr2g0113971 Rosa chinensis
RcHm_v2.0_Chr2g0113981 Rosa chinensis
RcHm_v2.0_Chr2g0114321 Rosa chinensis
RcHm_v2.0_Chr2g0114361 Rosa chinensis
RcHm_v2.0_Chr2g0114391 Rosa chinensis
RcHm_v2.0_Chr4g0395311 Rosa chinensis
Rhsim04G0172600 Rhododendron simsii
Rhsim10G0163000 Rhododendron simsii
Sabra05G0062300 Salix brachista
Sabra07G0076900 Salix brachista
Sabra08G0131100 Salix brachista
Sabra10G0041300 Salix brachista
SalBow6G2507 Salvia bowleyana
SalBow6G5083 Salvia bowleyana
Sc03g0002090 Simmondsia chinensis
Sc25g0003540 Simmondsia chinensis
Sed0007407 Sechium edule
Sed0016631 Sechium edule
Sed0022569 Sechium edule
SEGI_01846 Sequoiadendron giganteum
SEGI_06063 Sequoiadendron giganteum
SEGI_28340 Sequoiadendron giganteum
SEGI_33614 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31519 Striga asiatica
SGA_v2.0_scaffold58G20558 Striga asiatica
SMO304G0114 Selaginella moellendorffii
SMO356G0755 Selaginella moellendorffii
Solyc04g055180.3 Solanum lycopersicum
Solyc09g090670.3 Solanum lycopersicum
Solyc12g096950.2 Solanum lycopersicum
Sopen04g025040 Solanum pennellii
Sopen09g033610 Solanum pennellii
Sopen12g032760 Solanum pennellii
Sp3g24070 Schrenkiella parvula
Sp7g36020 Schrenkiella parvula
TAR362G0924 Trochodendron aralioides
TAR381G0049 Trochodendron aralioides
TAR625G1521 Trochodendron aralioides
TAR633G2661 Trochodendron aralioides
THA.LOC104807695 Tarenaya hassleriana
THA.LOC104808871 Tarenaya hassleriana
THA.LOC104824875 Tarenaya hassleriana
Thecc.01G101700 Theobroma cacao
Thecc.04G263500 Theobroma cacao
Thhalv10002628m.g Eutrema salsugineum
TPR.G17844 Trifolium pratense
TPR.G23962 Trifolium pratense
TPR.G28844 Trifolium pratense
TWI09G1302 Tripterygium wilfordii
TWI53G1715 Tripterygium wilfordii
TWI73G0653 Tripterygium wilfordii
unitig_37.g12817 Utricularia gibba
unitig_749.g14225 Utricularia gibba
unitig_78.g29621 Utricularia gibba
unitig_78.g29622 Utricularia gibba
vmacro08552 Vaccinium macrocarpon
vmacro12956 Vaccinium macrocarpon
VMungo0720G0043 Vigna mungo
VMungo1383G1142 Vigna mungo
Zm00001eb194150 Zea mays
Zm00001eb306200 Zea mays
Zm00001eb372700 Zea mays

User provided reference genes

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