Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p04640 Brassica napus
A03p45040 Brassica napus
A03p45050 Brassica napus
A08p17460 Brassica napus
Aa31LG8G12370 Aethionema arabicum
Aa31LG8G12690 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1857 Anthoceros agrestis
Actinidia00255 Actinidia chinensis
Actinidia04423 Actinidia chinensis
Actinidia28008 Actinidia chinensis
Actinidia38974 Actinidia chinensis
Ah.02g112660 Amaranthus hybridus
Ah.11g045820 Amaranthus hybridus
Ah.16g108760 Amaranthus hybridus
AL3G45650 Arabidopsis lyrata
AL7G17800 Arabidopsis lyrata
Aqoxy4G02219 Aquilegia oxysepala
Aqoxy6G00522 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0DQR3C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0T2RHF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4M6CWI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J522ZU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PB3HHH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q4IY6W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T4HAMV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VXEK44 Arachis hypogaea
AT2G13810 Arabidopsis thaliana
AT4G33680 Arabidopsis thaliana
ATR0174G051 Amborella trichopoda
ATR0564G500 Amborella trichopoda
ATR0706G280 Amborella trichopoda
Atru.chr13.1286 Acer truncatum
Atru.chr5.2162 Acer truncatum
Atru.chr6.934 Acer truncatum
Atru.chr8.2385 Acer truncatum
AUR62001000 Chenopodium quinoa
AUR62011729 Chenopodium quinoa
AUR62022333 Chenopodium quinoa
AUR62022336 Chenopodium quinoa
AUR62024561 Chenopodium quinoa
AUR62024562 Chenopodium quinoa
AUR62033638 Chenopodium quinoa
AUR62034371 Chenopodium quinoa
AUR62034743 Chenopodium quinoa
AUR62034941 Chenopodium quinoa
BcaB03g12781 Brassica carinata
BcaB08g34544 Brassica carinata
BcaC01g00969 Brassica carinata
BcaC01g03116 Brassica carinata
BolC1t00485H Brassica oleracea
BolC3t17875H Brassica oleracea
BolC3t20939H Brassica oleracea
BraA01t00447Z Brassica rapa
BraA03t13640Z Brassica rapa
BraA08t33702Z Brassica rapa
C01p05030 Brassica napus
C03p55920 Brassica napus
C03p86460 Brassica napus
CAN.G1687.3 Capsicum annuum
CAN.G406.5 Capsicum annuum
CAN.G521.7 Capsicum annuum
CAN.G606.72 Capsicum annuum
CAN.G65.171 Capsicum annuum
CAN.G726.7 Capsicum annuum
CAN.G97.24 Capsicum annuum
CANSAT25G2912 Cannabis sativa
CANSAT25G3343 Cannabis sativa
CARHR104700 Cardamine hirsuta
CARHR241780 Cardamine hirsuta
Carub.0003s2822 Capsella rubella
Carub.0003s2845 Capsella rubella
Carub.0007s0674 Capsella rubella
Ca_00121_v3 Cicer arietinum L.
Ca_18427_v3 Cicer arietinum L.
Ca_29349_v3 Cicer arietinum L.
CBR_g3029 Chara braunii
Cc00_g18590 Coffea canephora
Cc00_g33750 Coffea canephora
Cc02_g21800 Coffea canephora
Cc10_g06220 Coffea canephora
CDE04G0390 Ceratophyllum demersum
CDE05G1241 Ceratophyllum demersum
CDE06G2185 Ceratophyllum demersum
Cfa003374 Carpinus fangiana
Cfa004756 Carpinus fangiana
Cfa005635 Carpinus fangiana
Cfa015936 Carpinus fangiana
Ciclev10001085m.g Citrus clementina
Ciclev10003912m.g Citrus clementina
Ciclev10028382m.g Citrus clementina
CiPaw.05G129600 Carya illinoinensis
CiPaw.05G231700 Carya illinoinensis
CiPaw.06G151800 Carya illinoinensis
ClCG10G009860 Citrullus lanatus
ClCG11G007960 Citrullus lanatus
COL.COLO4_17825 Corchorus olitorius
COL.COLO4_33881 Corchorus olitorius
Cpa.g.sc103.40 Carica papaya
Cpa.g.sc20.71 Carica papaya
Cre06.g278249 Chlamydomonas reinhardtii
Cre17.g734200 Chlamydomonas reinhardtii
CsaV3_2G033650 Cucumis sativus L.
CsaV3_4G014580 Cucumis sativus L.
CSS0047979 Camellia sinensis var. sinensis
CSS0049994 Camellia sinensis var. sinensis
DCAR_001861 Daucus carota
DCAR_001863 Daucus carota
DCAR_021843 Daucus carota
DCAR_029851 Daucus carota
DCAR_029852 Daucus carota
Dinv09505 Davidia involucrata
Dinv13058 Davidia involucrata
Dinv16053 Davidia involucrata
Dinv24213 Davidia involucrata
Duzib093G0402 Durio zibethinus
Duzib132G0094 Durio zibethinus
Duzib132G0221 Durio zibethinus
Duzib248G0746 Durio zibethinus
Duzib248G0917 Durio zibethinus
Duzib248G1361 Durio zibethinus
ECA236G3746 Erigeron canadensis
ECA240G3223 Erigeron canadensis
ECA240G4476 Erigeron canadensis
EL10Ac1g01698 Beta vulgaris
EL10Ac2g03804 Beta vulgaris
Eucgr.G01124 Eucalyptus grandis
FAN04G0478 Fragaria x ananassa
FAN04G0618 Fragaria x ananassa
FAN04G1174 Fragaria x ananassa
FAN08G0631 Fragaria x ananassa
FAN08G1365 Fragaria x ananassa
FAN13G1132 Fragaria x ananassa
FAN13G3274 Fragaria x ananassa
FAN15G0968 Fragaria x ananassa
FAN18G0005 Fragaria x ananassa
FAN18G4578 Fragaria x ananassa
FAN20G1359 Fragaria x ananassa
FAN24G1861 Fragaria x ananassa
FAN27G2556 Fragaria x ananassa
FvH4_2g02700 Fragaria vesca
FvH4_5g30860 Fragaria vesca
FvH4_5g38260 Fragaria vesca
Glyma.07G185700 Glycine max
Glyma.08G063500 Glycine max
Glyma.08G180600 Glycine max
Glyma.14G167600 Glycine max
Glyma.15G051801 Glycine max
Gohir.A03G172000 Gossypium hirsutum
Gohir.A03G213000 Gossypium hirsutum
Gohir.A05G230400 Gossypium hirsutum
Gohir.D02G195301 Gossypium hirsutum
Gohir.D02G234500 Gossypium hirsutum
Gohir.D05G232900 Gossypium hirsutum
Gorai.005G218300 Gossypium raimondii
Gorai.005G262500 Gossypium raimondii
Gorai.009G241000 Gossypium raimondii
GSVIVG01008968001 Vitis vinifera
GSVIVG01029761001 Vitis vinifera
GSVIVG01036981001 Vitis vinifera
GSVIVG01036983001 Vitis vinifera
HanXRQChr05g0136241 Helianthus annuus
HanXRQChr07g0190651 Helianthus annuus
HanXRQChr09g0248441 Helianthus annuus
HanXRQChr11g0323191 Helianthus annuus
HanXRQChr14g0454831 Helianthus annuus
Haze_00555 Corylus avellana
Haze_10349 Corylus avellana
Haze_10353 Corylus avellana
Haze_10629 Corylus avellana
Haze_10630 Corylus avellana
Haze_25577 Corylus avellana
Hma1.2p1_0276F.1_g111390 Hydrangea macrophylla
Hma1.2p1_0915F.1_g236370 Hydrangea macrophylla
Hma1.2p1_0915F.1_g236380 Hydrangea macrophylla
Hma1.2p1_1341F.1_g276900 Hydrangea macrophylla
Hma1.2p1_2001F.1_g310620 Hydrangea macrophylla
Hma1.2p1_2650F.1_g326138 Hydrangea macrophylla
Hma1.2p1_2650F.1_g326140 Hydrangea macrophylla
HPP92_009233 Vanilla planifolia
HPP92_021276 Vanilla planifolia
Hund11632 Selenicereus undatus
Lalb_Chr09g0327071 Lupinus albus
Lalb_Chr16g0383191 Lupinus albus
Lalb_Chr16g0383201 Lupinus albus
Lalb_Chr18g0060611 Lupinus albus
Lj1g0001837 Lotus japonicus
Lj4A711G30 Lonicera japonica
Lj4g0002720 Lotus japonicus
Lj5A223G92 Lonicera japonica
Lj5A242T50 Lonicera japonica
Lj6g0004430 Lotus japonicus
Lj6g0017603 Lotus japonicus
Lj8P460T2 Lonicera japonica
Lsat_1_v5_gn_7_81140 Lactuca sativa
Lsat_1_v5_gn_9_113620 Lactuca sativa
Manes.07G049800 Manihot esculenta
Manes.10G089350 Manihot esculenta
Manes.14G167666 Manihot esculenta
Manes.18G071300 Manihot esculenta
Mapoly0012s0037 Marchantia polymorpha
MBI02_g34267_MAGBIO Magnolia biondii
MBI02_g48055_MAGBIO Magnolia biondii
MBI16_g26385_MAGBIO Magnolia biondii
MCO01G570 Micromonas commoda
MD00G1080500 Malus domestica
MD00G1080600 Malus domestica
MD05G1111000 Malus domestica
MD08G1221500 Malus domestica
MD10G1114500 Malus domestica
MD15G1412200 Malus domestica
MD15G1412400 Malus domestica
Medtr2g008430 Medicago truncatula
Medtr4g092620 Medicago truncatula
MELO3C008136.2 Cucumis melo
MELO3C018037.2 Cucumis melo
Migut.B00498 Erythranthe guttata
Migut.L00725 Erythranthe guttata
Migut.N01001 Erythranthe guttata
Migut.N01007 Erythranthe guttata
Migut.O00613 Erythranthe guttata
MSTRG.20242 Avicennia marina
MSTRG.27786 Avicennia marina
MSTRG.5259 Avicennia marina
Nitab4.5_0000237g0050 Nicotiana tabacum
Nitab4.5_0000302g0060 Nicotiana tabacum
Nitab4.5_0002683g0070 Nicotiana tabacum
Nitab4.5_0005497g0020 Nicotiana tabacum
Nitab4.5_0008969g0020 Nicotiana tabacum
Nn1g05244 Nelumbo nucifera
Nn3g17826 Nelumbo nucifera
Nn5g28979 Nelumbo nucifera
Nn8g40783 Nelumbo nucifera
Oeu040727.1 Olea europaea
Os03g0195100 Oryza sativa ssp. japonica
Os03g0299900 Oryza sativa ssp. japonica
Peaxi162Scf00152g01120 Petunia axillaris
Peaxi162Scf00413g00085 Petunia axillaris
PGR042G2241 Punica granatum
PGR042G3417 Punica granatum
PGSC0003DMG400022929 Solanum tuberosum
PGSC0003DMG400027014 Solanum tuberosum
Phvul.002G217100 Phaseolus vulgaris
Phvul.008G169600 Phaseolus vulgaris
Potri.002G091500 Populus trichocarpa
Potri.005G115800 Populus trichocarpa
Potri.007G013200 Populus trichocarpa
Potri.009G082100 Populus trichocarpa
Pp3c13_22230 Physcomitrium patens
PRCOL_00006291 Prasinoderma coloniale
Prupe.1G509100 Prunus persica
Prupe.1G509500 Prunus persica
Prupe.1G558600 Prunus persica
Prupe.8G156000 Prunus persica
Prupe.8G156100 Prunus persica
Psat1g217960 Pisum sativum
Psat7g104520 Pisum sativum
PSO063G7236 Papaver somniferum
PSO541G2105 Papaver somniferum
PSO675G1772 Papaver somniferum
PSO754G0049 Papaver somniferum
QL11p027759 Quercus lobata
QL12p035640 Quercus lobata
RcHm_v2.0_Chr6g0247121 Rosa chinensis
RcHm_v2.0_Chr7g0226031 Rosa chinensis
RcHm_v2.0_Chr7g0240251 Rosa chinensis
Rhsim07G0102700 Rhododendron simsii
Rhsim11G0135000 Rhododendron simsii
Sabra02G0072300 Salix brachista
Sabra05G0094800 Salix brachista
Sabra07G0010200 Salix brachista
Sabra09G0063700 Salix brachista
SalBow6G0401 Salvia bowleyana
Sc05g0000130 Simmondsia chinensis
Sc26g0002330 Simmondsia chinensis
Sed0015806 Sechium edule
Sed0017864 Sechium edule
Sed0028232 Sechium edule
SEGI_11402 Sequoiadendron giganteum
SEGI_15230 Sequoiadendron giganteum
SEGI_21604 Sequoiadendron giganteum
SEGI_23482 Sequoiadendron giganteum
SGA_v2.0_scaffold32G12966 Striga asiatica
SGA_v2.0_scaffold45G17304 Striga asiatica
SHI11162 Sapria himalayana
SMO164G0037 Selaginella moellendorffii
Solyc06g073280.3 Solanum lycopersicum
Solyc11g044840.2 Solanum lycopersicum
Sopen06g029640 Solanum pennellii
Sopen11g020320 Solanum pennellii
Sp3g27140 Schrenkiella parvula
Sp7g31410 Schrenkiella parvula
TAR381G1623 Trochodendron aralioides
TAR626G1513 Trochodendron aralioides
TAR629G1521 Trochodendron aralioides
TAR629G1610 Trochodendron aralioides
TAR629G2456 Trochodendron aralioides
TAR629G2669 Trochodendron aralioides
THA.LOC104807195 Tarenaya hassleriana
THA.LOC104819500 Tarenaya hassleriana
Thecc.02G034000 Theobroma cacao
Thecc.02G142700 Theobroma cacao
Thecc.08G114000 Theobroma cacao
Thhalv10022684m.g Eutrema salsugineum
Thhalv10022686m.g Eutrema salsugineum
Thhalv10024872m.g Eutrema salsugineum
TPR.G13611 Trifolium pratense
TPR.G16911 Trifolium pratense
TPR.G22132 Trifolium pratense
TPR.G31869 Trifolium pratense
TWI14G0458 Tripterygium wilfordii
TWI23G0221 Tripterygium wilfordii
TWI36G1285 Tripterygium wilfordii
unitig_21.g20710 Utricularia gibba
vmacro01813 Vaccinium macrocarpon
vmacro13420 Vaccinium macrocarpon
vmacro13423 Vaccinium macrocarpon
vmacro19919 Vaccinium macrocarpon
VMungo0251G0468 Vigna mungo
VMungo0540G1275 Vigna mungo
VMungo1309G2862 Vigna mungo
Zm00001eb008180 Zea mays
Zm00001eb013940 Zea mays
Zm00001eb014440 Zea mays
Zm00001eb335840 Zea mays
Zm00001eb396620 Zea mays
Zm00001eb396630 Zea mays
Zm00001eb421210 Zea mays

User provided reference genes

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