Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p05120 Brassica napus
A09p13230 Brassica napus
A09p16030 Brassica napus
Aa31LG1G26610 Aethionema arabicum
Aa31LG2G290 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.168 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4694 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1408 Anthoceros agrestis
Actinidia05179 Actinidia chinensis
Actinidia12665 Actinidia chinensis
Actinidia27439 Actinidia chinensis
Actinidia27440 Actinidia chinensis
Actinidia33491 Actinidia chinensis
Ah.02g117110 Amaranthus hybridus
Ah.05g167390 Amaranthus hybridus
AL2G13040 Arabidopsis lyrata
AL4G44120 Arabidopsis lyrata
AL5G42800 Arabidopsis lyrata
Aqoxy1G03434 Aquilegia oxysepala
Aqoxy3G01912 Aquilegia oxysepala
Aqoxy5G03848 Aquilegia oxysepala
Aqoxy7G00703 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1SK6FC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2DY58C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.51XV3I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.57CUP1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.60JIWJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D1YXCG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D5QJZZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FL2079 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HL4WI4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J2XC32 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KP6TGQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MH0NMS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QXX6B6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V2ETSI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XEJ3YL Arachis hypogaea
AT1G45332 Arabidopsis thaliana
AT1G62750 Arabidopsis thaliana
AT2G45030 Arabidopsis thaliana
ATR0049G074 Amborella trichopoda
ATR0564G237 Amborella trichopoda
Atru.chr5.204 Acer truncatum
Atru.chr9.1395 Acer truncatum
AUR62007465 Chenopodium quinoa
AUR62033018 Chenopodium quinoa
AUR62034061 Chenopodium quinoa
AUR62039923 Chenopodium quinoa
BcaB07g31356 Brassica carinata
BcaC01g05131 Brassica carinata
BcaC02g12268 Brassica carinata
BcaC04g22443 Brassica carinata
BNapus_Darmor_BZH_scaffold_269p00020 Brassica napus
BolC4t22228H Brassica oleracea
BolC9t54478H Brassica oleracea
BolC9t54479H Brassica oleracea
BolC9t54839H Brassica oleracea
BraA05t19486Z Brassica rapa
BraA09t36969Z Brassica rapa
BraA09t36970Z Brassica rapa
BraA09t37239Z Brassica rapa
C04p05970 Brassica napus
C09p15720 Brassica napus
C09p19280 Brassica napus
CAN.G1337.24 Capsicum annuum
CAN.G273.5 Capsicum annuum
CAN.G899.21 Capsicum annuum
CAN.G899.24 Capsicum annuum
CANSAT21G2147 Cannabis sativa
CARHR049090 Cardamine hirsuta
CARHR140280 Cardamine hirsuta
Carub.0002s0223 Capsella rubella
Carub.0004s2762 Capsella rubella
Ca_07392_v3 Cicer arietinum L.
Ca_12297_v3 Cicer arietinum L.
CBR_g17093 Chara braunii
CBR_g30591 Chara braunii
CBR_g40470 Chara braunii
Cc02_g24480 Coffea canephora
Cc08_g13050 Coffea canephora
CDE02G2986 Ceratophyllum demersum
CDE08G0912 Ceratophyllum demersum
CDE08G1227 Ceratophyllum demersum
CDE11G0391 Ceratophyllum demersum
Cfa011126 Carpinus fangiana
Cfa012783 Carpinus fangiana
Cfa024729 Carpinus fangiana
Cfa026916 Carpinus fangiana
Ciclev10018943m.g Citrus clementina
Ciclev10018974m.g Citrus clementina
CiPaw.07G115300 Carya illinoinensis
CiPaw.12G106000 Carya illinoinensis
CiPaw.13G030200 Carya illinoinensis
ClCG01G003760 Citrullus lanatus
ClCG06G002530 Citrullus lanatus
COL.COLO4_00542 Corchorus olitorius
COL.COLO4_12454 Corchorus olitorius
COL.COLO4_37231 Corchorus olitorius
Cpa.g.sc218.3 Carica papaya
Cpa.g.sc29.106 Carica papaya
Cre01.g006150 Chlamydomonas reinhardtii
Cre02.g076250 Chlamydomonas reinhardtii
Cre11.g467553 Chlamydomonas reinhardtii
CsaV3_5G003900 Cucumis sativus L.
CsaV3_6G008600 Cucumis sativus L.
CSS0006474 Camellia sinensis var. sinensis
CSS0010783 Camellia sinensis var. sinensis
CSS0010799 Camellia sinensis var. sinensis
CSS0031871 Camellia sinensis var. sinensis
CSS0040086 Camellia sinensis var. sinensis
DCAR_006806 Daucus carota
DCAR_031877 Daucus carota
Dinv21590 Davidia involucrata
Dinv44101 Davidia involucrata
Duzib068G0535 Durio zibethinus
Duzib133G0844 Durio zibethinus
Duzib138G1530 Durio zibethinus
ECA233G0631 Erigeron canadensis
ECA233G5113 Erigeron canadensis
ECA236G3770 Erigeron canadensis
ECA240G0145 Erigeron canadensis
ECA246G0593 Erigeron canadensis
ECA246G4056 Erigeron canadensis
EL10Ac5g13000 Beta vulgaris
EL10Ac8g19417 Beta vulgaris
Eucgr.D02023 Eucalyptus grandis
Eucgr.D02509 Eucalyptus grandis
FAN01G2709 Fragaria x ananassa
FAN04G1297 Fragaria x ananassa
FAN06G1838 Fragaria x ananassa
FAN06G3291 Fragaria x ananassa
FAN08G0814 Fragaria x ananassa
FAN08G2752 Fragaria x ananassa
FAN10G2068 Fragaria x ananassa
FAN10G3449 Fragaria x ananassa
FAN13G2446 Fragaria x ananassa
FAN18G0783 Fragaria x ananassa
FAN18G1160 Fragaria x ananassa
FvH4_5g00390 Fragaria vesca
FvH4_5g35220 Fragaria vesca
FvH4_7g10500 Fragaria vesca
Glyma.01G075100 Glycine max
Glyma.01G075300 Glycine max
Glyma.01G075400 Glycine max
Glyma.05G055500 Glycine max
Glyma.11G163201 Glycine max
Glyma.17G137600 Glycine max
Gohir.A07G147800 Gossypium hirsutum
Gohir.A11G019900 Gossypium hirsutum
Gohir.A11G077500 Gossypium hirsutum
Gohir.D07G154000 Gossypium hirsutum
Gohir.D11G019600 Gossypium hirsutum
Gohir.D11G081900 Gossypium hirsutum
Gorai.001G176200 Gossypium raimondii
Gorai.007G020900 Gossypium raimondii
Gorai.007G087600 Gossypium raimondii
GSVIVG01004374001 Vitis vinifera
GSVIVG01006035001 Vitis vinifera
GSVIVG01018186001 Vitis vinifera
HanXRQChr03g0087971 Helianthus annuus
HanXRQChr04g0123481 Helianthus annuus
Haze_02737 Corylus avellana
Haze_08592 Corylus avellana
Haze_27063 Corylus avellana
Haze_27555 Corylus avellana
Hma1.2p1_1040F.1_g250930 Hydrangea macrophylla
Hma1.2p1_1098F.1_g256720 Hydrangea macrophylla
Hma1.2p1_1868F.1_g305980 Hydrangea macrophylla
Hma1.2p1_1868F.1_g305990 Hydrangea macrophylla
Hma1.2p1_2244F.1_g317943 Hydrangea macrophylla
Hma1.2p1_2244F.1_g317946 Hydrangea macrophylla
HPP92_020903 Vanilla planifolia
HPP92_020995 Vanilla planifolia
HPP92_020996 Vanilla planifolia
HPP92_021026 Vanilla planifolia
Hund11574 Selenicereus undatus
Hund12552 Selenicereus undatus
Lalb_Chr01g0021531 Lupinus albus
Lalb_Chr03g0039991 Lupinus albus
Lalb_Chr05g0225191 Lupinus albus
Lj1g0021366 Lotus japonicus
Lj2C210G10 Lonicera japonica
Lj4g0014291 Lotus japonicus
Lj8C256T4 Lonicera japonica
Lj9C561G12 Lonicera japonica
Lsat_1_v5_gn_6_90700 Lactuca sativa
Lsat_1_v5_gn_7_11121 Lactuca sativa
Manes.01G075000 Manihot esculenta
Manes.02G035000 Manihot esculenta
Manes.13G145400 Manihot esculenta
Mapoly0029s0132 Marchantia polymorpha
Mapoly0032s0082 Marchantia polymorpha
Mapoly0057s0005 Marchantia polymorpha
MBI07_g35164_MAGBIO Magnolia biondii
MBI12_g24115_MAGBIO Magnolia biondii
MCO11G289 Micromonas commoda
MCO11G478 Micromonas commoda
MCO13G275 Micromonas commoda
MD04G1081800 Malus domestica
MD06G1065100 Malus domestica
MD06G1065200 Malus domestica
MD06G1065300 Malus domestica
MD07G1111000 Malus domestica
Medtr2g020660 Medicago truncatula
Medtr2g028300 Medicago truncatula
Medtr2g028330 Medicago truncatula
Medtr2g028340 Medicago truncatula
Medtr2g028350 Medicago truncatula
Medtr2g028360 Medicago truncatula
Medtr2g028380 Medicago truncatula
Medtr2g028400 Medicago truncatula
Medtr2g028440 Medicago truncatula
Medtr2g029120 Medicago truncatula
Medtr2g029125 Medicago truncatula
Medtr2g029210 Medicago truncatula
Medtr2g066880 Medicago truncatula
Medtr2g066890 Medicago truncatula
Medtr2g067190 Medicago truncatula
Medtr2g067200 Medicago truncatula
Medtr2g101810 Medicago truncatula
Medtr3g014380 Medicago truncatula
Medtr4g051702 Medicago truncatula
Medtr4g101740 Medicago truncatula
Medtr4g101750 Medicago truncatula
Medtr5g078620 Medicago truncatula
Medtr6g004760 Medicago truncatula
Medtr6g023380 Medicago truncatula
Medtr7g044770 Medicago truncatula
Medtr7g407120 Medicago truncatula
Medtr8g104240 Medicago truncatula
Medtr8g104250 Medicago truncatula
Medtr8g105040 Medicago truncatula
Medtr8g105060 Medicago truncatula
Medtr8g105070 Medicago truncatula
Medtr8g105090 Medicago truncatula
MELO3C005565.2 Cucumis melo
MELO3C022276.2 Cucumis melo
Migut.A00863 Erythranthe guttata
Migut.B01569 Erythranthe guttata
MSTRG.12073 Avicennia marina
MSTRG.25541 Avicennia marina
Nitab4.5_0001823g0080 Nicotiana tabacum
Nitab4.5_0003110g0050 Nicotiana tabacum
Nitab4.5_0003983g0050 Nicotiana tabacum
Nitab4.5_0008547g0010 Nicotiana tabacum
Nn6g33913 Nelumbo nucifera
Nn8g41251 Nelumbo nucifera
Oeu004004.1 Olea europaea
Oeu004626.1 Olea europaea
Oeu053278.1 Olea europaea
Oeu061508.1 Olea europaea
Oeu063215.2 Olea europaea
Os03g0565500 Oryza sativa ssp. japonica
Os04g0538100 Oryza sativa ssp. japonica
Os04g0538166 Oryza sativa ssp. japonica
Peaxi162Scf00002g00510 Petunia axillaris
Peaxi162Scf00102g01139 Petunia axillaris
Peaxi162Scf00377g00725 Petunia axillaris
PGR004G2547 Punica granatum
PGR031G0567 Punica granatum
PGSC0003DMG400004738 Solanum tuberosum
PGSC0003DMG400026030 Solanum tuberosum
Phvul.003G217300 Phaseolus vulgaris
Phvul.008G157300 Phaseolus vulgaris
Potri.001G123600 Populus trichocarpa
Potri.003G109900 Populus trichocarpa
Potri.003G113500 Populus trichocarpa
Pp3c12_11700 Physcomitrium patens
Pp3c19_15980 Physcomitrium patens
Pp3c22_17180 Physcomitrium patens
Pp3c22_3310 Physcomitrium patens
Pp3c24_8310 Physcomitrium patens
PRCOL_00004175 Prasinoderma coloniale
PRCOL_00006906 Prasinoderma coloniale
PRCOL_00007012 Prasinoderma coloniale
Prupe.2G134500 Prunus persica
Prupe.5G076600 Prunus persica
Psat0s1289g0240 Pisum sativum
Psat0s2827g0160 Pisum sativum
Psat0s3771g0040 Pisum sativum
Psat0ss9816g0040 Pisum sativum
Psat0ss9816g0120 Pisum sativum
Psat1g060160 Pisum sativum
Psat2g188480 Pisum sativum
Psat3g052960 Pisum sativum
Psat3g157880 Pisum sativum
Psat4g069360 Pisum sativum
Psat5g173480 Pisum sativum
Psat7g180000 Pisum sativum
PSO063G3743 Papaver somniferum
PSO170G6522 Papaver somniferum
PSO782G2754 Papaver somniferum
PSO782G5501 Papaver somniferum
QL04p035341 Quercus lobata
QL04p035353 Quercus lobata
QL06p030935 Quercus lobata
QL08p034874 Quercus lobata
QL11p052913 Quercus lobata
QL12p014161 Quercus lobata
RcHm_v2.0_Chr1g0348291 Rosa chinensis
RcHm_v2.0_Chr6g0273791 Rosa chinensis
RcHm_v2.0_Chr7g0202121 Rosa chinensis
Rhsim02G0217000 Rhododendron simsii
Rhsim02G0217200 Rhododendron simsii
Rhsim07G0103700 Rhododendron simsii
Sabra01G0095200 Salix brachista
Sabra03G0076100 Salix brachista
Sabra03G0078700 Salix brachista
SalBow5G4945 Salvia bowleyana
SalBow6G0720 Salvia bowleyana
Sc01g0009290 Simmondsia chinensis
Sc12g0005740 Simmondsia chinensis
Sc12g0005750 Simmondsia chinensis
Sc12g0005760 Simmondsia chinensis
Sc12g0005770 Simmondsia chinensis
Sc12g0008260 Simmondsia chinensis
Sed0002552 Sechium edule
Sed0010560 Sechium edule
Sed0026821 Sechium edule
SEGI_06742 Sequoiadendron giganteum
SEGI_12897 Sequoiadendron giganteum
SEGI_18917 Sequoiadendron giganteum
SEGI_26077 Sequoiadendron giganteum
SEGI_37261 Sequoiadendron giganteum
SGA_v2.0_scaffold115G32053 Striga asiatica
SGA_v2.0_scaffold146G36169 Striga asiatica
SGA_v2.0_scaffold153G36946 Striga asiatica
SGA_v2.0_scaffold154G37105 Striga asiatica
SGA_v2.0_scaffold67G22648 Striga asiatica
SGA_v2.0_scaffold77G25343 Striga asiatica
SMO351G0593 Selaginella moellendorffii
SMO358G0022 Selaginella moellendorffii
SMO361G0314 Selaginella moellendorffii
Solyc01g090690.4 Solanum lycopersicum
Solyc08g079180.3 Solanum lycopersicum
Solyc12g062900.1 Solanum lycopersicum
Sopen01g036420 Solanum pennellii
Sopen08g027630 Solanum pennellii
Sopen12g026670 Solanum pennellii
Sp2g01890 Schrenkiella parvula
Sp4g27090 Schrenkiella parvula
TAR374G0319 Trochodendron aralioides
TAR375G0518 Trochodendron aralioides
TAR375G0970 Trochodendron aralioides
THA.LOC104823554 Tarenaya hassleriana
THA.LOC104827585 Tarenaya hassleriana
Thecc.01G387100 Theobroma cacao
Thecc.03G258200 Theobroma cacao
Thhalv10001325m.g Eutrema salsugineum
Thhalv10023290m.g Eutrema salsugineum
Thhalv10028174m.g Eutrema salsugineum
TPR.G10478 Trifolium pratense
TPR.G10489 Trifolium pratense
TPR.G10490 Trifolium pratense
TPR.G18025 Trifolium pratense
TPR.G23946 Trifolium pratense
TPR.G26333 Trifolium pratense
TPR.G26360 Trifolium pratense
TPR.G26538 Trifolium pratense
TPR.G299 Trifolium pratense
TPR.G37631 Trifolium pratense
TPR.G39063 Trifolium pratense
TPR.G40420 Trifolium pratense
TWI14G0062 Tripterygium wilfordii
TWI59G0672 Tripterygium wilfordii
TWI81G0267 Tripterygium wilfordii
unitig_0.g1321 Utricularia gibba
unitig_52.g17222 Utricularia gibba
unitig_699.g19761 Utricularia gibba
vmacro13467 Vaccinium macrocarpon
vmacro14056 Vaccinium macrocarpon
vmacro20962 Vaccinium macrocarpon
VMungo0251G1093 Vigna mungo
VMungo0251G2731 Vigna mungo
VMungo0647G0991 Vigna mungo
VMungo1383G1201 Vigna mungo
Zm00001eb064310 Zea mays
Zm00001eb075420 Zea mays
Zm00001eb139590 Zea mays
Zm00001eb427510 Zea mays

User provided reference genes

Program Settings