Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00950 Brassica napus
A08p24140 Brassica napus
Aa31LG1G22040 Aethionema arabicum
Aa31LG6G16560 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2663 Anthoceros agrestis
Actinidia05273 Actinidia chinensis
Actinidia13107 Actinidia chinensis
Actinidia23588 Actinidia chinensis
Actinidia31254 Actinidia chinensis
Actinidia31255 Actinidia chinensis
Ah.01g008480 Amaranthus hybridus
Ah.01g008490 Amaranthus hybridus
Ah.01g022910 Amaranthus hybridus
Ah.08g211940 Amaranthus hybridus
AL6G12160 Arabidopsis lyrata
AL7G10500 Arabidopsis lyrata
Aqoxy212s001 Aquilegia oxysepala
Aqoxy212s002 Aquilegia oxysepala
Aqoxy212s003 Aquilegia oxysepala
Aqoxy4G03186 Aquilegia oxysepala
Aqoxy5G00189 Aquilegia oxysepala
Aqoxy6G02183 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5SR8FF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.81XE7C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B53YPK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NVTB4G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VNV0G0 Arachis hypogaea
AT4G38600 Arabidopsis thaliana
AT5G02880 Arabidopsis thaliana
ATR0304G007 Amborella trichopoda
ATR1159G091 Amborella trichopoda
Atru.chr5.3308 Acer truncatum
Atru.chr5.3309 Acer truncatum
Atru.chr8.2552 Acer truncatum
AUR62010051 Chenopodium quinoa
AUR62013042 Chenopodium quinoa
AUR62039780 Chenopodium quinoa
AUR62040018 Chenopodium quinoa
BcaB01g05869 Brassica carinata
BcaB01g05870 Brassica carinata
BcaB05g21863 Brassica carinata
BcaB06g29619 Brassica carinata
BcaC01g00239 Brassica carinata
BcaC03g13042 Brassica carinata
BcaC03g15870 Brassica carinata
BcaNung01974 Brassica carinata
BcaNung01975 Brassica carinata
BolC2t06068H Brassica oleracea
BolC3t12682H Brassica oleracea
BolC3t19969H Brassica oleracea
BolC7t46778H Brassica oleracea
BolC9t53898H Brassica oleracea
BraA02t04733Z Brassica rapa
BraA02t04735Z Brassica rapa
BraA03t09477Z Brassica rapa
BraA08t34369Z Brassica rapa
C02p00280 Brassica napus
C02p00700 Brassica napus
C03p01230 Brassica napus
C03p77170 Brassica napus
C07p63660 Brassica napus
CAN.G1235.33 Capsicum annuum
CAN.G124.13 Capsicum annuum
CAN.G1245.16 Capsicum annuum
CAN.G186.13 Capsicum annuum
CAN.G22.14 Capsicum annuum
CAN.G283.12 Capsicum annuum
CAN.G340.4 Capsicum annuum
CAN.G37.9 Capsicum annuum
CAN.G588.70 Capsicum annuum
CAN.G608.20 Capsicum annuum
CAN.G61.14 Capsicum annuum
CAN.G62.19 Capsicum annuum
CAN.G628.2 Capsicum annuum
CAN.G80.1 Capsicum annuum
CANSAT25G3273 Cannabis sativa
CANSAT80G1184 Cannabis sativa
CARHR210440 Cardamine hirsuta
CARHR294330 Cardamine hirsuta
Carub.0006s0169 Capsella rubella
Carub.0007s0047 Capsella rubella
Ca_11447_v3 Cicer arietinum L.
Ca_15304_v3 Cicer arietinum L.
Ca_15305_v3 Cicer arietinum L.
Ca_19064_v3 Cicer arietinum L.
CBR_g4741 Chara braunii
Cc02_g16240 Coffea canephora
Cc06_g03520 Coffea canephora
Cc09_g06930 Coffea canephora
CDE02G3980 Ceratophyllum demersum
CDE05G1307 Ceratophyllum demersum
CDE05G2005 Ceratophyllum demersum
CDE09G0899 Ceratophyllum demersum
CDE09G0934 Ceratophyllum demersum
Cfa005234 Carpinus fangiana
Cfa017503 Carpinus fangiana
Cfa025185 Carpinus fangiana
Ciclev10010897m.g Citrus clementina
Ciclev10027670m.g Citrus clementina
CiPaw.05G081300 Carya illinoinensis
CiPaw.06G122700 Carya illinoinensis
CiPaw.09G180200 Carya illinoinensis
CiPaw.09G180300 Carya illinoinensis
ClCG02G011880 Citrullus lanatus
ClCG10G020580 Citrullus lanatus
COL.COLO4_17325 Corchorus olitorius
COL.COLO4_27086 Corchorus olitorius
Cpa.g.sc114.47 Carica papaya
Cpa.g.sc37.145 Carica papaya
Cre07.g312900 Chlamydomonas reinhardtii
CsaV3_2G016050 Cucumis sativus L.
CsaV3_3G035510 Cucumis sativus L.
CSS0004009 Camellia sinensis var. sinensis
CSS0010551 Camellia sinensis var. sinensis
CSS0030249 Camellia sinensis var. sinensis
CSS0031397 Camellia sinensis var. sinensis
CSS0045277 Camellia sinensis var. sinensis
DCAR_003166 Daucus carota
DCAR_017728 Daucus carota
DCAR_018966 Daucus carota
DCAR_022772 Daucus carota
DCAR_022773 Daucus carota
Dinv14100 Davidia involucrata
Dinv37248 Davidia involucrata
Dinv40117 Davidia involucrata
Dinv41946 Davidia involucrata
Duzib093G1340 Durio zibethinus
Duzib132G0795 Durio zibethinus
Duzib248G0095 Durio zibethinus
ECA233G4569 Erigeron canadensis
ECA233G4585 Erigeron canadensis
ECA234G2208 Erigeron canadensis
ECA248G3606 Erigeron canadensis
EL10Ac7g17345 Beta vulgaris
EL10Ac9g21391 Beta vulgaris
Eucgr.A01178 Eucalyptus grandis
Eucgr.I01410 Eucalyptus grandis
FAN02G0677 Fragaria x ananassa
FAN05G5612 Fragaria x ananassa
FAN09G0078 Fragaria x ananassa
FAN14G0414 Fragaria x ananassa
FAN15G1966 Fragaria x ananassa
FAN20G1059 Fragaria x ananassa
FAN24G0828 Fragaria x ananassa
FAN27G1306 Fragaria x ananassa
FvH4_2g01290 Fragaria vesca
FvH4_6g15270 Fragaria vesca
Glyma.04G004000 Glycine max
Glyma.06G003600 Glycine max
Glyma.10G049100 Glycine max
Glyma.11G107500 Glycine max
Glyma.12G032500 Glycine max
Glyma.13G136900 Glycine max
Gohir.A01G002700 Gossypium hirsutum
Gohir.A01G167600 Gossypium hirsutum
Gohir.A04G076800 Gossypium hirsutum
Gohir.A12G037600 Gossypium hirsutum
Gohir.A12G037650 Gossypium hirsutum
Gohir.D01G002400 Gossypium hirsutum
Gohir.D01G158700 Gossypium hirsutum
Gohir.D04G115800 Gossypium hirsutum
Gohir.D12G034800 Gossypium hirsutum
Gorai.002G003200 Gossypium raimondii
Gorai.002G196900 Gossypium raimondii
Gorai.008G035900 Gossypium raimondii
Gorai.009G420400 Gossypium raimondii
GSVIVG01018731001 Vitis vinifera
GSVIVG01024033001 Vitis vinifera
GSVIVG01025537001 Vitis vinifera
HanXRQChr04g0112351 Helianthus annuus
HanXRQChr09g0246691 Helianthus annuus
HanXRQChr10g0300921 Helianthus annuus
HanXRQChr11g0349921 Helianthus annuus
HanXRQChr12g0372571 Helianthus annuus
Haze_02149 Corylus avellana
Haze_11137 Corylus avellana
HPP92_003247 Vanilla planifolia
HPP92_003248 Vanilla planifolia
HPP92_003250 Vanilla planifolia
HPP92_015009 Vanilla planifolia
HPP92_015010 Vanilla planifolia
HPP92_018111 Vanilla planifolia
Hund06431 Selenicereus undatus
Hund20155 Selenicereus undatus
Lalb_Chr01g0001851 Lupinus albus
Lalb_Chr02g0153631 Lupinus albus
Lalb_Chr03g0025151 Lupinus albus
Lalb_Chr19g0139131 Lupinus albus
Lalb_Chr19g0139141 Lupinus albus
Lj1g0027642 Lotus japonicus
Lj3A979T60 Lonicera japonica
Lj3g0001348 Lotus japonicus
Lj3g0017227 Lotus japonicus
Lj3g0022174 Lotus japonicus
Lj5C179T14 Lonicera japonica
Lj5g0017747 Lotus japonicus
Lj9C393T4 Lonicera japonica
Lsat_1_v5_gn_0_38401 Lactuca sativa
Lsat_1_v5_gn_1_53840 Lactuca sativa
Lsat_1_v5_gn_1_94280 Lactuca sativa
Lsat_1_v5_gn_3_126681 Lactuca sativa
Lsat_1_v5_gn_4_174681 Lactuca sativa
Lsat_1_v5_gn_4_71560 Lactuca sativa
Lsat_1_v5_gn_7_97480 Lactuca sativa
Lsat_1_v5_gn_8_124281 Lactuca sativa
Lsat_1_v5_gn_8_66500 Lactuca sativa
Manes.04G074400 Manihot esculenta
Manes.08G003000 Manihot esculenta
Mapoly0061s0046 Marchantia polymorpha
MBI05_g23386_MAGBIO Magnolia biondii
MBI08_g05568_MAGBIO Magnolia biondii
MBI09_g17622_MAGBIO Magnolia biondii
MBI12_g47822_MAGBIO Magnolia biondii
MBI12_g48108_MAGBIO Magnolia biondii
MBI14_g15956_MAGBIO Magnolia biondii
MCO07G416 Micromonas commoda
MCO15G039 Micromonas commoda
MD00G1173700 Malus domestica
MD00G1173800 Malus domestica
MD00G1173900 Malus domestica
MD04G1104600 Malus domestica
MD05G1120900 Malus domestica
MD10G1095300 Malus domestica
MD12G1124500 Malus domestica
Medtr1g066920 Medicago truncatula
Medtr1g066940 Medicago truncatula
Medtr4g073370 Medicago truncatula
Medtr7g061200 Medicago truncatula
Medtr7g100660 Medicago truncatula
Medtr7g102710 Medicago truncatula
MELO3C009310.2 Cucumis melo
MELO3C020814.2 Cucumis melo
Migut.J00412 Erythranthe guttata
Migut.N01316 Erythranthe guttata
MSTRG.27643 Avicennia marina
MSTRG.5450 Avicennia marina
Nitab4.5_0001142g0080 Nicotiana tabacum
Nitab4.5_0001889g0100 Nicotiana tabacum
Nitab4.5_0001891g0010 Nicotiana tabacum
Nitab4.5_0007267g0030 Nicotiana tabacum
Nitab4.5_0009766g0020 Nicotiana tabacum
Nitab4.5_0011722g0010 Nicotiana tabacum
Nn1g05117 Nelumbo nucifera
Nn1g07368 Nelumbo nucifera
Nn2g10647 Nelumbo nucifera
Nn2g12838 Nelumbo nucifera
Nn3g21150 Nelumbo nucifera
Nn3g21152 Nelumbo nucifera
Nn5g30770 Nelumbo nucifera
Nn6g31999 Nelumbo nucifera
Oeu006641.2 Olea europaea
Oeu034968.3 Olea europaea
Oeu035588.1 Olea europaea
Oeu043128.1 Olea europaea
Oeu060083.1 Olea europaea
Os02g0101700 Oryza sativa ssp. japonica
Os05g0122400 Oryza sativa ssp. japonica
Os05g0463900 Oryza sativa ssp. japonica
Os05g0464001 Oryza sativa ssp. japonica
Peaxi162Scf00005g04714 Petunia axillaris
Peaxi162Scf00042g02521 Petunia axillaris
Peaxi162Scf00362g00716 Petunia axillaris
Peaxi162Scf00362g00725 Petunia axillaris
Peaxi162Scf00528g00817 Petunia axillaris
Peaxi162Scf17992g00004 Petunia axillaris
PGR004G0394 Punica granatum
PGR142G4388 Punica granatum
PGSC0003DMG401011946 Solanum tuberosum
PGSC0003DMG402011946 Solanum tuberosum
Phvul.007G163300 Phaseolus vulgaris
Phvul.007G163400 Phaseolus vulgaris
Phvul.009G119700 Phaseolus vulgaris
Phvul.011G035200 Phaseolus vulgaris
Potri.004G174700 Populus trichocarpa
Potri.006G132000 Populus trichocarpa
Potri.009G134300 Populus trichocarpa
Potri.016G085200 Populus trichocarpa
Pp3c5_10300 Physcomitrium patens
Pp3c5_17090 Physcomitrium patens
PRCOL_00006444 Prasinoderma coloniale
Prupe.6G241700 Prunus persica
Prupe.8G164700 Prunus persica
Psat0s2358g0200 Pisum sativum
Psat0s2827g0040 Pisum sativum
Psat0s2827g0080 Pisum sativum
Psat0s2827g0120 Pisum sativum
Psat0s773g0120 Pisum sativum
Psat0ss3938g0040 Pisum sativum
Psat2g006080 Pisum sativum
Psat3g110320 Pisum sativum
Psat5g001400 Pisum sativum
Psat5g035760 Pisum sativum
Psat7g017880 Pisum sativum
Psat7g176160 Pisum sativum
PSO339G3092 Papaver somniferum
PSO339G6320 Papaver somniferum
PSO384G1651 Papaver somniferum
PSO541G1030 Papaver somniferum
PSO675G1883 Papaver somniferum
QL07p045315 Quercus lobata
QL07p045319 Quercus lobata
QL11p050142 Quercus lobata
RcHm_v2.0_Chr3g0458101 Rosa chinensis
RcHm_v2.0_Chr3g0468671 Rosa chinensis
RcHm_v2.0_Chr6g0251951 Rosa chinensis
RcHm_v2.0_Chr6g0251991 Rosa chinensis
RcHm_v2.0_Chr6g0252001 Rosa chinensis
Rhsim04G0151600 Rhododendron simsii
Rhsim05G0060600 Rhododendron simsii
Sabra04G0116500 Salix brachista
Sabra06G0103600 Salix brachista
Sabra09G0104000 Salix brachista
SalBow3G0089 Salvia bowleyana
SalBow3G0809 Salvia bowleyana
SalBow3G3185 Salvia bowleyana
Sc08g0002990 Simmondsia chinensis
Sc14g0002230 Simmondsia chinensis
Sc20g0004120 Simmondsia chinensis
Sc20g0004130 Simmondsia chinensis
Sed0004775 Sechium edule
Sed0008816 Sechium edule
Sed0016115 Sechium edule
SEGI_11351 Sequoiadendron giganteum
SEGI_13493 Sequoiadendron giganteum
SEGI_16712 Sequoiadendron giganteum
SEGI_22635 Sequoiadendron giganteum
SEGI_35031 Sequoiadendron giganteum
SGA_v2.0_scaffold119G32764 Striga asiatica
SGA_v2.0_scaffold126G33893 Striga asiatica
SGA_v2.0_scaffold16G07520 Striga asiatica
SGA_v2.0_scaffold207G41915 Striga asiatica
SGA_v2.0_scaffold3G01500 Striga asiatica
SGA_v2.0_scaffold58G20376 Striga asiatica
SGA_v2.0_scaffold74G24628 Striga asiatica
SGA_v2.0_scaffold80G25844 Striga asiatica
SMO118G0088 Selaginella moellendorffii
Solyc01g111530.3 Solanum lycopersicum
Solyc09g007310.3 Solanum lycopersicum
Solyc10g055450.2 Solanum lycopersicum
Sopen01g053570 Solanum pennellii
Sopen09g002190 Solanum pennellii
Sopen10g025230 Solanum pennellii
Sp6g39710 Schrenkiella parvula
Sp7g37170 Schrenkiella parvula
SpUn0003_0090 Schrenkiella parvula
TAR376G0437 Trochodendron aralioides
TAR376G0624 Trochodendron aralioides
TAR381G1293 Trochodendron aralioides
TAR623G1582 Trochodendron aralioides
TAR625G0357 Trochodendron aralioides
TAR628G0375 Trochodendron aralioides
TAR628G1079 Trochodendron aralioides
TAR633G0466 Trochodendron aralioides
TAR636G1431 Trochodendron aralioides
THA.LOC104807813 Tarenaya hassleriana
THA.LOC104816317 Tarenaya hassleriana
Thecc.02G061100 Theobroma cacao
Thecc.05G053500 Theobroma cacao
Thhalv10012430m.g Eutrema salsugineum
Thhalv10024192m.g Eutrema salsugineum
TPR.G20484 Trifolium pratense
TPR.G30254 Trifolium pratense
TPR.G31110 Trifolium pratense
TPR.G39221 Trifolium pratense
TWI31G1474 Tripterygium wilfordii
TWI53G0206 Tripterygium wilfordii
TWI74G1448 Tripterygium wilfordii
unitig_0.g2351 Utricularia gibba
unitig_26.g9214 Utricularia gibba
unitig_52.g17374 Utricularia gibba
unitig_744.g24671 Utricularia gibba
vmacro08696 Vaccinium macrocarpon
vmacro17354 Vaccinium macrocarpon
VMungo0720G1263 Vigna mungo
VMungo1127G1414 Vigna mungo
VMungo1309G2569 Vigna mungo
Zm00001eb063630 Zea mays
Zm00001eb086710 Zea mays
Zm00001eb210110 Zea mays
Zm00001eb229270 Zea mays
Zm00001eb265130 Zea mays
Zm00001eb265140 Zea mays
Zm00001eb265580 Zea mays
Zm00001eb265590 Zea mays
Zm00001eb351670 Zea mays

User provided reference genes

Program Settings