Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41330 Brassica napus
A02p24740 Brassica napus
A03p31050 Brassica napus
A07p31360 Brassica napus
A09p42010 Brassica napus
A09p66740 Brassica napus
A10p01530 Brassica napus
Aa31LG5G14320 Aethionema arabicum
Aa31LG5G2080 Aethionema arabicum
Aa31LG7G6670 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2651 Anthoceros agrestis
Actinidia03935 Actinidia chinensis
Actinidia24340 Actinidia chinensis
Actinidia29560 Actinidia chinensis
Actinidia32225 Actinidia chinensis
Ah.02g115240 Amaranthus hybridus
Ah.04g156730 Amaranthus hybridus
AL1G12290 Arabidopsis lyrata
AL1G47160 Arabidopsis lyrata
AL3G13590 Arabidopsis lyrata
AL6G50610 Arabidopsis lyrata
Aqoxy1G00537 Aquilegia oxysepala
Aqoxy2G02972 Aquilegia oxysepala
Aqoxy5G00739 Aquilegia oxysepala
Aqoxy5G04180 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03NJDX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9HBE4Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F7DIGK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FE2TXN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HT2ILI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JG5FL4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R8JL4Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UB0XN1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZMEP2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZNF0Y2 Arachis hypogaea
AT3G03773 Arabidopsis thaliana
AT4G02450 Arabidopsis thaliana
ATR0697G278 Amborella trichopoda
ATR0796G175 Amborella trichopoda
Atru.chr13.1962_Atru.chr13.1963 Acer truncatum
Atru.chr2.1474 Acer truncatum
Atru.chr5.1168 Acer truncatum
AUR62008653 Chenopodium quinoa
AUR62030685 Chenopodium quinoa
AUR62033114 Chenopodium quinoa
AUR62034121 Chenopodium quinoa
AUR62041187 Chenopodium quinoa
AUR62041288 Chenopodium quinoa
AUR62042864 Chenopodium quinoa
BcaB01g02040 Brassica carinata
BcaB01g02459 Brassica carinata
BcaB03g15757 Brassica carinata
BcaB05g23635 Brassica carinata
BcaC01g06756 Brassica carinata
BcaC03g16127 Brassica carinata
BcaC05g24585 Brassica carinata
BcaC06g33967 Brassica carinata
BcaC09g47753 Brassica carinata
BcaNung04055 Brassica carinata
BcaNung05003 Brassica carinata
BNapus_Darmor_BZH_scaffold_78p00380 Brassica napus
BolC1t05807H Brassica oleracea
BolC2t11518H Brassica oleracea
BolC3t16073H Brassica oleracea
BolC5t28932H Brassica oleracea
BolC5t30878H Brassica oleracea
BraA01t04424Z Brassica rapa
BraA01t04557Z Brassica rapa
BraA02t09178Z Brassica rapa
BraA03t12282Z Brassica rapa
BraA09t39688Z Brassica rapa
BraA10t42429Z Brassica rapa
C02p39040 Brassica napus
C02p54550 Brassica napus
C03p37840 Brassica napus
C03p75350 Brassica napus
C04p12780 Brassica napus
C05p01500 Brassica napus
C05p21850 Brassica napus
CAN.G128.131 Capsicum annuum
CAN.G128.134 Capsicum annuum
CAN.G181.18 Capsicum annuum
CAN.G26.6 Capsicum annuum
CAN.G339.21 Capsicum annuum
CAN.G564.12 Capsicum annuum
CAN.G696.1 Capsicum annuum
CAN.G740.2 Capsicum annuum
CANSAT25G1204 Cannabis sativa
CANSAT25G1862 Cannabis sativa
CANSAT78G1201 Cannabis sativa
CARHR002220 Cardamine hirsuta
CARHR032210 Cardamine hirsuta
CARHR077840 Cardamine hirsuta
CARHR250720 Cardamine hirsuta
Carub.0001s3116 Capsella rubella
Carub.0003s0294 Capsella rubella
Carub.0006s3468 Capsella rubella
Ca_09152_v3 Cicer arietinum L.
Ca_10347_v3 Cicer arietinum L.
Ca_25686_v3 Cicer arietinum L.
CBR_g9124 Chara braunii
Cc01_g20740 Coffea canephora
Cc05_g02280 Coffea canephora
Cc10_g06340 Coffea canephora
CDE02G3587 Ceratophyllum demersum
CDE05G0756 Ceratophyllum demersum
CDE11G0881 Ceratophyllum demersum
Cfa005934 Carpinus fangiana
Cfa025581 Carpinus fangiana
Ciclev10002611m.g Citrus clementina
Ciclev10022431m.g Citrus clementina
Ciclev10022696m.g Citrus clementina
Ciclev10024175m.g Citrus clementina
CiPaw.08G096700 Carya illinoinensis
CiPaw.15G062100 Carya illinoinensis
CiPaw.16G006700 Carya illinoinensis
ClCG08G007140 Citrullus lanatus
ClCG09G005960 Citrullus lanatus
ClCG10G015780 Citrullus lanatus
COL.COLO4_05240 Corchorus olitorius
COL.COLO4_23363 Corchorus olitorius
COL.COLO4_28618 Corchorus olitorius
Cpa.g.sc26.129 Carica papaya
Cpa.g.sc9.223 Carica papaya
Cre07.g341550 Chlamydomonas reinhardtii
CsaV3_3G040660 Cucumis sativus L.
CsaV3_6G004820 Cucumis sativus L.
CsaV3_7G029160 Cucumis sativus L.
CSS0001863 Camellia sinensis var. sinensis
CSS0006103 Camellia sinensis var. sinensis
CSS0016948 Camellia sinensis var. sinensis
CSS0026687 Camellia sinensis var. sinensis
CSS0040330 Camellia sinensis var. sinensis
CSS0042364 Camellia sinensis var. sinensis
DCAR_012393 Daucus carota
DCAR_018334 Daucus carota
DCAR_019978 Daucus carota
DCAR_020657 Daucus carota
Dinv13097 Davidia involucrata
Dinv19705 Davidia involucrata
Dinv25061 Davidia involucrata
Dinv33043 Davidia involucrata
Dinv41016 Davidia involucrata
Duzib041G0041 Durio zibethinus
Duzib116G0310 Durio zibethinus
Duzib133G0470 Durio zibethinus
Duzib138G1883 Durio zibethinus
Duzib177G1092 Durio zibethinus
ECA232G4536 Erigeron canadensis
ECA247G1086 Erigeron canadensis
ECA247G2022 Erigeron canadensis
ECA248G2792 Erigeron canadensis
EL10Ac4g08818 Beta vulgaris
EL10Ac5g11741 Beta vulgaris
EL10Ac7g17449 Beta vulgaris
Eucgr.K01519 Eucalyptus grandis
FAN15G1601 Fragaria x ananassa
FAN15G2691 Fragaria x ananassa
FAN15G3676 Fragaria x ananassa
FAN19G2948 Fragaria x ananassa
FAN20G1600 Fragaria x ananassa
FAN23G0391 Fragaria x ananassa
FAN24G1408 Fragaria x ananassa
FAN24G2982 Fragaria x ananassa
FAN26G3017 Fragaria x ananassa
FAN27G1078 Fragaria x ananassa
FAN27G3526 Fragaria x ananassa
FvH4_1g28480 Fragaria vesca
FvH4_2g12740 Fragaria vesca
FvH4_2g25540 Fragaria vesca
Glyma.02G077100 Glycine max
Glyma.03G213802 Glycine max
Glyma.05G089900 Glycine max
Glyma.16G159900 Glycine max
Glyma.17G187500 Glycine max
Glyma.19G210600 Glycine max
Gohir.A05G247300 Gossypium hirsutum
Gohir.A08G042500 Gossypium hirsutum
Gohir.A12G131100 Gossypium hirsutum
Gohir.A13G097400 Gossypium hirsutum
Gohir.D05G248800 Gossypium hirsutum
Gohir.D08G052300 Gossypium hirsutum
Gohir.D12G135000 Gossypium hirsutum
Gohir.D13G101400 Gossypium hirsutum
Gorai.004G052400 Gossypium raimondii
Gorai.008G146000 Gossypium raimondii
Gorai.009G259900 Gossypium raimondii
Gorai.013G113500 Gossypium raimondii
GSVIVG01013674001 Vitis vinifera
GSVIVG01027380001 Vitis vinifera
GSVIVG01027988001 Vitis vinifera
HanXRQChr01g0026441 Helianthus annuus
HanXRQChr04g0115631 Helianthus annuus
HanXRQChr10g0284541 Helianthus annuus
HanXRQChr11g0320521 Helianthus annuus
HanXRQChr15g0465921 Helianthus annuus
Haze_04911 Corylus avellana
Haze_17843 Corylus avellana
Haze_17844 Corylus avellana
Haze_20446 Corylus avellana
Hma1.2p1_0209F.1_g088480 Hydrangea macrophylla
HPP92_011574 Vanilla planifolia
HPP92_018639 Vanilla planifolia
HPP92_027265 Vanilla planifolia
Hund05417 Selenicereus undatus
Hund06918 Selenicereus undatus
Lalb_Chr04g0259831 Lupinus albus
Lalb_Chr14g0364711 Lupinus albus
Lalb_Chr15g0078561 Lupinus albus
Lalb_Chr18g0047061 Lupinus albus
Lalb_Chr19g0129941 Lupinus albus
Lj1A1066G54 Lonicera japonica
Lj1g0016419 Lotus japonicus
Lj2A1192G46 Lonicera japonica
Lj2g0021193 Lotus japonicus
Lj5g0003181 Lotus japonicus
Lj7A387T78 Lonicera japonica
Lsat_1_v5_gn_1_5380 Lactuca sativa
Lsat_1_v5_gn_1_56061 Lactuca sativa
Lsat_1_v5_gn_7_85560 Lactuca sativa
Lsat_1_v5_gn_9_42641 Lactuca sativa
Lsat_1_v5_gn_9_42661 Lactuca sativa
Lsat_1_v5_gn_9_880 Lactuca sativa
Manes.01G217800 Manihot esculenta
Manes.05G063300 Manihot esculenta
Manes.09G137800 Manihot esculenta
Manes.11G010400 Manihot esculenta
Mapoly0006s0141 Marchantia polymorpha
MBI05_g00398_MAGBIO Magnolia biondii
MBI05_g08791_MAGBIO Magnolia biondii
MBI07_g43660_MAGBIO Magnolia biondii
MBI11_g02051_MAGBIO Magnolia biondii
MBI13_g30265_MAGBIO Magnolia biondii
MBI18_g08109_MAGBIO Magnolia biondii
MBI18_g33627_MAGBIO Magnolia biondii
MCO12G451 Micromonas commoda
MD03G1286200 Malus domestica
MD05G1037300 Malus domestica
MD10G1041200 Malus domestica
MD11G1306100 Malus domestica
MD12G1008700 Malus domestica
Medtr1g088700 Medicago truncatula
Medtr6g027770 Medicago truncatula
Medtr6g034550 Medicago truncatula
Medtr7g108860 Medicago truncatula
Medtr8g058597 Medicago truncatula
MELO3C009797.2 Cucumis melo
MELO3C016012.2 Cucumis melo
MELO3C019955.2 Cucumis melo
Migut.D00205 Erythranthe guttata
Migut.L01869 Erythranthe guttata
Migut.N01501 Erythranthe guttata
Migut.N02936 Erythranthe guttata
MSTRG.10430 Avicennia marina
MSTRG.12605 Avicennia marina
MSTRG.17410 Avicennia marina
MSTRG.22120 Avicennia marina
Nitab4.5_0000433g0070 Nicotiana tabacum
Nitab4.5_0000613g0130 Nicotiana tabacum
Nitab4.5_0000811g0020 Nicotiana tabacum
Nitab4.5_0001000g0100 Nicotiana tabacum
Nitab4.5_0002469g0050 Nicotiana tabacum
Nitab4.5_0002470g0010 Nicotiana tabacum
Nitab4.5_0005515g0040 Nicotiana tabacum
Nitab4.5_0005805g0070 Nicotiana tabacum
Nn1g05168 Nelumbo nucifera
Nn3g18631 Nelumbo nucifera
Nn3g21457 Nelumbo nucifera
Nn4g25819 Nelumbo nucifera
Nn7g37148 Nelumbo nucifera
Oeu040025.1 Olea europaea
Oeu063106.1 Olea europaea
Os03g0381300 Oryza sativa ssp. japonica
Os03g0655300 Oryza sativa ssp. japonica
Os08g0359500 Oryza sativa ssp. japonica
Peaxi162Scf00034g00086 Petunia axillaris
Peaxi162Scf00160g01642 Petunia axillaris
Peaxi162Scf00226g00320 Petunia axillaris
Peaxi162Scf00575g00616 Petunia axillaris
PGR044G0226 Punica granatum
PGR044G1315 Punica granatum
PGR142G3288 Punica granatum
PGSC0003DMG400011398 Solanum tuberosum
PGSC0003DMG400016954 Solanum tuberosum
PGSC0003DMG400028210 Solanum tuberosum
PGSC0003DMG400031137 Solanum tuberosum
Phvul.001G206400 Phaseolus vulgaris
Phvul.004G073200 Phaseolus vulgaris
Phvul.004G088000 Phaseolus vulgaris
Potri.002G061500 Populus trichocarpa
Potri.005G199700 Populus trichocarpa
Potri.013G062600 Populus trichocarpa
Potri.019G038550 Populus trichocarpa
Pp3c13_3880 Physcomitrium patens
Pp3c3_6160 Physcomitrium patens
Pp3c3_6200 Physcomitrium patens
Pp3c4_24960 Physcomitrium patens
Prupe.7G010500 Prunus persica
Prupe.8G045200 Prunus persica
Prupe.8G259700 Prunus persica
Psat0s2687g0200 Pisum sativum
Psat1g087080 Pisum sativum
Psat1g090320 Pisum sativum
Psat3g022000 Pisum sativum
Psat6g165960 Pisum sativum
PSO170G5377 Papaver somniferum
PSO210G5159 Papaver somniferum
PSO339G2024 Papaver somniferum
PSO339G2955 Papaver somniferum
PSO384G3430 Papaver somniferum
PSO384G3710 Papaver somniferum
QL02p036308 Quercus lobata
QL02p036730 Quercus lobata
QL07p017689 Quercus lobata
QL12p026649 Quercus lobata
QL12p027286 Quercus lobata
RcHm_v2.0_Chr3g0496351 Rosa chinensis
RcHm_v2.0_Chr5g0005881 Rosa chinensis
RcHm_v2.0_Chr6g0253271 Rosa chinensis
RcHm_v2.0_Chr6g0253321 Rosa chinensis
RcHm_v2.0_Chr6g0253371 Rosa chinensis
RcHm_v2.0_Chr6g0273521 Rosa chinensis
RcHm_v2.0_Chr6g0293761 Rosa chinensis
RcHm_v2.0_Chr6g0293771 Rosa chinensis
Rhsim03G0052200 Rhododendron simsii
Rhsim11G0088900 Rhododendron simsii
Sabra02G0049800 Salix brachista
Sabra05G0151900 Salix brachista
Sabra13G0055800 Salix brachista
Sabra15G0066800 Salix brachista
Sabra19G0049700 Salix brachista
SalBow2G2742 Salvia bowleyana
Sc05g0004000 Simmondsia chinensis
Sc09g0005020 Simmondsia chinensis
Sc24g0003840 Simmondsia chinensis
Sed0003614 Sechium edule
Sed0009077 Sechium edule
Sed0022002 Sechium edule
SEGI_32768 Sequoiadendron giganteum
SGA_v2.0_scaffold172G39081 Striga asiatica
SGA_v2.0_scaffold36G14344 Striga asiatica
SGA_v2.0_scaffold371G50146 Striga asiatica
SGA_v2.0_scaffold41G15802 Striga asiatica
SHI11326 Sapria himalayana
SMO340G0008 Selaginella moellendorffii
SMO356G0039 Selaginella moellendorffii
Solyc04g072160.3 Solanum lycopersicum
Solyc09g075010.3 Solanum lycopersicum
Solyc10g081360.2 Solanum lycopersicum
Solyc12g056780.2 Solanum lycopersicum
Sopen04g028330 Solanum pennellii
Sopen09g029830 Solanum pennellii
Sopen10g031860 Solanum pennellii
Sopen12g029460 Solanum pennellii
Sp1g01870 Schrenkiella parvula
Sp1g20230 Schrenkiella parvula
Sp3g02750 Schrenkiella parvula
Sp6g02360 Schrenkiella parvula
TAR255G0001 Trochodendron aralioides
TAR362G0807 Trochodendron aralioides
TAR381G0647 Trochodendron aralioides
TAR455G0004 Trochodendron aralioides
TAR623G0726 Trochodendron aralioides
TAR623G1119 Trochodendron aralioides
TAR625G1435 Trochodendron aralioides
TAR633G1365 Trochodendron aralioides
THA.LOC104801273 Tarenaya hassleriana
THA.LOC104802878 Tarenaya hassleriana
THA.LOC104825973 Tarenaya hassleriana
Thecc.01G298500 Theobroma cacao
Thecc.05G244200 Theobroma cacao
Thecc.08G196400 Theobroma cacao
Thhalv10000448m.g Eutrema salsugineum
Thhalv10008755m.g Eutrema salsugineum
Thhalv10021254m.g Eutrema salsugineum
Thhalv10028946m.g Eutrema salsugineum
TPR.G16182 Trifolium pratense
TPR.G22117 Trifolium pratense
TPR.G29880 Trifolium pratense
TPR.G34001 Trifolium pratense
TPR.G9624 Trifolium pratense
TWI14G0156 Tripterygium wilfordii
TWI23G0317 Tripterygium wilfordii
TWI32G1083 Tripterygium wilfordii
TWI59G0031 Tripterygium wilfordii
TWI60G0189 Tripterygium wilfordii
TWI60G1289 Tripterygium wilfordii
unitig_578.g16220 Utricularia gibba
unitig_61.g26311 Utricularia gibba
unitig_899.g15192 Utricularia gibba
vmacro01507 Vaccinium macrocarpon
vmacro02461 Vaccinium macrocarpon
vmacro07560 Vaccinium macrocarpon
VMungo0464G0549 Vigna mungo
VMungo0464G1008 Vigna mungo
VMungo1383G2702 Vigna mungo
Zm00001eb042830 Zea mays
Zm00001eb052800 Zea mays
Zm00001eb170610 Zea mays
Zm00001eb392300 Zea mays

User provided reference genes

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