Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p25010 Brassica napus
A03p09650 Brassica napus
A07p19670 Brassica napus
A10p22910 Brassica napus
Aa31LG11G13470 Aethionema arabicum
Aa31LG1G25430 Aethionema arabicum
Aa31LG7G3110 Aethionema arabicum
Aa31LG8G16280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.384 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2181 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2523 Anthoceros agrestis
Actinidia00897 Actinidia chinensis
Actinidia18938 Actinidia chinensis
Ah.04g161500 Amaranthus hybridus
Ah.10g029210 Amaranthus hybridus
Ah.10g029220 Amaranthus hybridus
Ah.13g073480 Amaranthus hybridus
AL1G30870 Arabidopsis lyrata
AL6G27020 Arabidopsis lyrata
AL6G31350 Arabidopsis lyrata
AL7G52510 Arabidopsis lyrata
Aqoxy3G00246 Aquilegia oxysepala
Aqoxy3G00346 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1NG2E9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4Q6FKB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6Q2VPL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BKN64C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C6GK65 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1RNW4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KF5FYE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M2RWMN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N3P4JH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NUMX36 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RKP3SU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S4WEWC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T2QKVL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YN4U7K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YS4MRY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YT5R9N Arachis hypogaea
AT1G18440 Arabidopsis thaliana
AT5G16140 Arabidopsis thaliana
AT5G19830 Arabidopsis thaliana
AT5G38290 Arabidopsis thaliana
ATR0737G079 Amborella trichopoda
ATR0752G181 Amborella trichopoda
ATR0807G087 Amborella trichopoda
ATR1125G002 Amborella trichopoda
ATR1125G101 Amborella trichopoda
Atru.chr1.1661 Acer truncatum
Atru.chr3.2072 Acer truncatum
Atru.chr3.2264 Acer truncatum
Atru.chr9.789 Acer truncatum
AUR62009012 Chenopodium quinoa
AUR62012051 Chenopodium quinoa
AUR62019170 Chenopodium quinoa
AUR62023289 Chenopodium quinoa
AUR62024317 Chenopodium quinoa
AUR62040911 Chenopodium quinoa
AUR62043982 Chenopodium quinoa
BcaB01g04841 Brassica carinata
BcaB02g08013 Brassica carinata
BcaB03g12978 Brassica carinata
BcaB05g22965 Brassica carinata
BcaB07g31852 Brassica carinata
BcaC04g18892 Brassica carinata
BcaC04g24227 Brassica carinata
BcaC05g25736 Brassica carinata
BcaC08g44376 Brassica carinata
BcaC09g49921 Brassica carinata
BcaNung05444 Brassica carinata
BcaNung07012 Brassica carinata
BNapus_Darmor_BZH_scaffold_129p00190 Brassica napus
BolC1t03063H Brassica oleracea
BolC3t13592H Brassica oleracea
BolC5t30371H Brassica oleracea
BolC6t37016H Brassica oleracea
BolC9t58928H Brassica oleracea
BraA01t02412Z Brassica rapa
BraA01t04608Z Brassica rapa
BraA06t24574Z Brassica rapa
BraA07t29667Z Brassica rapa
BraA10t44358Z Brassica rapa
C01p31240 Brassica napus
C06p18100 Brassica napus
C08p18560 Brassica napus
C09p60860 Brassica napus
CAN.G134.138 Capsicum annuum
CAN.G30.12 Capsicum annuum
CAN.G370.19 Capsicum annuum
CAN.G625.31 Capsicum annuum
CAN.G625.53 Capsicum annuum
CANSAT11G0654 Cannabis sativa
CANSAT25G0332 Cannabis sativa
CANSAT78G0964 Cannabis sativa
CARHR019050 Cardamine hirsuta
CARHR193050 Cardamine hirsuta
CARHR193060 Cardamine hirsuta
CARHR197160 Cardamine hirsuta
CARHR214300 Cardamine hirsuta
Carub.0001s1807 Capsella rubella
Carub.0005s1273 Capsella rubella
Carub.0006s1433 Capsella rubella
Carub.0006s1817 Capsella rubella
Ca_08080_v3 Cicer arietinum L.
Ca_17941_v3 Cicer arietinum L.
CBR_g30124 Chara braunii
CBR_g4733 Chara braunii
Cc00_g18730 Coffea canephora
Cc01_g00790 Coffea canephora
Cc01_g00800 Coffea canephora
Cc04_g07310 Coffea canephora
Cc07_g08720 Coffea canephora
CDE08G1349 Ceratophyllum demersum
CDE08G1484 Ceratophyllum demersum
CDE10G0524 Ceratophyllum demersum
Cfa007914 Carpinus fangiana
Cfa019798 Carpinus fangiana
Ciclev10012586m.g Citrus clementina
Ciclev10016635m.g Citrus clementina
Ciclev10021677m.g Citrus clementina
CiPaw.04G043100 Carya illinoinensis
CiPaw.13G176100 Carya illinoinensis
CiPaw.15G128400 Carya illinoinensis
ClCG03G014460 Citrullus lanatus
ClCG04G011220 Citrullus lanatus
ClCG05G012320 Citrullus lanatus
COL.COLO4_09349 Corchorus olitorius
COL.COLO4_16256 Corchorus olitorius
COL.COLO4_37496 Corchorus olitorius
Cpa.g.sc13.21 Carica papaya
Cpa.g.sc170.56 Carica papaya
Cpa.g.sc8.104 Carica papaya
Cre02.g076600 Chlamydomonas reinhardtii
CsaV3_1G006530 Cucumis sativus L.
CsaV3_1G041710 Cucumis sativus L.
CsaV3_1G041830 Cucumis sativus L.
CsaV3_3G020220 Cucumis sativus L.
CSS0003458 Camellia sinensis var. sinensis
CSS0005960 Camellia sinensis var. sinensis
CSS0025645 Camellia sinensis var. sinensis
CSS0032740 Camellia sinensis var. sinensis
CSS0043723 Camellia sinensis var. sinensis
CSS0045187 Camellia sinensis var. sinensis
DCAR_001636 Daucus carota
DCAR_011348 Daucus carota
DCAR_015906 Daucus carota
DCAR_023192 Daucus carota
Dinv07360 Davidia involucrata
Dinv09634 Davidia involucrata
Dinv13458 Davidia involucrata
Dinv13460 Davidia involucrata
Dinv33956 Davidia involucrata
Duzib084G0037 Durio zibethinus
Duzib084G0311 Durio zibethinus
Duzib128G1326 Durio zibethinus
Duzib138G1516 Durio zibethinus
Duzib205G1245 Durio zibethinus
ECA232G2421 Erigeron canadensis
ECA233G4287 Erigeron canadensis
EL10Ac2g04554 Beta vulgaris
EL10Ac4g10380 Beta vulgaris
EL10Ac5g11424 Beta vulgaris
Eucgr.A00681 Eucalyptus grandis
Eucgr.A00683 Eucalyptus grandis
Eucgr.B00706 Eucalyptus grandis
Eucgr.C01330 Eucalyptus grandis
Eucgr.C01332 Eucalyptus grandis
Eucgr.C01519 Eucalyptus grandis
Eucgr.C01521 Eucalyptus grandis
Eucgr.F02504 Eucalyptus grandis
Eucgr.J01507 Eucalyptus grandis
FAN04G1805 Fragaria x ananassa
FAN08G3688 Fragaria x ananassa
FAN11G3518 Fragaria x ananassa
FAN13G0506 Fragaria x ananassa
FAN13G2741 Fragaria x ananassa
FAN16G2669 Fragaria x ananassa
FAN18G3334 Fragaria x ananassa
FAN18G3854 Fragaria x ananassa
FAN18G4371 Fragaria x ananassa
FAN20G3198 Fragaria x ananassa
FAN25G1842 Fragaria x ananassa
FvH4_3g45460 Fragaria vesca
FvH4_5g12500 Fragaria vesca
FvH4_5g29670 Fragaria vesca
FvH4_6g18020 Fragaria vesca
Glyma.05G109432 Glycine max
Glyma.05G156800 Glycine max
Glyma.05G233000 Glycine max
Glyma.08G040400 Glycine max
Glyma.08G114800 Glycine max
Glyma.08G366800 Glycine max
Glyma.09G172400 Glycine max
Glyma.18G295600 Glycine max
Gohir.A07G174100 Gossypium hirsutum
Gohir.A08G141901 Gossypium hirsutum
Gohir.A09G178000 Gossypium hirsutum
Gohir.A10G052700 Gossypium hirsutum
Gohir.A11G236280 Gossypium hirsutum
Gohir.A12G265900 Gossypium hirsutum
Gohir.D02G101150 Gossypium hirsutum
Gohir.D03G118550 Gossypium hirsutum
Gohir.D05G326050 Gossypium hirsutum
Gohir.D07G181300 Gossypium hirsutum
Gohir.D09G173600 Gossypium hirsutum
Gohir.D10G054500 Gossypium hirsutum
Gohir.D12G266100 Gossypium hirsutum
Gorai.001G202300 Gossypium raimondii
Gorai.006G195500 Gossypium raimondii
Gorai.008G285800 Gossypium raimondii
Gorai.009G350600 Gossypium raimondii
Gorai.011G057900 Gossypium raimondii
GSVIVG01008257001 Vitis vinifera
GSVIVG01013556001 Vitis vinifera
GSVIVG01025453001 Vitis vinifera
GSVIVG01031009001 Vitis vinifera
HanXRQChr02g0057071 Helianthus annuus
HanXRQChr05g0146441 Helianthus annuus
HanXRQChr11g0330671 Helianthus annuus
HanXRQChr16g0498451 Helianthus annuus
Haze_08575 Corylus avellana
Haze_14168 Corylus avellana
Haze_18625 Corylus avellana
Hma1.2p1_0039F.1_g024650 Hydrangea macrophylla
Hma1.2p1_2149F.1_g315170 Hydrangea macrophylla
HPP92_006170 Vanilla planifolia
HPP92_006189 Vanilla planifolia
HPP92_006261 Vanilla planifolia
HPP92_019932 Vanilla planifolia
HPP92_024367 Vanilla planifolia
Hund02411 Selenicereus undatus
Hund10218 Selenicereus undatus
Hund13709 Selenicereus undatus
Hund16161 Selenicereus undatus
Hund22307 Selenicereus undatus
Lalb_Chr04g0257521 Lupinus albus
Lalb_Chr05g0222591 Lupinus albus
Lalb_Chr05g0222601 Lupinus albus
Lalb_Chr07g0186571 Lupinus albus
Lalb_Chr12g0205241 Lupinus albus
Lalb_Chr16g0387931 Lupinus albus
Lj1g0022327 Lotus japonicus
Lj1g0023030 Lotus japonicus
Lj2A730G36 Lonicera japonica
Lj4C190T6 Lonicera japonica
Lj4g0002660 Lotus japonicus
Lj4g0011078 Lotus japonicus
Lj5A146G50 Lonicera japonica
Lj9A428T24 Lonicera japonica
Lsat_1_v5_gn_4_154560 Lactuca sativa
Lsat_1_v5_gn_6_53681 Lactuca sativa
Lsat_1_v5_gn_9_46301 Lactuca sativa
Manes.01G111400 Manihot esculenta
Manes.02G069700 Manihot esculenta
Manes.03G098600 Manihot esculenta
Manes.05G138700 Manihot esculenta
Mapoly0002s0168 Marchantia polymorpha
MBI01_g31846_MAGBIO Magnolia biondii
MBI09_g15240_MAGBIO Magnolia biondii
MBI09_g36996_MAGBIO Magnolia biondii
MCO13G410 Micromonas commoda
MD03G1004800 Malus domestica
MD06G1212500 Malus domestica
MD09G1253800 Malus domestica
MD11G1006000 Malus domestica
MD11G1006400 Malus domestica
MD11G1007000 Malus domestica
MD11G1007300 Malus domestica
MD11G1007400 Malus domestica
MD14G1223800 Malus domestica
MD17G1245600 Malus domestica
Medtr7g082240 Medicago truncatula
Medtr8g085910 Medicago truncatula
Medtr8g095500 Medicago truncatula
Medtr8g103890 Medicago truncatula
MELO3C002080.2 Cucumis melo
MELO3C015585.2 Cucumis melo
MELO3C015598.2 Cucumis melo
MELO3C023748.2 Cucumis melo
Migut.D02552 Erythranthe guttata
Migut.I00375 Erythranthe guttata
Migut.L00331 Erythranthe guttata
MSTRG.11324 Avicennia marina
MSTRG.15302 Avicennia marina
MSTRG.20942 Avicennia marina
Nitab4.5_0000117g0070 Nicotiana tabacum
Nitab4.5_0000208g0210 Nicotiana tabacum
Nitab4.5_0000827g0070 Nicotiana tabacum
Nitab4.5_0000912g0080 Nicotiana tabacum
Nitab4.5_0004416g0070 Nicotiana tabacum
Nitab4.5_0007343g0020 Nicotiana tabacum
Nitab4.5_0012268g0020 Nicotiana tabacum
Nn3g17774 Nelumbo nucifera
Nn3g17900 Nelumbo nucifera
Nn4g23770 Nelumbo nucifera
Nn5g27475 Nelumbo nucifera
Oeu016628.1 Olea europaea
Oeu024317.2 Olea europaea
Oeu033913.1 Olea europaea
Oeu050379.2 Olea europaea
Os01g0132800 Oryza sativa ssp. japonica
Os01g0693900 Oryza sativa ssp. japonica
Os03g0347800 Oryza sativa ssp. japonica
Os05g0549600 Oryza sativa ssp. japonica
Os05g0596700 Oryza sativa ssp. japonica
Peaxi162Scf00139g00032 Petunia axillaris
Peaxi162Scf00207g00639 Petunia axillaris
Peaxi162Scf00394g00715 Petunia axillaris
Peaxi162Scf00804g00017 Petunia axillaris
Peaxi162Scf33681g00001 Petunia axillaris
PGR004G2737 Punica granatum
PGR042G2311 Punica granatum
PGR083G1910 Punica granatum
PGR119G0802 Punica granatum
PGSC0003DMG400021767 Solanum tuberosum
PGSC0003DMG400024986 Solanum tuberosum
PGSC0003DMG401026390 Solanum tuberosum
Phvul.002G237100 Phaseolus vulgaris
Phvul.002G315200 Phaseolus vulgaris
Phvul.008G007300 Phaseolus vulgaris
Potri.001G005000 Populus trichocarpa
Potri.004G098100 Populus trichocarpa
Potri.012G061100 Populus trichocarpa
Pp3c13_17350 Physcomitrium patens
Pp3c4_11200 Physcomitrium patens
PRCOL_00000538 Prasinoderma coloniale
Prupe.3G143700 Prunus persica
Prupe.5G218900 Prunus persica
Prupe.6G004600 Prunus persica
Psat3g098200 Pisum sativum
Psat7g012280 Pisum sativum
Psat7g072560 Pisum sativum
PSO017G3043 Papaver somniferum
PSO017G3148 Papaver somniferum
PSO478G4063 Papaver somniferum
PSO478G4387 Papaver somniferum
QL01p008746 Quercus lobata
QL02p051027 Quercus lobata
QL10p023806 Quercus lobata
QL12p016545 Quercus lobata
RcHm_v2.0_Chr2g0119421 Rosa chinensis
RcHm_v2.0_Chr3g0480441 Rosa chinensis
RcHm_v2.0_Chr5g0050971 Rosa chinensis
RcHm_v2.0_Chr5g0083251 Rosa chinensis
RcHm_v2.0_Chr7g0184851 Rosa chinensis
RcHm_v2.0_Chr7g0222961 Rosa chinensis
Rhsim08G0082700 Rhododendron simsii
Rhsim10G0068700 Rhododendron simsii
Rhsim13G0232000 Rhododendron simsii
Sabra01G0003500 Salix brachista
Sabra04G0081400 Salix brachista
Sabra12G0044400 Salix brachista
SalBow2G2747 Salvia bowleyana
SalBow5G3640 Salvia bowleyana
SalBow7G3806 Salvia bowleyana
Sc04g0003630 Simmondsia chinensis
Sc11g0008380 Simmondsia chinensis
Sc16g0012200 Simmondsia chinensis
Sed0001747 Sechium edule
Sed0004651 Sechium edule
Sed0011098 Sechium edule
Sed0021504 Sechium edule
Sed0022489 Sechium edule
SEGI_04400 Sequoiadendron giganteum
SEGI_15564 Sequoiadendron giganteum
SEGI_16359 Sequoiadendron giganteum
SEGI_25960 Sequoiadendron giganteum
SEGI_41360 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08812 Striga asiatica
SGA_v2.0_scaffold39G15245 Striga asiatica
SGA_v2.0_scaffold52G19237 Striga asiatica
SGA_v2.0_scaffold6G03397 Striga asiatica
SGA_v2.0_scaffold88G27320 Striga asiatica
SMO364G0076 Selaginella moellendorffii
Solyc02g086150.4 Solanum lycopersicum
Solyc02g093030.3 Solanum lycopersicum
Solyc12g037970.2 Solanum lycopersicum
Sopen02g030840 Solanum pennellii
Sopen02g037600 Solanum pennellii
Sopen12g017480 Solanum pennellii
Sp1g16380 Schrenkiella parvula
Sp6g24580 Schrenkiella parvula
Sp6g28000 Schrenkiella parvula
Sp7g03740 Schrenkiella parvula
TAR371G0286 Trochodendron aralioides
TAR374G1258 Trochodendron aralioides
TAR375G0398 Trochodendron aralioides
TAR622G1268 Trochodendron aralioides
THA.LOC104798713 Tarenaya hassleriana
THA.LOC104799049 Tarenaya hassleriana
THA.LOC104802439 Tarenaya hassleriana
THA.LOC104805575 Tarenaya hassleriana
Thecc.03G030200 Theobroma cacao
Thecc.04G132200 Theobroma cacao
Thecc.05G131300 Theobroma cacao
Thhalv10009989m.g Eutrema salsugineum
Thhalv10014539m.g Eutrema salsugineum
Thhalv10015697m.g Eutrema salsugineum
Thhalv10027897m.g Eutrema salsugineum
TPR.G20834 Trifolium pratense
TPR.G21709 Trifolium pratense
TPR.G24386 Trifolium pratense
TPR.G31537 Trifolium pratense
TPR.G33337 Trifolium pratense
TWI15G1221 Tripterygium wilfordii
TWI32G0391 Tripterygium wilfordii
TWI74G1157 Tripterygium wilfordii
unitig_32.g11882 Utricularia gibba
unitig_578.g15878 Utricularia gibba
unitig_747.g21355 Utricularia gibba
vmacro04233 Vaccinium macrocarpon
vmacro05539 Vaccinium macrocarpon
vmacro10236 Vaccinium macrocarpon
vmacro10237 Vaccinium macrocarpon
vmacro16452 Vaccinium macrocarpon
VMungo0251G0692 Vigna mungo
VMungo0251G2146 Vigna mungo
VMungo1215G2661 Vigna mungo
VMungo1383G2873 Vigna mungo
Zm00001eb016720 Zea mays
Zm00001eb125250 Zea mays
Zm00001eb156010 Zea mays
Zm00001eb294780 Zea mays
Zm00001eb335300 Zea mays

User provided reference genes

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