If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ), 'gf_id' => 'HOM05D001436', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001436' ), 'data_identifier' => 'HOM05D001436', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001436', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia33665' => 'ach', 'COL.COLO4_08698' => 'col', 'CSS0002549' => 'camsi', 'CSS0011870' => 'camsi', 'CSS0012058' => 'camsi', 'CSS0022880' => 'camsi', 'CSS0029770' => 'camsi', 'CSS0038357' => 'camsi', 'CSS0045650' => 'camsi', 'Lj6P789T46' => 'lonja', 'MBI01_g07127_MAGBIO' => 'mbi', 'MBI01_g12281_MAGBIO' => 'mbi', 'MBI01_g13739_MAGBIO' => 'mbi', 'MBI01_g13740_MAGBIO' => 'mbi', 'MBI01_g13742_MAGBIO' => 'mbi', 'MBI01_g14245_MAGBIO' => 'mbi', 'MBI01_g14246_MAGBIO' => 'mbi', 'MBI01_g16479_MAGBIO' => 'mbi', 'MBI01_g19096_MAGBIO' => 'mbi', 'MBI01_g19127_MAGBIO' => 'mbi', 'MBI01_g19128_MAGBIO' => 'mbi', 'MBI01_g24504_MAGBIO' => 'mbi', 'MBI01_g24505_MAGBIO' => 'mbi', 'MBI01_g29591_MAGBIO' => 'mbi', 'MBI01_g29592_MAGBIO' => 'mbi', 'MBI01_g37950_MAGBIO' => 'mbi', 'MBI01_g48011_MAGBIO' => 'mbi', 'MBI02_g02070_MAGBIO' => 'mbi', 'MBI02_g02071_MAGBIO' => 'mbi', 'MBI02_g03742_MAGBIO' => 'mbi', 'MBI02_g11173_MAGBIO' => 'mbi', 'MBI02_g11174_MAGBIO' => 'mbi', 'MBI02_g12200_MAGBIO' => 'mbi', 'MBI02_g17329_MAGBIO' => 'mbi', 'MBI02_g19117_MAGBIO' => 'mbi', 'MBI02_g19221_MAGBIO' => 'mbi', 'MBI02_g24290_MAGBIO' => 'mbi', 'MBI02_g25365_MAGBIO' => 'mbi', 'MBI02_g35761_MAGBIO' => 'mbi', 'MBI02_g35762_MAGBIO' => 'mbi', 'MBI02_g37235_MAGBIO' => 'mbi', 'MBI02_g39879_MAGBIO' => 'mbi', 'MBI02_g40132_MAGBIO' => 'mbi', 'MBI02_g45108_MAGBIO' => 'mbi', 'MBI02_g46873_MAGBIO' => 'mbi', 'MBI02_g47340_MAGBIO' => 'mbi', 'MBI03_g00029_MAGBIO' => 'mbi', 'MBI03_g01480_MAGBIO' => 'mbi', 'MBI03_g06007_MAGBIO' => 'mbi', 'MBI03_g10294_MAGBIO' => 'mbi', 'MBI03_g10295_MAGBIO' => 'mbi', 'MBI03_g10296_MAGBIO' => 'mbi', 'MBI03_g11909_MAGBIO' => 'mbi', 'MBI03_g16543_MAGBIO' => 'mbi', 'MBI03_g16544_MAGBIO' => 'mbi', 'MBI03_g18480_MAGBIO' => 'mbi', 'MBI03_g18946_MAGBIO' => 'mbi', 'MBI03_g22424_MAGBIO' => 'mbi', 'MBI03_g24008_MAGBIO' => 'mbi', 'MBI03_g27104_MAGBIO' => 'mbi', 'MBI03_g29278_MAGBIO' => 'mbi', 'MBI03_g29279_MAGBIO' => 'mbi', 'MBI03_g30212_MAGBIO' => 'mbi', 'MBI03_g44224_MAGBIO' => 'mbi', 'MBI04_g26964_MAGBIO' => 'mbi', 'MBI04_g27058_MAGBIO' => 'mbi', 'MBI04_g27911_MAGBIO' => 'mbi', 'MBI04_g32244_MAGBIO' => 'mbi', 'MBI04_g34412_MAGBIO' => 'mbi', 'MBI04_g41105_MAGBIO' => 'mbi', 'MBI04_g41106_MAGBIO' => 'mbi', 'MBI04_g44604_MAGBIO' => 'mbi', 'MBI05_g00167_MAGBIO' => 'mbi', 'MBI05_g00168_MAGBIO' => 'mbi', 'MBI05_g00169_MAGBIO' => 'mbi', 'MBI05_g01284_MAGBIO' => 'mbi', 'MBI05_g03758_MAGBIO' => 'mbi', 'MBI05_g04444_MAGBIO' => 'mbi', 'MBI05_g04588_MAGBIO' => 'mbi', 'MBI05_g05681_MAGBIO' => 'mbi', 'MBI05_g10005_MAGBIO' => 'mbi', 'MBI05_g10006_MAGBIO' => 'mbi', 'MBI05_g10007_MAGBIO' => 'mbi', 'MBI05_g10536_MAGBIO' => 'mbi', 'MBI05_g10537_MAGBIO' => 'mbi', 'MBI05_g12086_MAGBIO' => 'mbi', 'MBI05_g12577_MAGBIO' => 'mbi', 'MBI05_g12578_MAGBIO' => 'mbi', 'MBI05_g12579_MAGBIO' => 'mbi', 'MBI05_g12850_MAGBIO' => 'mbi', 'MBI05_g13268_MAGBIO' => 'mbi', 'MBI05_g16452_MAGBIO' => 'mbi', 'MBI05_g16548_MAGBIO' => 'mbi', 'MBI05_g16549_MAGBIO' => 'mbi', 'MBI05_g17481_MAGBIO' => 'mbi', 'MBI05_g19269_MAGBIO' => 'mbi', 'MBI05_g19537_MAGBIO' => 'mbi', 'MBI05_g19538_MAGBIO' => 'mbi', 'MBI05_g22677_MAGBIO' => 'mbi', 'MBI05_g24572_MAGBIO' => 'mbi', 'MBI05_g24863_MAGBIO' => 'mbi', 'MBI05_g29973_MAGBIO' => 'mbi', 'MBI05_g32032_MAGBIO' => 'mbi', 'MBI05_g33298_MAGBIO' => 'mbi', 'MBI05_g35102_MAGBIO' => 'mbi', 'MBI05_g35103_MAGBIO' => 'mbi', 'MBI05_g37663_MAGBIO' => 'mbi', 'MBI05_g37664_MAGBIO' => 'mbi', 'MBI05_g37665_MAGBIO' => 'mbi', 'MBI05_g37666_MAGBIO' => 'mbi', 'MBI05_g39741_MAGBIO' => 'mbi', 'MBI05_g40086_MAGBIO' => 'mbi', 'MBI05_g43850_MAGBIO' => 'mbi', 'MBI05_g43912_MAGBIO' => 'mbi', 'MBI05_g43918_MAGBIO' => 'mbi', 'MBI05_g43939_MAGBIO' => 'mbi', 'MBI05_g43940_MAGBIO' => 'mbi', 'MBI05_g47091_MAGBIO' => 'mbi', 'MBI05_g47132_MAGBIO' => 'mbi', 'MBI06_g00022_MAGBIO' => 'mbi', 'MBI06_g00023_MAGBIO' => 'mbi', 'MBI06_g00024_MAGBIO' => 'mbi', 'MBI06_g07517_MAGBIO' => 'mbi', 'MBI06_g12323_MAGBIO' => 'mbi', 'MBI06_g14750_MAGBIO' => 'mbi', 'MBI06_g15026_MAGBIO' => 'mbi', 'MBI06_g16067_MAGBIO' => 'mbi', 'MBI06_g23281_MAGBIO' => 'mbi', 'MBI06_g26688_MAGBIO' => 'mbi', 'MBI06_g26689_MAGBIO' => 'mbi', 'MBI06_g26880_MAGBIO' => 'mbi', 'MBI06_g29487_MAGBIO' => 'mbi', 'MBI06_g46051_MAGBIO' => 'mbi', 'MBI06_g46272_MAGBIO' => 'mbi', 'MBI07_g02904_MAGBIO' => 'mbi', 'MBI07_g03820_MAGBIO' => 'mbi', 'MBI07_g03822_MAGBIO' => 'mbi', 'MBI07_g03823_MAGBIO' => 'mbi', 'MBI07_g03831_MAGBIO' => 'mbi', 'MBI07_g03832_MAGBIO' => 'mbi', 'MBI07_g05959_MAGBIO' => 'mbi', 'MBI07_g05960_MAGBIO' => 'mbi', 'MBI07_g06422_MAGBIO' => 'mbi', 'MBI07_g30845_MAGBIO' => 'mbi', 'MBI07_g31079_MAGBIO' => 'mbi', 'MBI07_g32586_MAGBIO' => 'mbi', 'MBI07_g32587_MAGBIO' => 'mbi', 'MBI07_g36530_MAGBIO' => 'mbi', 'MBI07_g44744_MAGBIO' => 'mbi', 'MBI08_g04391_MAGBIO' => 'mbi', 'MBI08_g12261_MAGBIO' => 'mbi', 'MBI08_g16117_MAGBIO' => 'mbi', 'MBI08_g16119_MAGBIO' => 'mbi', 'MBI08_g17167_MAGBIO' => 'mbi', 'MBI08_g21303_MAGBIO' => 'mbi', 'MBI08_g21304_MAGBIO' => 'mbi', 'MBI08_g23113_MAGBIO' => 'mbi', 'MBI08_g23489_MAGBIO' => 'mbi', 'MBI08_g24352_MAGBIO' => 'mbi', 'MBI08_g25555_MAGBIO' => 'mbi', 'MBI08_g29586_MAGBIO' => 'mbi', 'MBI08_g30154_MAGBIO' => 'mbi', 'MBI08_g33659_MAGBIO' => 'mbi', 'MBI08_g40823_MAGBIO' => 'mbi', 'MBI08_g46023_MAGBIO' => 'mbi', 'MBI09_g02045_MAGBIO' => 'mbi', 'MBI09_g02153_MAGBIO' => 'mbi', 'MBI09_g02154_MAGBIO' => 'mbi', 'MBI09_g09413_MAGBIO' => 'mbi', 'MBI09_g10056_MAGBIO' => 'mbi', 'MBI09_g15696_MAGBIO' => 'mbi', 'MBI09_g15831_MAGBIO' => 'mbi', 'MBI09_g15832_MAGBIO' => 'mbi', 'MBI09_g18084_MAGBIO' => 'mbi', 'MBI09_g33838_MAGBIO' => 'mbi', 'MBI09_g35118_MAGBIO' => 'mbi', 'MBI09_g36096_MAGBIO' => 'mbi', 'MBI09_g38224_MAGBIO' => 'mbi', 'MBI09_g38225_MAGBIO' => 'mbi', 'MBI09_g38238_MAGBIO' => 'mbi', 'MBI09_g38239_MAGBIO' => 'mbi', 'MBI09_g38457_MAGBIO' => 'mbi', 'MBI09_g38458_MAGBIO' => 'mbi', 'MBI09_g38459_MAGBIO' => 'mbi', 'MBI09_g40169_MAGBIO' => 'mbi', 'MBI09_g41428_MAGBIO' => 'mbi', 'MBI09_g42087_MAGBIO' => 'mbi', 'MBI09_g42912_MAGBIO' => 'mbi', 'MBI10_g03804_MAGBIO' => 'mbi', 'MBI10_g05405_MAGBIO' => 'mbi', 'MBI10_g05773_MAGBIO' => 'mbi', 'MBI10_g16743_MAGBIO' => 'mbi', 'MBI10_g17799_MAGBIO' => 'mbi', 'MBI10_g19604_MAGBIO' => 'mbi', 'MBI10_g20799_MAGBIO' => 'mbi', 'MBI10_g21706_MAGBIO' => 'mbi', 'MBI10_g26209_MAGBIO' => 'mbi', 'MBI10_g32341_MAGBIO' => 'mbi', 'MBI10_g34382_MAGBIO' => 'mbi', 'MBI10_g39522_MAGBIO' => 'mbi', 'MBI10_g42857_MAGBIO' => 'mbi', 'MBI11_g00240_MAGBIO' => 'mbi', 'MBI11_g02084_MAGBIO' => 'mbi', 'MBI11_g07227_MAGBIO' => 'mbi', 'MBI11_g09151_MAGBIO' => 'mbi', 'MBI11_g15733_MAGBIO' => 'mbi', 'MBI11_g22734_MAGBIO' => 'mbi', 'MBI11_g22735_MAGBIO' => 'mbi', 'MBI11_g41301_MAGBIO' => 'mbi', 'MBI11_g42060_MAGBIO' => 'mbi', 'MBI11_g42450_MAGBIO' => 'mbi', 'MBI11_g43378_MAGBIO' => 'mbi', 'MBI12_g00117_MAGBIO' => 'mbi', 'MBI12_g14768_MAGBIO' => 'mbi', 'MBI12_g14769_MAGBIO' => 'mbi', 'MBI12_g14770_MAGBIO' => 'mbi', 'MBI12_g15038_MAGBIO' => 'mbi', 'MBI12_g21358_MAGBIO' => 'mbi', 'MBI12_g21572_MAGBIO' => 'mbi', 'MBI12_g21573_MAGBIO' => 'mbi', 'MBI12_g26629_MAGBIO' => 'mbi', 'MBI12_g30045_MAGBIO' => 'mbi', 'MBI12_g31047_MAGBIO' => 'mbi', 'MBI12_g36308_MAGBIO' => 'mbi', 'MBI12_g37963_MAGBIO' => 'mbi', 'MBI12_g41553_MAGBIO' => 'mbi', 'MBI12_g41793_MAGBIO' => 'mbi', 'MBI12_g41819_MAGBIO' => 'mbi', 'MBI12_g42937_MAGBIO' => 'mbi', 'MBI12_g42938_MAGBIO' => 'mbi', 'MBI12_g43238_MAGBIO' => 'mbi', 'MBI12_g45484_MAGBIO' => 'mbi', 'MBI13_g04210_MAGBIO' => 'mbi', 'MBI13_g17734_MAGBIO' => 'mbi', 'MBI13_g17735_MAGBIO' => 'mbi', 'MBI13_g20253_MAGBIO' => 'mbi', 'MBI13_g21374_MAGBIO' => 'mbi', 'MBI13_g35196_MAGBIO' => 'mbi', 'MBI13_g39609_MAGBIO' => 'mbi', 'MBI13_g40122_MAGBIO' => 'mbi', 'MBI13_g40124_MAGBIO' => 'mbi', 'MBI14_g03110_MAGBIO' => 'mbi', 'MBI14_g08687_MAGBIO' => 'mbi', 'MBI14_g13892_MAGBIO' => 'mbi', 'MBI14_g15642_MAGBIO' => 'mbi', 'MBI14_g15643_MAGBIO' => 'mbi', 'MBI14_g17749_MAGBIO' => 'mbi', 'MBI14_g24320_MAGBIO' => 'mbi', 'MBI14_g25241_MAGBIO' => 'mbi', 'MBI14_g26991_MAGBIO' => 'mbi', 'MBI14_g31656_MAGBIO' => 'mbi', 'MBI14_g32140_MAGBIO' => 'mbi', 'MBI14_g37139_MAGBIO' => 'mbi', 'MBI14_g41050_MAGBIO' => 'mbi', 'MBI15_g00254_MAGBIO' => 'mbi', 'MBI15_g02577_MAGBIO' => 'mbi', 'MBI15_g02578_MAGBIO' => 'mbi', 'MBI15_g11945_MAGBIO' => 'mbi', 'MBI15_g12538_MAGBIO' => 'mbi', 'MBI15_g12539_MAGBIO' => 'mbi', 'MBI15_g13724_MAGBIO' => 'mbi', 'MBI15_g16379_MAGBIO' => 'mbi', 'MBI15_g16756_MAGBIO' => 'mbi', 'MBI15_g17257_MAGBIO' => 'mbi', 'MBI15_g17258_MAGBIO' => 'mbi', 'MBI15_g18225_MAGBIO' => 'mbi', 'MBI15_g19418_MAGBIO' => 'mbi', 'MBI15_g19749_MAGBIO' => 'mbi', 'MBI15_g23592_MAGBIO' => 'mbi', 'MBI15_g25759_MAGBIO' => 'mbi', 'MBI15_g28792_MAGBIO' => 'mbi', 'MBI15_g28860_MAGBIO' => 'mbi', 'MBI15_g28861_MAGBIO' => 'mbi', 'MBI15_g33745_MAGBIO' => 'mbi', 'MBI15_g33746_MAGBIO' => 'mbi', 'MBI15_g33747_MAGBIO' => 'mbi', 'MBI15_g34028_MAGBIO' => 'mbi', 'MBI15_g34029_MAGBIO' => 'mbi', 'MBI15_g35412_MAGBIO' => 'mbi', 'MBI15_g35687_MAGBIO' => 'mbi', 'MBI15_g38635_MAGBIO' => 'mbi', 'MBI15_g40530_MAGBIO' => 'mbi', 'MBI15_g40753_MAGBIO' => 'mbi', 'MBI15_g43066_MAGBIO' => 'mbi', 'MBI15_g43067_MAGBIO' => 'mbi', 'MBI15_g43068_MAGBIO' => 'mbi', 'MBI15_g44888_MAGBIO' => 'mbi', 'MBI16_g09913_MAGBIO' => 'mbi', 'MBI16_g09914_MAGBIO' => 'mbi', 'MBI16_g12379_MAGBIO' => 'mbi', 'MBI16_g17268_MAGBIO' => 'mbi', 'MBI16_g17269_MAGBIO' => 'mbi', 'MBI16_g17955_MAGBIO' => 'mbi', 'MBI16_g17956_MAGBIO' => 'mbi', 'MBI16_g17960_MAGBIO' => 'mbi', 'MBI16_g24359_MAGBIO' => 'mbi', 'MBI16_g24392_MAGBIO' => 'mbi', 'MBI16_g25248_MAGBIO' => 'mbi', 'MBI16_g25487_MAGBIO' => 'mbi', 'MBI16_g26216_MAGBIO' => 'mbi', 'MBI16_g35198_MAGBIO' => 'mbi', 'MBI16_g40455_MAGBIO' => 'mbi', 'MBI16_g43477_MAGBIO' => 'mbi', 'MBI16_g45117_MAGBIO' => 'mbi', 'MBI16_g46115_MAGBIO' => 'mbi', 'MBI16_g46116_MAGBIO' => 'mbi', 'MBI17_g11654_MAGBIO' => 'mbi', 'MBI17_g12014_MAGBIO' => 'mbi', 'MBI17_g16529_MAGBIO' => 'mbi', 'MBI17_g19042_MAGBIO' => 'mbi', 'MBI17_g19043_MAGBIO' => 'mbi', 'MBI17_g24517_MAGBIO' => 'mbi', 'MBI17_g25611_MAGBIO' => 'mbi', 'MBI17_g26637_MAGBIO' => 'mbi', 'MBI17_g26638_MAGBIO' => 'mbi', 'MBI17_g29497_MAGBIO' => 'mbi', 'MBI17_g31741_MAGBIO' => 'mbi', 'MBI17_g31742_MAGBIO' => 'mbi', 'MBI17_g33089_MAGBIO' => 'mbi', 'MBI17_g33110_MAGBIO' => 'mbi', 'MBI17_g33111_MAGBIO' => 'mbi', 'MBI17_g36896_MAGBIO' => 'mbi', 'MBI17_g38448_MAGBIO' => 'mbi', 'MBI17_g42669_MAGBIO' => 'mbi', 'MBI17_g42670_MAGBIO' => 'mbi', 'MBI17_g43984_MAGBIO' => 'mbi', 'MBI17_g43985_MAGBIO' => 'mbi', 'MBI17_g44063_MAGBIO' => 'mbi', 'MBI17_g45138_MAGBIO' => 'mbi', 'MBI17_g45176_MAGBIO' => 'mbi', 'MBI17_g46079_MAGBIO' => 'mbi', 'MBI18_g01104_MAGBIO' => 'mbi', 'MBI18_g06093_MAGBIO' => 'mbi', 'MBI18_g06094_MAGBIO' => 'mbi', 'MBI18_g07605_MAGBIO' => 'mbi', 'MBI18_g07606_MAGBIO' => 'mbi', 'MBI18_g07899_MAGBIO' => 'mbi', 'MBI18_g07902_MAGBIO' => 'mbi', 'MBI18_g07904_MAGBIO' => 'mbi', 'MBI18_g11469_MAGBIO' => 'mbi', 'MBI18_g12535_MAGBIO' => 'mbi', 'MBI18_g12536_MAGBIO' => 'mbi', 'MBI18_g12537_MAGBIO' => 'mbi', 'MBI18_g13210_MAGBIO' => 'mbi', 'MBI18_g14127_MAGBIO' => 'mbi', 'MBI18_g14475_MAGBIO' => 'mbi', 'MBI18_g15797_MAGBIO' => 'mbi', 'MBI18_g15798_MAGBIO' => 'mbi', 'MBI18_g15816_MAGBIO' => 'mbi', 'MBI18_g19058_MAGBIO' => 'mbi', 'MBI18_g24152_MAGBIO' => 'mbi', 'MBI18_g24153_MAGBIO' => 'mbi', 'MBI18_g24807_MAGBIO' => 'mbi', 'MBI18_g24922_MAGBIO' => 'mbi', 'MBI18_g25255_MAGBIO' => 'mbi', 'MBI18_g27018_MAGBIO' => 'mbi', 'MBI18_g30346_MAGBIO' => 'mbi', 'MBI18_g31595_MAGBIO' => 'mbi', 'MBI18_g31598_MAGBIO' => 'mbi', 'MBI18_g32055_MAGBIO' => 'mbi', 'MBI18_g32056_MAGBIO' => 'mbi', 'MBI18_g34712_MAGBIO' => 'mbi', 'MBI18_g37372_MAGBIO' => 'mbi', 'MBI18_g37985_MAGBIO' => 'mbi', 'MBI18_g37988_MAGBIO' => 'mbi', 'MBI18_g38986_MAGBIO' => 'mbi', 'MBI18_g38987_MAGBIO' => 'mbi', 'MBI18_g39969_MAGBIO' => 'mbi', 'MBI18_g40415_MAGBIO' => 'mbi', 'MBI18_g41110_MAGBIO' => 'mbi', 'MBI18_g41196_MAGBIO' => 'mbi', 'MBI18_g41198_MAGBIO' => 'mbi', 'MBI18_g41470_MAGBIO' => 'mbi', 'MBI18_g41471_MAGBIO' => 'mbi', 'MBI18_g41472_MAGBIO' => 'mbi', 'MBI18_g42380_MAGBIO' => 'mbi', 'MBI18_g44344_MAGBIO' => 'mbi', 'MBI18_g44420_MAGBIO' => 'mbi', 'MBI18_g44421_MAGBIO' => 'mbi', 'MBI18_g46690_MAGBIO' => 'mbi', 'MBI18_g46691_MAGBIO' => 'mbi', 'MBI19_g00632_MAGBIO' => 'mbi', 'MBI19_g00633_MAGBIO' => 'mbi', 'MBI19_g00635_MAGBIO' => 'mbi', 'MBI19_g02325_MAGBIO' => 'mbi', 'MBI19_g04412_MAGBIO' => 'mbi', 'MBI19_g04413_MAGBIO' => 'mbi', 'MBI19_g04414_MAGBIO' => 'mbi', 'MBI19_g06297_MAGBIO' => 'mbi', 'MBI19_g08300_MAGBIO' => 'mbi', 'MBI19_g10569_MAGBIO' => 'mbi', 'MBI19_g10570_MAGBIO' => 'mbi', 'MBI19_g10571_MAGBIO' => 'mbi', 'MBI19_g14803_MAGBIO' => 'mbi', 'MBI19_g14804_MAGBIO' => 'mbi', 'MBI19_g16140_MAGBIO' => 'mbi', 'MBI19_g20768_MAGBIO' => 'mbi', 'MBI19_g20769_MAGBIO' => 'mbi', 'MBI19_g21658_MAGBIO' => 'mbi', 'MBI19_g22427_MAGBIO' => 'mbi', 'MBI19_g22428_MAGBIO' => 'mbi', 'MBI19_g22784_MAGBIO' => 'mbi', 'MBI19_g23981_MAGBIO' => 'mbi', 'MBI19_g23982_MAGBIO' => 'mbi', 'MBI19_g24997_MAGBIO' => 'mbi', 'MBI19_g34082_MAGBIO' => 'mbi', 'MBI19_g36249_MAGBIO' => 'mbi', 'MBI19_g36250_MAGBIO' => 'mbi', 'MBI19_g36348_MAGBIO' => 'mbi', 'MBI19_g37268_MAGBIO' => 'mbi', 'MBI19_g38107_MAGBIO' => 'mbi', 'MBI19_g38108_MAGBIO' => 'mbi', 'MBI19_g38170_MAGBIO' => 'mbi', 'MBI19_g38171_MAGBIO' => 'mbi', 'MBI19_g39985_MAGBIO' => 'mbi', 'MBI19_g39986_MAGBIO' => 'mbi', 'MBI19_g40442_MAGBIO' => 'mbi', 'MBI19_g40443_MAGBIO' => 'mbi', 'MBI19_g40583_MAGBIO' => 'mbi', 'MBI19_g40584_MAGBIO' => 'mbi', 'MBI19_g41383_MAGBIO' => 'mbi', 'MBI19_g41384_MAGBIO' => 'mbi', 'MBI19_g41827_MAGBIO' => 'mbi', 'MBI19_g41828_MAGBIO' => 'mbi', 'MBI19_g43235_MAGBIO' => 'mbi', 'MBI19_g43236_MAGBIO' => 'mbi', 'MBI19_g43499_MAGBIO' => 'mbi', 'MBI19_g45780_MAGBIO' => 'mbi', 'Oeu003844.1' => 'oeu', 'Oeu015972.1' => 'oeu', 'Oeu033343.1' => 'oeu', 'Oeu035291.1' => 'oeu', 'Oeu053585.1' => 'oeu', 'QL05p024135' => 'qlo', 'Rhsim05G0128200' => 'rsi', 'Rhsim10G0110500' => 'rsi', 'Sc11g0004310' => 'sci', 'Sc11g0004640' => 'sci' ) $gf_id = 'HOM05D001436' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001436' ) $data_identifier = 'HOM05D001436' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'col' => (int) 1, 'camsi' => (int) 7, 'lonja' => (int) 1, 'mbi' => (int) 418, 'oeu' => (int) 5, 'qlo' => (int) 1, 'rsi' => (int) 2, 'sci' => (int) 2 ) $gf_gene_species = 'sci' $gf_gene_id = 'Sc11g0004640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0