Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p11770 Brassica napus
A04p12210 Brassica napus
A07p25850 Brassica napus
A09p01100 Brassica napus
A09p01110 Brassica napus
A09p54220 Brassica napus
A10p10070 Brassica napus
A10p10080 Brassica napus
Aa31LG10G16100 Aethionema arabicum
Aa31LG3G8870 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3301 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3302 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.618 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.856 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2217 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2512 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2760 Anthoceros agrestis
Actinidia03133 Actinidia chinensis
Actinidia06405 Actinidia chinensis
Actinidia20863 Actinidia chinensis
Actinidia20965 Actinidia chinensis
Actinidia21340 Actinidia chinensis
Actinidia21341 Actinidia chinensis
Actinidia31834 Actinidia chinensis
Actinidia34148 Actinidia chinensis
Ah.02g126370 Amaranthus hybridus
Ah.04g153520 Amaranthus hybridus
Ah.16g106580 Amaranthus hybridus
AL5G29550 Arabidopsis lyrata
AL5G44840 Arabidopsis lyrata
AL7G11820 Arabidopsis lyrata
AL8G26980 Arabidopsis lyrata
Aqoxy2G01498 Aquilegia oxysepala
Aqoxy5G01895 Aquilegia oxysepala
Aqoxy6G01697 Aquilegia oxysepala
Aqoxy6G01698 Aquilegia oxysepala
Aqoxy7G00253 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.18GXDP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BA6YY5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D8GG75 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KLDP20 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QYSL7K Arachis hypogaea
AT3G62120 Arabidopsis thaliana
AT5G10880 Arabidopsis thaliana
AT5G52520 Arabidopsis thaliana
ATR0661G435 Amborella trichopoda
ATR0730G099 Amborella trichopoda
Atru.chr1.370 Acer truncatum
Atru.chr1.387 Acer truncatum
Atru.chr1.3904 Acer truncatum
Atru.chr4.407 Acer truncatum
Atru.chr5.3423 Acer truncatum
Atru.ctg97_1.1 Acer truncatum
AUR62012943 Chenopodium quinoa
AUR62027143 Chenopodium quinoa
AUR62027146 Chenopodium quinoa
AUR62027147 Chenopodium quinoa
AUR62029493 Chenopodium quinoa
AUR62035357 Chenopodium quinoa
AUR62035889 Chenopodium quinoa
AUR62037623 Chenopodium quinoa
AUR62040861 Chenopodium quinoa
BcaB02g07355 Brassica carinata
BcaB02g07357 Brassica carinata
BcaB05g21963 Brassica carinata
BcaB05g23847 Brassica carinata
BcaB06g27310 Brassica carinata
BcaB06g27314 Brassica carinata
BcaB06g27315 Brassica carinata
BcaB06g27332 Brassica carinata
BcaB08g35606 Brassica carinata
BcaC02g10103 Brassica carinata
BcaC03g14524 Brassica carinata
BcaC04g20579 Brassica carinata
BcaC05g25569 Brassica carinata
BcaC07g40705 Brassica carinata
BcaC08g43334 Brassica carinata
BcaC08g45184 Brassica carinata
BcaC08g45185 Brassica carinata
BcaNung01443 Brassica carinata
BcaNung07179 Brassica carinata
BNapus_Darmor_BZH_scaffold_232p00120 Brassica napus
BolC2t08096H Brassica oleracea
BolC4t24837H Brassica oleracea
BolC4t26172H Brassica oleracea
BolC4t26174H Brassica oleracea
BolC4t26175H Brassica oleracea
BolC6t37974H Brassica oleracea
BolC6t37975H Brassica oleracea
BolC7t45765H Brassica oleracea
BolC8t51286H Brassica oleracea
BolC9t55948H Brassica oleracea
BolC9t57078H Brassica oleracea
BraA02t06242Z Brassica rapa
BraA04t16882Z Brassica rapa
BraA07t30231Z Brassica rapa
BraA07t30232Z Brassica rapa
BraA09t37959Z Brassica rapa
BraA09t40834Z Brassica rapa
BraA10t43089Z Brassica rapa
C02p19590 Brassica napus
C04p45860 Brassica napus
C04p45920 Brassica napus
C06p06930 Brassica napus
C06p28090 Brassica napus
C07p00790 Brassica napus
C07p52640 Brassica napus
C08p37080 Brassica napus
C09p41940 Brassica napus
CAN.G1490.15 Capsicum annuum
CAN.G407.28 Capsicum annuum
CAN.G407.29 Capsicum annuum
CANSAT21G1393 Cannabis sativa
CANSAT54G2973 Cannabis sativa
CARHR172460 Cardamine hirsuta
CARHR265490 Cardamine hirsuta
Carub.0005s2008 Capsella rubella
Carub.0005s2887 Capsella rubella
Carub.0008s0152 Capsella rubella
Carub.0008s1264 Capsella rubella
Ca_09246_v3 Cicer arietinum L.
Ca_15468_v3 Cicer arietinum L.
Ca_15983_v3 Cicer arietinum L.
CBR_g8325 Chara braunii
CBR_g8856 Chara braunii
Cc00_g01070 Coffea canephora
Cc00_g34340 Coffea canephora
Cc02_g02500 Coffea canephora
Cc02_g18490 Coffea canephora
Cc05_g00870 Coffea canephora
Cc05_g07020 Coffea canephora
Cc05_g08880 Coffea canephora
Cc07_g14460 Coffea canephora
Cc11_g01030 Coffea canephora
CDE06G1090 Ceratophyllum demersum
CDE08G1059 Ceratophyllum demersum
CDE11G0932 Ceratophyllum demersum
Cfa004912 Carpinus fangiana
Cfa016279 Carpinus fangiana
Cfa023476 Carpinus fangiana
Ciclev10004659m.g Citrus clementina
Ciclev10019765m.g Citrus clementina
Ciclev10031253m.g Citrus clementina
CiPaw.05G263200 Carya illinoinensis
CiPaw.07G125500 Carya illinoinensis
CiPaw.08G082700 Carya illinoinensis
CiPaw.13G167600 Carya illinoinensis
ClCG01G007170 Citrullus lanatus
ClCG05G008280 Citrullus lanatus
ClCG05G008300 Citrullus lanatus
ClCG07G015700 Citrullus lanatus
COL.COLO4_23130 Corchorus olitorius
COL.COLO4_36928 Corchorus olitorius
Cpa.g.sc107.92 Carica papaya
Cpa.g.sc107.96 Carica papaya
Cpa.g.sc285.2 Carica papaya
Cre07.g351300 Chlamydomonas reinhardtii
Cre09.g406200 Chlamydomonas reinhardtii
Cre10.g429100 Chlamydomonas reinhardtii
Cre12.g549850 Chlamydomonas reinhardtii
CsaV3_3G018830 Cucumis sativus L.
CsaV3_4G003400 Cucumis sativus L.
CsaV3_5G018610 Cucumis sativus L.
CSS0001759 Camellia sinensis var. sinensis
CSS0006615 Camellia sinensis var. sinensis
CSS0009156 Camellia sinensis var. sinensis
CSS0016541 Camellia sinensis var. sinensis
CSS0017075 Camellia sinensis var. sinensis
CSS0043276 Camellia sinensis var. sinensis
CSS0049825 Camellia sinensis var. sinensis
DCAR_002557 Daucus carota
DCAR_009384 Daucus carota
DCAR_014517 Daucus carota
Dinv12081 Davidia involucrata
Dinv28396 Davidia involucrata
Dinv29495 Davidia involucrata
Dinv33171 Davidia involucrata
Dinv35240 Davidia involucrata
Duzib068G1356 Durio zibethinus
Duzib084G0352 Durio zibethinus
Duzib133G0171 Durio zibethinus
Duzib205G1919 Durio zibethinus
Duzib268G0962 Durio zibethinus
Duzib268G1140 Durio zibethinus
Duzib268G1550 Durio zibethinus
ECA236G4070 Erigeron canadensis
ECA238G2766 Erigeron canadensis
ECA248G2670 Erigeron canadensis
EL10Ac2g03345 Beta vulgaris
EL10Ac2g03885 Beta vulgaris
EL10Ac3g06719 Beta vulgaris
Eucgr.A02753 Eucalyptus grandis
Eucgr.J00690 Eucalyptus grandis
Eucgr.K00563 Eucalyptus grandis
FAN02G1769 Fragaria x ananassa
FAN04G1960 Fragaria x ananassa
FAN05G0319 Fragaria x ananassa
FAN05G3683 Fragaria x ananassa
FAN05G4243 Fragaria x ananassa
FAN05G5483 Fragaria x ananassa
FAN07G2033 Fragaria x ananassa
FAN08G3530 Fragaria x ananassa
FAN09G0530 Fragaria x ananassa
FAN09G0656 Fragaria x ananassa
FAN09G2421 Fragaria x ananassa
FAN12G1773 Fragaria x ananassa
FAN13G2235 Fragaria x ananassa
FAN14G4573 Fragaria x ananassa
FAN14G4931 Fragaria x ananassa
FAN17G1356 Fragaria x ananassa
FAN24G2739 Fragaria x ananassa
FvH4_2g20861 Fragaria vesca
FvH4_2g20862 Fragaria vesca
FvH4_4g21680 Fragaria vesca
FvH4_5g00340 Fragaria vesca
FvH4_6g31250 Fragaria vesca
FvH4_6g47400 Fragaria vesca
Glyma.03G224500 Glycine max
Glyma.09G133200 Glycine max
Glyma.14G153800 Glycine max
Glyma.16G179800 Glycine max
Glyma.19G221400 Glycine max
Gohir.A06G209000 Gossypium hirsutum
Gohir.A12G120000 Gossypium hirsutum
Gohir.A12G255700 Gossypium hirsutum
Gohir.D02G104232 Gossypium hirsutum
Gohir.D04G113650 Gossypium hirsutum
Gohir.D05G353500 Gossypium hirsutum
Gohir.D06G146050 Gossypium hirsutum
Gohir.D06G151800 Gossypium hirsutum
Gohir.D06G212000 Gossypium hirsutum
Gohir.D07G127900 Gossypium hirsutum
Gohir.D12G086500 Gossypium hirsutum
Gohir.D12G123600 Gossypium hirsutum
Gohir.D12G140050 Gossypium hirsutum
Gohir.D12G257100 Gossypium hirsutum
Gohir.D13G173600 Gossypium hirsutum
Gorai.001G106400 Gossypium raimondii
Gorai.005G118300 Gossypium raimondii
Gorai.006G182200 Gossypium raimondii
Gorai.008G134700 Gossypium raimondii
Gorai.008G151500 Gossypium raimondii
Gorai.008G275300 Gossypium raimondii
Gorai.009G386000 Gossypium raimondii
Gorai.010G177100 Gossypium raimondii
Gorai.010G177200 Gossypium raimondii
Gorai.010G254000 Gossypium raimondii
GSVIVG01028250001 Vitis vinifera
GSVIVG01028877001 Vitis vinifera
HanXRQChr04g0120461 Helianthus annuus
HanXRQChr07g0206941 Helianthus annuus
HanXRQChr15g0480911 Helianthus annuus
Haze_00033 Corylus avellana
Haze_05147 Corylus avellana
Haze_26683 Corylus avellana
Hma1.2p1_0227F.1_g096120 Hydrangea macrophylla
Hma1.2p1_0227F.1_g096130 Hydrangea macrophylla
Hma1.2p1_0327F.1_g126300 Hydrangea macrophylla
Hma1.2p1_0327F.1_g126310 Hydrangea macrophylla
Hma1.2p1_0484F.1_g162960 Hydrangea macrophylla
Hma1.2p1_0484F.1_g162965 Hydrangea macrophylla
Hma1.2p1_0636F.1_g193340 Hydrangea macrophylla
HPP92_001179 Vanilla planifolia
HPP92_001947 Vanilla planifolia
HPP92_015650 Vanilla planifolia
HPP92_015654 Vanilla planifolia
HPP92_028053 Vanilla planifolia
Hund12464 Selenicereus undatus
Hund19272 Selenicereus undatus
Lalb_Chr02g0141201 Lupinus albus
Lalb_Chr02g0141421 Lupinus albus
Lalb_Chr15g0077891 Lupinus albus
Lj1C1004T3 Lonicera japonica
Lj1g0011311 Lotus japonicus
Lj2g0010468 Lotus japonicus
Lj2g0023395 Lotus japonicus
Lj3C841G7 Lonicera japonica
Lj6A703T91 Lonicera japonica
Lj6g0016572 Lotus japonicus
Lsat_1_v5_gn_2_131140 Lactuca sativa
Lsat_1_v5_gn_8_103640 Lactuca sativa
Lsat_1_v5_gn_9_93401 Lactuca sativa
Manes.01G235100 Manihot esculenta
Manes.14G023300 Manihot esculenta
Mapoly0025s0131 Marchantia polymorpha
Mapoly0051s0001 Marchantia polymorpha
MBI04_g21147_MAGBIO Magnolia biondii
MBI04_g21149_MAGBIO Magnolia biondii
MBI04_g21150_MAGBIO Magnolia biondii
MBI04_g30786_MAGBIO Magnolia biondii
MBI14_g06389_MAGBIO Magnolia biondii
MBI18_g10371_MAGBIO Magnolia biondii
MCO06G048 Micromonas commoda
MCO14G216 Micromonas commoda
MD01G1206900 Malus domestica
MD07G1277600 Malus domestica
MD07G1277700 Malus domestica
MD13G1156800 Malus domestica
MD16G1134100 Malus domestica
Medtr3g048190 Medicago truncatula
Medtr3g100910 Medicago truncatula
Medtr3g114550 Medicago truncatula
Medtr3g114570 Medicago truncatula
Medtr7g110660 Medicago truncatula
MELO3C005193.2 Cucumis melo
MELO3C017711.2 Cucumis melo
MELO3C019492.2 Cucumis melo
MELO3C029008.2 Cucumis melo
Migut.D02441 Erythranthe guttata
Migut.F01092 Erythranthe guttata
Migut.N02489 Erythranthe guttata
MSTRG.18762 Avicennia marina
MSTRG.21039 Avicennia marina
Nitab4.5_0000172g1620 Nicotiana tabacum
Nitab4.5_0000232g0190 Nicotiana tabacum
Nitab4.5_0000373g0210 Nicotiana tabacum
Nitab4.5_0001611g0080 Nicotiana tabacum
Nitab4.5_0002322g0120 Nicotiana tabacum
Nitab4.5_0002322g0150 Nicotiana tabacum
Nitab4.5_0004217g0010 Nicotiana tabacum
Nitab4.5_0005056g0110 Nicotiana tabacum
Nitab4.5_0006185g0010 Nicotiana tabacum
Nitab4.5_0006185g0030 Nicotiana tabacum
Nitab4.5_0011429g0010 Nicotiana tabacum
Nn1g01600 Nelumbo nucifera
Nn1g09397 Nelumbo nucifera
Nn7g37405 Nelumbo nucifera
Oeu007521.3 Olea europaea
Oeu033106.1 Olea europaea
Oeu038081.1 Olea europaea
Oeu045369.1 Olea europaea
Os07g0165000 Oryza sativa ssp. japonica
Os12g0443700 Oryza sativa ssp. japonica
Peaxi162Scf00045g00024 Petunia axillaris
Peaxi162Scf00207g00533 Petunia axillaris
Peaxi162Scf00647g00325 Petunia axillaris
PGR042G0190 Punica granatum
PGR142G3315 Punica granatum
PGSC0003DMG400014136 Solanum tuberosum
PGSC0003DMG400027526 Solanum tuberosum
PGSC0003DMG400028502 Solanum tuberosum
Phvul.001G218300 Phaseolus vulgaris
Phvul.004G109800 Phaseolus vulgaris
Potri.002G187000 Populus trichocarpa
Potri.004G078866 Populus trichocarpa
Potri.004G078932 Populus trichocarpa
Potri.014G112400 Populus trichocarpa
Potri.017G142500 Populus trichocarpa
Pp3c21_580 Physcomitrium patens
Pp3c2_3850 Physcomitrium patens
PRCOL_00004237 Prasinoderma coloniale
PRCOL_00007039 Prasinoderma coloniale
Prupe.1G103500 Prunus persica
Prupe.2G299500 Prunus persica
Prupe.5G076000 Prunus persica
Prupe.8G138800 Prunus persica
Psat3g016680 Pisum sativum
Psat5g012360 Pisum sativum
Psat5g045320 Pisum sativum
Psat7g034480 Pisum sativum
PSO173G0115 Papaver somniferum
PSO357G0154 Papaver somniferum
PSO384G2916 Papaver somniferum
PSO541G3847 Papaver somniferum
PSO675G7606 Papaver somniferum
QL09p013112 Quercus lobata
QL10p022575 Quercus lobata
QL11p011484 Quercus lobata
RcHm_v2.0_Chr1g0313171 Rosa chinensis
RcHm_v2.0_Chr2g0137801 Rosa chinensis
RcHm_v2.0_Chr2g0166461 Rosa chinensis
RcHm_v2.0_Chr4g0427891 Rosa chinensis
RcHm_v2.0_Chr5g0012941 Rosa chinensis
RcHm_v2.0_Chr5g0012951 Rosa chinensis
RcHm_v2.0_Chr5g0080771 Rosa chinensis
RcHm_v2.0_Chr6g0261561 Rosa chinensis
RcHm_v2.0_Chr6g0287271 Rosa chinensis
RcHm_v2.0_Chr7g0202211 Rosa chinensis
Rhsim01G0000400 Rhododendron simsii
Rhsim02G0055200 Rhododendron simsii
Rhsim09G0200200 Rhododendron simsii
Sabra04G0052400 Salix brachista
Sabra14G0082700 Salix brachista
Sabra17G0119400 Salix brachista
SalBow2G1075 Salvia bowleyana
SalBow2G2133 Salvia bowleyana
SalBow3G3029 Salvia bowleyana
SalBow6G3314 Salvia bowleyana
Sc09g0007270 Simmondsia chinensis
Sc18g0006170 Simmondsia chinensis
Sc25g0004870 Simmondsia chinensis
Sed0015133 Sechium edule
Sed0018120 Sechium edule
Sed0023675 Sechium edule
SEGI_03261 Sequoiadendron giganteum
SEGI_11320 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05300 Striga asiatica
SGA_v2.0_scaffold147G36388 Striga asiatica
SGA_v2.0_scaffold22G09857 Striga asiatica
SGA_v2.0_scaffold25G10876 Striga asiatica
SGA_v2.0_scaffold262G45927 Striga asiatica
SGA_v2.0_scaffold87G27134 Striga asiatica
SMO114G0131 Selaginella moellendorffii
SMO367G0299 Selaginella moellendorffii
Solyc01g096870.4 Solanum lycopersicum
Solyc03g117330.4 Solanum lycopersicum
Solyc06g068320.3 Solanum lycopersicum
Sopen01g040580 Solanum pennellii
Sopen03g036220 Solanum pennellii
Sopen06g025590 Solanum pennellii
Sp5g01250 Schrenkiella parvula
Sp6g14710 Schrenkiella parvula
TAR365G0316 Trochodendron aralioides
TAR633G0527 Trochodendron aralioides
TAR636G1793 Trochodendron aralioides
THA.LOC104811964 Tarenaya hassleriana
THA.LOC104817431 Tarenaya hassleriana
Thecc.01G325200 Theobroma cacao
Thecc.02G038600 Theobroma cacao
Thecc.02G185700 Theobroma cacao
Thecc.03G182500 Theobroma cacao
Thecc.04G208500 Theobroma cacao
Thhalv10005900m.g Eutrema salsugineum
Thhalv10011470m.g Eutrema salsugineum
Thhalv10013193m.g Eutrema salsugineum
TPR.G2469 Trifolium pratense
TPR.G26044 Trifolium pratense
TWI14G0872 Tripterygium wilfordii
TWI14G1260 Tripterygium wilfordii
TWI32G0004 Tripterygium wilfordii
TWI39G0800 Tripterygium wilfordii
TWI59G1486 Tripterygium wilfordii
unitig_27.g25116 Utricularia gibba
unitig_60.g25549 Utricularia gibba
vmacro09819 Vaccinium macrocarpon
vmacro18594 Vaccinium macrocarpon
VMungo0464G0041 Vigna mungo
VMungo0464G1027 Vigna mungo
VMungo0985G0009 Vigna mungo
VMungo1127G0793 Vigna mungo
VMungo1383G1850 Vigna mungo
Zm00001eb073240 Zea mays
Zm00001eb202580 Zea mays
Zm00001eb300750 Zea mays

User provided reference genes

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