Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00880 Brassica napus
A01p04750 Brassica napus
A07p43560 Brassica napus
A08p28550 Brassica napus
A09p42390 Brassica napus
Aa31LG6G15260 Aethionema arabicum
Aa31LG6G15270 Aethionema arabicum
Aa31LG7G6340 Aethionema arabicum
Aa31sc14G120 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1372 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3986__3987 Anthoceros agrestis
Actinidia10337 Actinidia chinensis
Actinidia28046 Actinidia chinensis
Actinidia28852 Actinidia chinensis
Actinidia29257 Actinidia chinensis
Ah.01g010130 Amaranthus hybridus
Ah.01g017400 Amaranthus hybridus
Ah.05g169760 Amaranthus hybridus
AL1G35880 Arabidopsis lyrata
AL7G12270 Arabidopsis lyrata
AL7G18030 Arabidopsis lyrata
AL7G48550 Arabidopsis lyrata
Aqoxy5G02618 Aquilegia oxysepala
Aqoxy6G00743 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3S4WCE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CY60UM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EI09ZL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GBZ8AX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S4MIP0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y1D24R Arachis hypogaea
AT1G22410 Arabidopsis thaliana
AT4G33510 Arabidopsis thaliana
AT4G39980 Arabidopsis thaliana
ATR0665G021 Amborella trichopoda
ATR0684G117 Amborella trichopoda
Atru.chr13.1135 Acer truncatum
Atru.chr3.1371 Acer truncatum
Atru.chr6.1176 Acer truncatum
AUR62010158 Chenopodium quinoa
AUR62013155 Chenopodium quinoa
AUR62018952 Chenopodium quinoa
AUR62027798 Chenopodium quinoa
BcaB02g08303 Brassica carinata
BcaB03g11908 Brassica carinata
BcaB03g16002 Brassica carinata
BcaB07g32255 Brassica carinata
BcaC05g26164 Brassica carinata
BcaC07g39156 Brassica carinata
BcaC08g47404 Brassica carinata
BcaC09g52168 Brassica carinata
BcaNung00921 Brassica carinata
BcaNung00922 Brassica carinata
BcaNung05193 Brassica carinata
BolC1t00098H Brassica oleracea
BolC1t00496H Brassica oleracea
BolC5t30845H Brassica oleracea
BolC6t40245H Brassica oleracea
BolC8t49790H Brassica oleracea
BraA01t00087Z Brassica rapa
BraA01t00458Z Brassica rapa
BraA07t31868Z Brassica rapa
BraA08t34783Z Brassica rapa
BraA09t39717Z Brassica rapa
C01p01010 Brassica napus
C01p05160 Brassica napus
C05p21500 Brassica napus
C06p52230 Brassica napus
C08p21500 Brassica napus
CAN.G170.43 Capsicum annuum
CAN.G313.2 Capsicum annuum
CAN.G523.51 Capsicum annuum
CAN.G905.33 Capsicum annuum
CAN.G905.34 Capsicum annuum
CAN.G970.11 Capsicum annuum
CANSAT11G1386 Cannabis sativa
CANSAT21G1856 Cannabis sativa
CARHR022760 Cardamine hirsuta
CARHR071730 Cardamine hirsuta
CARHR071740 Cardamine hirsuta
CARHR217900 Cardamine hirsuta
CARHR241610 Cardamine hirsuta
CARHR246700 Cardamine hirsuta
Carub.0001s2194 Capsella rubella
Carub.0007s0194 Capsella rubella
Carub.0007s0695 Capsella rubella
Ca_00143_v3 Cicer arietinum L.
Ca_13240_v3 Cicer arietinum L.
CBR_g23362 Chara braunii
CBR_g32659 Chara braunii
Cc00_g06780 Coffea canephora
Cc00_g20100 Coffea canephora
Cc04_g12740 Coffea canephora
Cc07_g14800 Coffea canephora
Cc07_g14820 Coffea canephora
Cc10_g06820 Coffea canephora
Cc10_g08050 Coffea canephora
CDE03G0072 Ceratophyllum demersum
CDE03G0321 Ceratophyllum demersum
CDE06G1800 Ceratophyllum demersum
CDE08G0129 Ceratophyllum demersum
CDE11G0631 Ceratophyllum demersum
CDE11G1156 Ceratophyllum demersum
Cfa002622 Carpinus fangiana
Cfa005669 Carpinus fangiana
Cfa012331 Carpinus fangiana
Cfa013660 Carpinus fangiana
Cfa026917 Carpinus fangiana
Ciclev10000835m.g Citrus clementina
Ciclev10025342m.g Citrus clementina
Ciclev10028255m.g Citrus clementina
CiPaw.03G144100 Carya illinoinensis
CiPaw.04G102800 Carya illinoinensis
CiPaw.05G033700 Carya illinoinensis
CiPaw.07G178000 Carya illinoinensis
CiPaw.08G047800 Carya illinoinensis
CiPaw.12G055900 Carya illinoinensis
ClCG01G018640 Citrullus lanatus
ClCG08G011210 Citrullus lanatus
ClCG09G015630 Citrullus lanatus
ClCG10G005080 Citrullus lanatus
COL.COLO4_06682 Corchorus olitorius
COL.COLO4_12028 Corchorus olitorius
COL.COLO4_19747 Corchorus olitorius
Cpa.g.sc209.38 Carica papaya
Cpa.g.sc36.162 Carica papaya
Cpa.g.sc55.86 Carica papaya
Cpa.g.sc98.32 Carica papaya
Cpa.g.sc98.33 Carica papaya
Cre17.g726750 Chlamydomonas reinhardtii
CsaV3_2G029790 Cucumis sativus L.
CsaV3_3G004760 Cucumis sativus L.
CsaV3_6G045310 Cucumis sativus L.
CsaV3_7G006730 Cucumis sativus L.
CSS0007188 Camellia sinensis var. sinensis
CSS0009924 Camellia sinensis var. sinensis
CSS0041050 Camellia sinensis var. sinensis
DCAR_011674 Daucus carota
DCAR_014209 Daucus carota
DCAR_019217 Daucus carota
Dinv13216 Davidia involucrata
Dinv19117 Davidia involucrata
Dinv24176 Davidia involucrata
Dinv44795 Davidia involucrata
Duzib041G0655 Durio zibethinus
Duzib084G0183 Durio zibethinus
Duzib093G0836 Durio zibethinus
Duzib116G0809 Durio zibethinus
Duzib211G0081 Durio zibethinus
ECA234G2829 Erigeron canadensis
ECA246G1089 Erigeron canadensis
ECA246G3034 Erigeron canadensis
EL10Ac1g01166 Beta vulgaris
EL10Ac2g03648 Beta vulgaris
EL10Ac9g21508 Beta vulgaris
Eucgr.F00366 Eucalyptus grandis
Eucgr.G00854 Eucalyptus grandis
Eucgr.H04748 Eucalyptus grandis
Eucgr.I00519 Eucalyptus grandis
Eucgr.L02803 Eucalyptus grandis
FAN04G0140 Fragaria x ananassa
FAN08G1547 Fragaria x ananassa
FAN08G3563 Fragaria x ananassa
FAN13G1330 Fragaria x ananassa
FAN18G1814 Fragaria x ananassa
FAN19G0524 Fragaria x ananassa
FAN23G1320 Fragaria x ananassa
FAN26G1739 Fragaria x ananassa
FAN28G2887 Fragaria x ananassa
FvH4_1g20450 Fragaria vesca
FvH4_5g20460 Fragaria vesca
FvH4_5g36810 Fragaria vesca
Glyma.02G208400 Glycine max
Glyma.06G101700 Glycine max
Glyma.14G176600 Glycine max
Glyma.15G054700 Glycine max
Gohir.A05G224800 Gossypium hirsutum
Gohir.A09G197100 Gossypium hirsutum
Gohir.A13G068500 Gossypium hirsutum
Gohir.D05G227250 Gossypium hirsutum
Gohir.D05G227300 Gossypium hirsutum
Gohir.D09G191700 Gossypium hirsutum
Gohir.D13G053400 Gossypium hirsutum
Gorai.006G214500 Gossypium raimondii
Gorai.009G235000 Gossypium raimondii
Gorai.013G060200 Gossypium raimondii
GSVIVG01004278001 Vitis vinifera
GSVIVG01006634001 Vitis vinifera
GSVIVG01009070001 Vitis vinifera
HanXRQChr02g0031991 Helianthus annuus
HanXRQChr02g0045661 Helianthus annuus
HanXRQChr05g0145671 Helianthus annuus
HanXRQChr05g0145701 Helianthus annuus
HanXRQChr05g0149611 Helianthus annuus
HanXRQChr05g0163011 Helianthus annuus
HanXRQChr09g0272031 Helianthus annuus
HanXRQChr10g0278251 Helianthus annuus
HanXRQChr16g0514411 Helianthus annuus
Haze_08361 Corylus avellana
Haze_10595 Corylus avellana
Haze_22294 Corylus avellana
Haze_24871 Corylus avellana
Haze_24880 Corylus avellana
Haze_26814 Corylus avellana
Hma1.2p1_0237F.1_g099610 Hydrangea macrophylla
Hma1.2p1_0461F.1_g157860 Hydrangea macrophylla
Hma1.2p1_0522F.1_g171780 Hydrangea macrophylla
HPP92_004277 Vanilla planifolia
HPP92_011164 Vanilla planifolia
Hund00074 Selenicereus undatus
Hund16894 Selenicereus undatus
Hund29881 Selenicereus undatus
Hund29882 Selenicereus undatus
Lalb_Chr04g0253071 Lupinus albus
Lalb_Chr10g0102491 Lupinus albus
Lalb_Chr17g0344241 Lupinus albus
Lalb_Chr18g0060501 Lupinus albus
Lalb_Chr23g0270411 Lupinus albus
Lalb_Chr23g0270421 Lupinus albus
Lalb_Chr23g0270431 Lupinus albus
Lalb_Chr23g0270441 Lupinus albus
Lj1g0011548 Lotus japonicus
Lj1g0017488 Lotus japonicus
Lj3C781T0 Lonicera japonica
Lj4C241G1 Lonicera japonica
Lj4C491G3 Lonicera japonica
Lj4C726T2 Lonicera japonica
Lj4C98G11 Lonicera japonica
Lj4P115T40 Lonicera japonica
Lj5C235T6 Lonicera japonica
Lj6g0023274 Lotus japonicus
Lsat_1_v5_gn_1_3320 Lactuca sativa
Lsat_1_v5_gn_5_108200 Lactuca sativa
Lsat_1_v5_gn_5_33881 Lactuca sativa
Lsat_1_v5_gn_6_104161 Lactuca sativa
Lsat_1_v5_gn_9_73401 Lactuca sativa
Manes.01G089600 Manihot esculenta
Manes.02G045700 Manihot esculenta
Manes.02G150600 Manihot esculenta
Manes.13G095700 Manihot esculenta
Manes.18G065500 Manihot esculenta
Mapoly0008s0188 Marchantia polymorpha
MBI02_g27970_MAGBIO Magnolia biondii
MBI05_g10090_MAGBIO Magnolia biondii
MBI05_g44263_MAGBIO Magnolia biondii
MCO11G486 Micromonas commoda
MD00G1037100 Malus domestica
MD01G1033700 Malus domestica
MD01G1033800 Malus domestica
MD01G1033900 Malus domestica
MD04G1055100 Malus domestica
MD04G1198600 Malus domestica
MD04G1198700 Malus domestica
MD05G1042700 Malus domestica
MD06G1046700 Malus domestica
MD06G1151000 Malus domestica
MD07G1214500 Malus domestica
MD08G1186700 Malus domestica
MD15G1372600 Malus domestica
Medtr2g009080 Medicago truncatula
Medtr5g064500 Medicago truncatula
MELO3C007744.2 Cucumis melo
MELO3C011037.2 Cucumis melo
MELO3C014175.2 Cucumis melo
MELO3C018622.2 Cucumis melo
Migut.L00148 Erythranthe guttata
Migut.N01080 Erythranthe guttata
Migut.N02885 Erythranthe guttata
MSTRG.15718 Avicennia marina
MSTRG.24980 Avicennia marina
MSTRG.27807 Avicennia marina
MSTRG.3767 Avicennia marina
Nitab4.5_0000097g0190 Nicotiana tabacum
Nitab4.5_0000743g0100 Nicotiana tabacum
Nitab4.5_0000786g0160 Nicotiana tabacum
Nitab4.5_0002401g0040 Nicotiana tabacum
Nitab4.5_0006196g0010 Nicotiana tabacum
Nitab4.5_0008909g0020 Nicotiana tabacum
Nitab4.5_0021029g0010 Nicotiana tabacum
Nn1g00746 Nelumbo nucifera
Nn1g00747 Nelumbo nucifera
Nn1g05421 Nelumbo nucifera
Nn5g30033 Nelumbo nucifera
Nn6g33752 Nelumbo nucifera
Oeu007984.1 Olea europaea
Oeu027062.1 Olea europaea
Oeu033048.1 Olea europaea
Oeu033832.1 Olea europaea
Oeu035834.1 Olea europaea
Oeu042411.1 Olea europaea
Oeu056624.1 Olea europaea
Os03g0389700 Oryza sativa ssp. japonica
Os07g0622200 Oryza sativa ssp. japonica
Os08g0484500 Oryza sativa ssp. japonica
Os10g0564400 Oryza sativa ssp. japonica
Peaxi162Scf00030g01715 Petunia axillaris
Peaxi162Scf00381g00086 Petunia axillaris
Peaxi162Scf01060g00145 Petunia axillaris
PGR004G1589 Punica granatum
PGR031G0101 Punica granatum
PGR042G2538 Punica granatum
PGR042G3806 Punica granatum
PGSC0003DMG400012549 Solanum tuberosum
PGSC0003DMG400030812 Solanum tuberosum
PGSC0003DMG401016226 Solanum tuberosum
PGSC0003DMG402016226 Solanum tuberosum
Phvul.006G205200 Phaseolus vulgaris
Phvul.008G176200 Phaseolus vulgaris
Phvul.009G032300 Phaseolus vulgaris
Potri.001G150500 Populus trichocarpa
Potri.002G099200 Populus trichocarpa
Potri.005G073300 Populus trichocarpa
Potri.005G162800 Populus trichocarpa
Potri.007G095700 Populus trichocarpa
Pp3c11_5740 Physcomitrium patens
Pp3c14_14170 Physcomitrium patens
Pp3c1_31930 Physcomitrium patens
Pp3c1_6640 Physcomitrium patens
Pp3c2_29800 Physcomitrium patens
Pp3c2_35740 Physcomitrium patens
Pp3c7_22740 Physcomitrium patens
PRCOL_00000796 Prasinoderma coloniale
PRCOL_00001127 Prasinoderma coloniale
Prupe.1G521200 Prunus persica
Prupe.5G055000 Prunus persica
Prupe.6G191200 Prunus persica
Prupe.8G064200 Prunus persica
Psat1g216320 Pisum sativum
Psat2g070680 Pisum sativum
Psat7g006880 Pisum sativum
PSO210G4476 Papaver somniferum
PSO447G0123 Papaver somniferum
PSO541G1512 Papaver somniferum
PSO675G0172 Papaver somniferum
PSO732G0214 Papaver somniferum
PSO781G0016 Papaver somniferum
QL06p048450 Quercus lobata
QL11p018812 Quercus lobata
QL11p022600 Quercus lobata
QL12p008630 Quercus lobata
QL12p037384 Quercus lobata
QL93p0281_0003 Quercus lobata
RcHm_v2.0_Chr2g0112721 Rosa chinensis
RcHm_v2.0_Chr2g0119461 Rosa chinensis
RcHm_v2.0_Chr4g0406791 Rosa chinensis
RcHm_v2.0_Chr5g0039991 Rosa chinensis
RcHm_v2.0_Chr7g0205781 Rosa chinensis
RcHm_v2.0_Chr7g0243371 Rosa chinensis
Rhsim05G0104300 Rhododendron simsii
Rhsim05G0104400 Rhododendron simsii
Rhsim06G0079300 Rhododendron simsii
Rhsim07G0204200 Rhododendron simsii
Rhsim08G0012800 Rhododendron simsii
Rhsim08G0012900 Rhododendron simsii
Sabra01G0120300 Salix brachista
Sabra02G0077900 Salix brachista
Sabra05G0059900 Salix brachista
Sabra05G0122900 Salix brachista
Sabra07G0078800 Salix brachista
SalBow5G4573 Salvia bowleyana
SalBow6G6036 Salvia bowleyana
Sc08g0003670 Simmondsia chinensis
Sc23g0000310 Simmondsia chinensis
Sc26g0000150 Simmondsia chinensis
Sc26g0000160 Simmondsia chinensis
Sed0006287 Sechium edule
Sed0007588 Sechium edule
Sed0017487 Sechium edule
Sed0025880 Sechium edule
Sed0026208 Sechium edule
SEGI_00388 Sequoiadendron giganteum
SEGI_19731 Sequoiadendron giganteum
SEGI_20185 Sequoiadendron giganteum
SEGI_24026 Sequoiadendron giganteum
SEGI_27224 Sequoiadendron giganteum
SEGI_29440 Sequoiadendron giganteum
SGA_v2.0_scaffold115G32178 Striga asiatica
SGA_v2.0_scaffold28G11910 Striga asiatica
SGA_v2.0_scaffold335G49112 Striga asiatica
SGA_v2.0_scaffold83G26325 Striga asiatica
SGA_v2.0_scaffold84G26491 Striga asiatica
SHI20990 Sapria himalayana
SHI34218 Sapria himalayana
SMO143G0169 Selaginella moellendorffii
Solyc01g105380.1 Solanum lycopersicum
Solyc01g105383.1 Solanum lycopersicum
Solyc01g105420.4 Solanum lycopersicum
Solyc04g074480.3 Solanum lycopersicum
Solyc11g009080.2 Solanum lycopersicum
Sopen01g047910 Solanum pennellii
Sopen04g029490 Solanum pennellii
Sopen11g004850 Solanum pennellii
Sopen11g004860 Solanum pennellii
Sopen11g004870 Solanum pennellii
Sp1g19890 Schrenkiella parvula
Sp7g31250 Schrenkiella parvula
Sp7g35890 Schrenkiella parvula
TAR310G0001 Trochodendron aralioides
TAR381G0810 Trochodendron aralioides
TAR381G1564 Trochodendron aralioides
TAR624G1074 Trochodendron aralioides
TAR625G0237 Trochodendron aralioides
TAR633G1750 Trochodendron aralioides
THA.LOC104807679 Tarenaya hassleriana
THA.LOC104809720 Tarenaya hassleriana
THA.LOC104819502 Tarenaya hassleriana
THA.LOC104824788 Tarenaya hassleriana
Thecc.01G097600 Theobroma cacao
Thecc.01G097700 Theobroma cacao
Thecc.01G142800 Theobroma cacao
Thecc.02G134800 Theobroma cacao
Thecc.03G239400 Theobroma cacao
Thecc.03G239500 Theobroma cacao
Thecc.08G103900 Theobroma cacao
Thhalv10007380m.g Eutrema salsugineum
Thhalv10024923m.g Eutrema salsugineum
Thhalv10024959m.g Eutrema salsugineum
TPR.G23239 Trifolium pratense
TPR.G25222 Trifolium pratense
TWI12G0991 Tripterygium wilfordii
TWI36G1122 Tripterygium wilfordii
TWI59G1093 Tripterygium wilfordii
unitig_0.g1900 Utricularia gibba
unitig_578.g16191 Utricularia gibba
unitig_747.g21241 Utricularia gibba
unitig_747.g21242 Utricularia gibba
unitig_8.g4841 Utricularia gibba
vmacro04721 Vaccinium macrocarpon
vmacro12966 Vaccinium macrocarpon
vmacro18585 Vaccinium macrocarpon
vmacro19942 Vaccinium macrocarpon
vmacro21246 Vaccinium macrocarpon
VMungo0540G0708 Vigna mungo
VMungo0647G1959 Vigna mungo
VMungo1309G0578 Vigna mungo
Zm00001eb018960 Zea mays
Zm00001eb026910 Zea mays
Zm00001eb040990 Zea mays
Zm00001eb109620 Zea mays
Zm00001eb164190 Zea mays
Zm00001eb199100 Zea mays
Zm00001eb218070 Zea mays
Zm00001eb284030 Zea mays
Zm00001eb309680 Zea mays
Zm00001eb327800 Zea mays
Zm00001eb367090 Zea mays

User provided reference genes

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