Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p03060 Brassica napus
A03p07180 Brassica napus
A04p12010 Brassica napus
A04p15570 Brassica napus
A06p39920 Brassica napus
A07p19960 Brassica napus
A09p39960 Brassica napus
A10p23440 Brassica napus
Aa31LG11G14080 Aethionema arabicum
Aa31LG2G3940 Aethionema arabicum
Aa31LG5G12600 Aethionema arabicum
Aa31LG7G8520 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.636 Anthoceros agrestis
Actinidia01985 Actinidia chinensis
Actinidia03067 Actinidia chinensis
Actinidia04840 Actinidia chinensis
Actinidia32295 Actinidia chinensis
Ah.02g126460 Amaranthus hybridus
Ah.03g139050 Amaranthus hybridus
Ah.10g032050 Amaranthus hybridus
Ah.10g032060 Amaranthus hybridus
AL1G39160 Arabidopsis lyrata
AL3G11260 Arabidopsis lyrata
AL5G19440 Arabidopsis lyrata
AL6G26340 Arabidopsis lyrata
AL7G51160 Arabidopsis lyrata
Aqoxy1G02528 Aquilegia oxysepala
Aqoxy1G02529 Aquilegia oxysepala
Aqoxy3G03586 Aquilegia oxysepala
Aqoxy6G00701 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0RJM1Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.31F6F0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4PW9PW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F33TLL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GNTH39 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HGTY5Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IC58FC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P7D082 Arachis hypogaea
AT1G26570 Arabidopsis thaliana
AT3G01010 Arabidopsis thaliana
AT3G29360 Arabidopsis thaliana
AT5G15490 Arabidopsis thaliana
AT5G39320 Arabidopsis thaliana
ATR0064G109 Amborella trichopoda
ATR0582G061 Amborella trichopoda
ATR0582G178 Amborella trichopoda
Atru.chr8.413 Acer truncatum
Atru.chr9.404 Acer truncatum
AUR62007936 Chenopodium quinoa
AUR62008502 Chenopodium quinoa
AUR62018169 Chenopodium quinoa
AUR62021590 Chenopodium quinoa
AUR62024968 Chenopodium quinoa
AUR62024970 Chenopodium quinoa
AUR62042429 Chenopodium quinoa
BcaB01g05048 Brassica carinata
BcaB01g05049 Brassica carinata
BcaB02g07986 Brassica carinata
BcaB06g27287 Brassica carinata
BcaB06g27288 Brassica carinata
BcaC02g09689 Brassica carinata
BcaC06g30866 Brassica carinata
BcaC06g30867 Brassica carinata
BcaC06g30869 Brassica carinata
BcaC08g44414 Brassica carinata
BcaC08g44415 Brassica carinata
BcaNung06759 Brassica carinata
BolC2t06705H Brassica oleracea
BolC3t13314H Brassica oleracea
BolC4t26148H Brassica oleracea
BolC5t31181H Brassica oleracea
BolC6t37064H Brassica oleracea
BolC7t44346H Brassica oleracea
BolC9t59006H Brassica oleracea
BraA02t05276Z Brassica rapa
BraA03t10040Z Brassica rapa
BraA04t16866Z Brassica rapa
BraA04t17192Z Brassica rapa
BraA06t26907Z Brassica rapa
BraA07t29695Z Brassica rapa
BraA09t39494Z Brassica rapa
BraA10t44411Z Brassica rapa
C02p07740 Brassica napus
C03p08170 Brassica napus
C04p45660 Brassica napus
C04p49840 Brassica napus
C05p24470 Brassica napus
C06p18510 Brassica napus
C07p38240 Brassica napus
C09p61680 Brassica napus
CAN.G155.8 Capsicum annuum
CAN.G155.9 Capsicum annuum
CAN.G206.207 Capsicum annuum
CAN.G206.211 Capsicum annuum
CAN.G479.24 Capsicum annuum
CAN.G587.36 Capsicum annuum
CAN.G834.12 Capsicum annuum
CAN.G8687.1 Capsicum annuum
CAN.G979.8 Capsicum annuum
CANSAT64G1615 Cannabis sativa
CARHR025400 Cardamine hirsuta
CARHR154070 Cardamine hirsuta
CARHR197820 Cardamine hirsuta
CARHR263090 Cardamine hirsuta
Carub.0001s2447 Capsella rubella
Carub.0003s0117 Capsella rubella
Carub.0005s0807 Capsella rubella
Carub.0006s1365 Capsella rubella
Carub.0007s3661 Capsella rubella
Ca_04298_v3 Cicer arietinum L.
Ca_04936_v3 Cicer arietinum L.
Ca_06820_v3 Cicer arietinum L.
Ca_18808_v3 Cicer arietinum L.
CBR_g46643 Chara braunii
Cc00_g28540 Coffea canephora
Cc07_g03990 Coffea canephora
Cc11_g12180 Coffea canephora
CDE02G1096 Ceratophyllum demersum
CDE02G2781 Ceratophyllum demersum
CDE04G0026 Ceratophyllum demersum
CDE05G2419 Ceratophyllum demersum
CDE07G1337 Ceratophyllum demersum
Cfa007643 Carpinus fangiana
Cfa008893 Carpinus fangiana
Cfa019309 Carpinus fangiana
Cfa027347 Carpinus fangiana
Ciclev10011622m.g Citrus clementina
Ciclev10019935m.g Citrus clementina
Ciclev10031390m.g Citrus clementina
CiPaw.03G090400 Carya illinoinensis
CiPaw.04G057400 Carya illinoinensis
CiPaw.05G126500 Carya illinoinensis
CiPaw.06G091300 Carya illinoinensis
CiPaw.11G050800 Carya illinoinensis
ClCG00G006450 Citrullus lanatus
ClCG06G015760 Citrullus lanatus
ClCG07G007290 Citrullus lanatus
ClCG08G010280 Citrullus lanatus
COL.COLO4_07297 Corchorus olitorius
COL.COLO4_07730 Corchorus olitorius
COL.COLO4_12092 Corchorus olitorius
COL.COLO4_21396 Corchorus olitorius
COL.COLO4_22214 Corchorus olitorius
COL.COLO4_27909 Corchorus olitorius
Cpa.g.sc1.107 Carica papaya
Cpa.g.sc14.161 Carica papaya
Cpa.g.sc94.20 Carica papaya
Cre06.g278185 Chlamydomonas reinhardtii
Cre07.g357200 Chlamydomonas reinhardtii
Cre12.g532450 Chlamydomonas reinhardtii
CsaV3_1G002790 Cucumis sativus L.
CsaV3_4G008770 Cucumis sativus L.
CsaV3_6G032490 Cucumis sativus L.
CsaV3_6G032500 Cucumis sativus L.
CsaV3_6G033570 Cucumis sativus L.
CSS0029021 Camellia sinensis var. sinensis
CSS0031309 Camellia sinensis var. sinensis
CSS0036320 Camellia sinensis var. sinensis
CSS0037152 Camellia sinensis var. sinensis
CSS0042682 Camellia sinensis var. sinensis
DCAR_011048 Daucus carota
DCAR_025416 Daucus carota
DCAR_026011 Daucus carota
DCAR_027460 Daucus carota
Dinv10692 Davidia involucrata
Dinv16717 Davidia involucrata
Dinv33819 Davidia involucrata
Dinv34084 Davidia involucrata
Dinv34957 Davidia involucrata
Dinv38795 Davidia involucrata
Duzib084G0593 Durio zibethinus
Duzib187G0603 Durio zibethinus
Duzib251G0181 Durio zibethinus
Duzib264G0389 Durio zibethinus
Duzib268G1399 Durio zibethinus
ECA232G2810 Erigeron canadensis
ECA232G4739 Erigeron canadensis
ECA233G2590 Erigeron canadensis
ECA238G0547 Erigeron canadensis
ECA246G2802 Erigeron canadensis
ECA246G3178 Erigeron canadensis
ECA247G0326 Erigeron canadensis
EL10Ac4g10014 Beta vulgaris
EL10Ac5g11105 Beta vulgaris
EL10Ac7g16489 Beta vulgaris
EL10Ac9g22851 Beta vulgaris
Eucgr.J01372 Eucalyptus grandis
Eucgr.K02506 Eucalyptus grandis
FAN01G2676 Fragaria x ananassa
FAN03G1050 Fragaria x ananassa
FAN06G3047 Fragaria x ananassa
FAN07G1628 Fragaria x ananassa
FAN08G1463 Fragaria x ananassa
FAN10G3907 Fragaria x ananassa
FAN12G3904 Fragaria x ananassa
FAN13G2431 Fragaria x ananassa
FAN17G1604 Fragaria x ananassa
FAN18G1556 Fragaria x ananassa
FAN21G0252 Fragaria x ananassa
FAN21G2335 Fragaria x ananassa
FAN21G2496 Fragaria x ananassa
FAN21G3223 Fragaria x ananassa
FAN22G1180 Fragaria x ananassa
FvH4_3g02200 Fragaria vesca
FvH4_3g02390 Fragaria vesca
FvH4_4g30330 Fragaria vesca
FvH4_5g14230 Fragaria vesca
FvH4_7g08190 Fragaria vesca
Glyma.01G057100 Glycine max
Glyma.02G115400 Glycine max
Glyma.05G022600 Glycine max
Glyma.08G243000 Glycine max
Glyma.13G057700 Glycine max
Glyma.17G077000 Glycine max
Glyma.18G265100 Glycine max
Glyma.19G028500 Glycine max
Gohir.A03G103800 Gossypium hirsutum
Gohir.A07G069300 Gossypium hirsutum
Gohir.A11G072100 Gossypium hirsutum
Gohir.A12G087300 Gossypium hirsutum
Gohir.A12G161900 Gossypium hirsutum
Gohir.A13G081100 Gossypium hirsutum
Gohir.D02G129000 Gossypium hirsutum
Gohir.D07G073700 Gossypium hirsutum
Gohir.D11G076100 Gossypium hirsutum
Gohir.D12G085500 Gossypium hirsutum
Gohir.D12G165200 Gossypium hirsutum
Gohir.D12G232700 Gossypium hirsutum
Gohir.D13G080800 Gossypium hirsutum
Gorai.001G077900 Gossypium raimondii
Gorai.005G144700 Gossypium raimondii
Gorai.007G081800 Gossypium raimondii
Gorai.008G095900 Gossypium raimondii
Gorai.008G177900 Gossypium raimondii
Gorai.013G092600 Gossypium raimondii
GSVIVG01007910001 Vitis vinifera
GSVIVG01011507001 Vitis vinifera
GSVIVG01012198001 Vitis vinifera
HanXRQChr02g0042541 Helianthus annuus
HanXRQChr04g0103811 Helianthus annuus
HanXRQChr05g0135871 Helianthus annuus
HanXRQChr14g0448771 Helianthus annuus
HanXRQChr15g0473051 Helianthus annuus
HanXRQChr17g0551811 Helianthus annuus
Haze_07692 Corylus avellana
Haze_14451 Corylus avellana
Haze_27158 Corylus avellana
HPP92_000930 Vanilla planifolia
HPP92_012300 Vanilla planifolia
HPP92_014052 Vanilla planifolia
Hund09870 Selenicereus undatus
Lalb_Chr04g0255721 Lupinus albus
Lalb_Chr05g0220011 Lupinus albus
Lalb_Chr06g0175041 Lupinus albus
Lalb_Chr10g0098691 Lupinus albus
Lalb_Chr12g0197081 Lupinus albus
Lalb_Chr16g0385581 Lupinus albus
Lalb_Chr17g0341131 Lupinus albus
Lalb_Chr21g0318431 Lupinus albus
Lj1g0018471 Lotus japonicus
Lj2g0016006 Lotus japonicus
Lj2g0016228 Lotus japonicus
Lj4g0024140 Lotus japonicus
Lj4P117T20 Lonicera japonica
Lj9P470T41 Lonicera japonica
Lju41C4T16 Lonicera japonica
Lsat_1_v5_gn_1_13620 Lactuca sativa
Lsat_1_v5_gn_2_87700 Lactuca sativa
Lsat_1_v5_gn_3_56060 Lactuca sativa
Lsat_1_v5_gn_4_110641 Lactuca sativa
Lsat_1_v5_gn_4_170480 Lactuca sativa
Manes.01G097900 Manihot esculenta
Manes.05G108750 Manihot esculenta
Manes.06G086900 Manihot esculenta
Manes.14G084200 Manihot esculenta
Mapoly0108s0005 Marchantia polymorpha
Mapoly0108s0006 Marchantia polymorpha
Mapoly0110s0053 Marchantia polymorpha
Mapoly1179s0001 Marchantia polymorpha
MBI07_g11057_MAGBIO Magnolia biondii
MBI16_g20807_MAGBIO Magnolia biondii
MBI19_g19852_MAGBIO Magnolia biondii
MCO16G201 Micromonas commoda
MCO17G043 Micromonas commoda
MD00G1075000 Malus domestica
MD06G1200200 Malus domestica
MD13G1064400 Malus domestica
MD14G1209700 Malus domestica
MD15G1316900 Malus domestica
MD16G1062900 Malus domestica
Medtr4g082990 Medicago truncatula
Medtr4g109360 Medicago truncatula
Medtr5g043970 Medicago truncatula
Medtr6g014530 Medicago truncatula
Medtr6g014820 Medicago truncatula
Medtr6g014840 Medicago truncatula
Medtr6g014850 Medicago truncatula
Medtr6g014870 Medicago truncatula
Medtr6g014890 Medicago truncatula
Medtr6g014905 Medicago truncatula
Medtr6g014930 Medicago truncatula
Medtr6g014980 Medicago truncatula
Medtr6g033430 Medicago truncatula
Medtr7g012950 Medicago truncatula
MELO3C011431.2 Cucumis melo
MELO3C016068.2 Cucumis melo
MELO3C017213.2 Cucumis melo
Migut.H00642 Erythranthe guttata
Migut.K01285 Erythranthe guttata
MSTRG.22973 Avicennia marina
MSTRG.23893 Avicennia marina
Nitab4.5_0000154g0320 Nicotiana tabacum
Nitab4.5_0000212g0180 Nicotiana tabacum
Nitab4.5_0000565g0160 Nicotiana tabacum
Nitab4.5_0001410g0150 Nicotiana tabacum
Nitab4.5_0004284g0010 Nicotiana tabacum
Nitab4.5_0007854g0010 Nicotiana tabacum
Nitab4.5_0007954g0020 Nicotiana tabacum
Nitab4.5_0008213g0050 Nicotiana tabacum
Nitab4.5_0015016g0010 Nicotiana tabacum
Nn2g13469 Nelumbo nucifera
Nn3g17404 Nelumbo nucifera
Nn3g17405 Nelumbo nucifera
Nn4g23381 Nelumbo nucifera
Nn6g32345 Nelumbo nucifera
Oeu007057.5 Olea europaea
Oeu010243.1 Olea europaea
Oeu033390.1 Olea europaea
Oeu039121.1 Olea europaea
Oeu062153.1 Olea europaea
Oeu062486.1 Olea europaea
Os03g0147150 Oryza sativa ssp. japonica
Os03g0425600 Oryza sativa ssp. japonica
Os03g0604200 Oryza sativa ssp. japonica
Os03g0757900 Oryza sativa ssp. japonica
Os04g0581600 Oryza sativa ssp. japonica
Os12g0443500 Oryza sativa ssp. japonica
Os12g0443600 Oryza sativa ssp. japonica
Peaxi162Scf00013g00511 Petunia axillaris
Peaxi162Scf00166g00617 Petunia axillaris
Peaxi162Scf00451g00035 Petunia axillaris
Peaxi162Scf00629g00043 Petunia axillaris
PGR044G1102 Punica granatum
PGR083G1559 Punica granatum
PGR083G2111 Punica granatum
PGSC0003DMG400001448 Solanum tuberosum
PGSC0003DMG400025137 Solanum tuberosum
PGSC0003DMG400026856 Solanum tuberosum
PGSC0003DMG400033107 Solanum tuberosum
PGSC0003DMG400036966 Solanum tuberosum
Phvul.002G102900 Phaseolus vulgaris
Phvul.003G043700 Phaseolus vulgaris
Phvul.004G034500 Phaseolus vulgaris
Phvul.008G034900 Phaseolus vulgaris
Potri.004G118600 Populus trichocarpa
Potri.008G094300 Populus trichocarpa
Potri.010G159800 Populus trichocarpa
Potri.017G092000 Populus trichocarpa
Pp3c20_1250 Physcomitrium patens
Pp3c23_18200 Physcomitrium patens
Pp3c24_18230 Physcomitrium patens
Pp3c8_22500 Physcomitrium patens
PRCOL_00004043 Prasinoderma coloniale
PRCOL_00006576 Prasinoderma coloniale
Prupe.1G284300 Prunus persica
Prupe.3G257300 Prunus persica
Prupe.5G202800 Prunus persica
Prupe.7G028000 Prunus persica
Psat0s2402g0080 Pisum sativum
Psat2g129040 Pisum sativum
Psat3g077320 Pisum sativum
Psat4g048280 Pisum sativum
Psat5g191720 Pisum sativum
PSO017G3717 Papaver somniferum
PSO063G5190 Papaver somniferum
PSO409G0002 Papaver somniferum
PSO478G1406 Papaver somniferum
PSO541G3705 Papaver somniferum
PSO675G9079 Papaver somniferum
QL02p039205 Quercus lobata
QL03p071239 Quercus lobata
QL10p018853 Quercus lobata
RcHm_v2.0_Chr1g0340961 Rosa chinensis
RcHm_v2.0_Chr4g0438621 Rosa chinensis
RcHm_v2.0_Chr5g0001321 Rosa chinensis
RcHm_v2.0_Chr5g0001331 Rosa chinensis
RcHm_v2.0_Chr5g0003221 Rosa chinensis
RcHm_v2.0_Chr5g0003231 Rosa chinensis
RcHm_v2.0_Chr7g0182711 Rosa chinensis
Rhsim08G0148200 Rhododendron simsii
Rhsim10G0044100 Rhododendron simsii
Rhsim12G0076200 Rhododendron simsii
Sabra04G0068500 Salix brachista
Sabra08G0070800 Salix brachista
Sabra10G0121500 Salix brachista
Sabra17G0081000 Salix brachista
SalBow1G0817 Salvia bowleyana
SalBow1G4912 Salvia bowleyana
SalBow5G4084 Salvia bowleyana
SalBow5G5109 Salvia bowleyana
Sc04g0007680 Simmondsia chinensis
Sc11g0004690 Simmondsia chinensis
Sc14g0006200 Simmondsia chinensis
Sc14g0008010 Simmondsia chinensis
Sed0002994 Sechium edule
Sed0022468 Sechium edule
SEGI_14741 Sequoiadendron giganteum
SEGI_21770 Sequoiadendron giganteum
SEGI_29637 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37088 Striga asiatica
SGA_v2.0_scaffold4G02402 Striga asiatica
SGA_v2.0_scaffold52G19177 Striga asiatica
SHI25781 Sapria himalayana
SMO351G0079 Selaginella moellendorffii
Solyc02g067080.4 Solanum lycopersicum
Solyc02g088690.4 Solanum lycopersicum
Solyc03g065350.3 Solanum lycopersicum
Solyc03g115380.3 Solanum lycopersicum
Solyc06g069550.1 Solanum lycopersicum
Sopen02g016270 Solanum pennellii
Sopen02g033400 Solanum pennellii
Sopen03g034390 Solanum pennellii
Sopen06g026840 Solanum pennellii
Sp1g22210 Schrenkiella parvula
Sp2g17950 Schrenkiella parvula
Sp3g01120 Schrenkiella parvula
Sp6g28610 Schrenkiella parvula
Sp7g02670 Schrenkiella parvula
TAR371G0412 Trochodendron aralioides
TAR374G1012 Trochodendron aralioides
TAR374G1146 Trochodendron aralioides
TAR374G1671 Trochodendron aralioides
TAR622G0858 Trochodendron aralioides
TAR622G1031 Trochodendron aralioides
THA.LOC104805508 Tarenaya hassleriana
THA.LOC104809171 Tarenaya hassleriana
THA.LOC104818338 Tarenaya hassleriana
THA.LOC104821007 Tarenaya hassleriana
THA.LOC104822019 Tarenaya hassleriana
THA.LOC104823891 Tarenaya hassleriana
Thecc.02G333800 Theobroma cacao
Thecc.03G098000 Theobroma cacao
Thecc.04G092500 Theobroma cacao
Thhalv10004110m.g Eutrema salsugineum
Thhalv10010007m.g Eutrema salsugineum
Thhalv10013414m.g Eutrema salsugineum
Thhalv10027800m.g Eutrema salsugineum
TPR.G10014 Trifolium pratense
TPR.G1998 Trifolium pratense
TPR.G24465 Trifolium pratense
TPR.G33420 Trifolium pratense
TPR.G34032 Trifolium pratense
TWI32G0851 Tripterygium wilfordii
TWI34G0440 Tripterygium wilfordii
TWI34G1717 Tripterygium wilfordii
TWI60G0937 Tripterygium wilfordii
TWI60G1214 Tripterygium wilfordii
unitig_32.g10751 Utricularia gibba
unitig_32.g11773 Utricularia gibba
unitig_52.g17644 Utricularia gibba
unitig_62.g23376 Utricularia gibba
unitig_62.g23377 Utricularia gibba
unitig_748.g8429 Utricularia gibba
vmacro01324 Vaccinium macrocarpon
VMungo0251G2053 Vigna mungo
VMungo0464G1246 Vigna mungo
VMungo1215G0323 Vigna mungo
VMungo1215G1780 Vigna mungo
VMungo1383G2617 Vigna mungo
Zm00001eb050080 Zea mays
Zm00001eb057810 Zea mays
Zm00001eb214560 Zea mays

User provided reference genes

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