Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 0.0e+00 1105.5 553 100.0
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.8e-292 1006.5 500 100.0
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.8e-219 766.1 451 84.5
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.2e-218 763.5 448 82.4
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 7.5e-218 760.8 440 84.3
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.2e-217 759.2 454 81.9
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.0e-211 738.4 451 82.3
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 9.2e-208 727.2 454 78.4
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 2.0e-207 726.1 442 79.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 5.9e-207 724.5 430 81.6
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 7.8e-207 724.2 444 79.5
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.3e-206 723.4 441 78.9
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 2.9e-206 722.2 442 79.2
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.9e-206 721.8 441 78.7
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.9e-205 719.5 444 79.3
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 4.3e-205 718.4 444 79.5
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.3e-205 717.6 441 78.2
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 9.5e-205 717.2 455 78.2
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.1e-204 716.1 441 78.0
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.1e-204 716.1 441 78.0
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.0e-203 713.8 453 77.3
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.4e-203 713.4 440 79.5
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 2.3e-203 712.6 456 77.4
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.3e-203 712.6 444 78.4
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.0e-203 711.8 451 77.6
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 8.9e-203 710.7 442 77.8
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.5e-202 709.9 442 77.6
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.5e-202 709.9 448 76.8
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.5e-202 709.9 443 78.8
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.0e-202 709.5 442 77.8
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 3.4e-202 708.8 444 77.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 4.4e-202 708.4 440 78.9
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.3e-201 706.8 440 78.0
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.2e-201 706.1 441 78.0
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 6.4e-201 704.5 442 76.9
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 8.3e-201 704.1 442 77.8
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.4e-200 703.4 456 74.8
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.2e-200 702.2 434 78.3
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 9.2e-200 700.7 442 77.1
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.9e-198 695.3 431 77.3
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.9e-198 695.3 431 77.3
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 5.0e-198 694.9 443 75.6
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 5.0e-198 694.9 433 76.9
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.1e-197 693.7 440 75.2
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 3.3e-197 692.2 443 75.2
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.3e-197 691.8 442 77.1
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 7.3e-197 691.0 428 79.9
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 9.5e-197 690.6 431 77.0
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.6e-196 689.9 431 76.6
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 2.1e-196 689.5 455 74.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 4.7e-196 688.3 441 74.8
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.1e-195 687.2 442 75.1
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.8e-195 686.4 433 78.3
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.8e-195 686.4 422 77.7
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 3.1e-195 685.6 437 76.4
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.2e-194 683.7 444 75.0
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.2e-194 683.7 456 75.7
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.2e-194 683.7 442 75.3
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.5e-194 683.3 437 77.6
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 2.6e-194 682.6 440 75.5
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 4.4e-194 681.8 434 75.3
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 4.4e-194 681.8 441 75.5
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 5.8e-194 681.4 441 76.9
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 7.5e-194 681.0 443 75.6
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 9.8e-194 680.6 440 75.0
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 9.8e-194 680.6 440 75.0
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 1.7e-193 679.9 440 74.8
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 2.2e-193 679.5 440 74.8
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 2.2e-193 679.5 442 74.9
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.9e-193 679.1 440 74.8
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.7e-193 678.7 453 73.3
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 4.9e-193 678.3 442 75.3
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 4.9e-193 678.3 446 74.4
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 8.3e-193 677.6 447 75.6
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.9e-192 676.4 440 73.9
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.4e-192 676.0 455 72.7
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 7.1e-192 674.5 431 76.6
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.5e-191 672.2 445 73.9
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.7e-190 669.8 431 76.3
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 3.0e-190 669.1 424 75.9
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 6.6e-190 667.9 455 74.3
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 1.1e-189 667.2 425 76.5
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 4.3e-189 665.2 455 74.1
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 7.3e-189 664.5 456 73.2
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 8.1e-188 661.0 463 71.5
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.3e-187 659.4 456 73.0
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.1e-187 659.1 434 73.5
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.0e-186 656.4 411 76.6
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.4e-186 655.6 437 73.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 9.9e-186 654.1 443 72.5
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 9.9e-186 654.1 449 73.3
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.3e-185 653.7 456 72.6
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.9e-185 652.5 456 72.4
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.7e-185 652.1 434 73.0
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 7.1e-184 647.9 459 72.1
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.2e-183 647.1 456 71.5
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.6e-183 646.7 443 71.1
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.7e-183 646.0 441 71.7
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 6.0e-183 644.8 442 73.3
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.3e-182 642.9 569 61.2
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 5.1e-182 641.7 430 72.6
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.3e-181 639.0 435 71.7
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 6.8e-179 631.3 430 72.8
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.6e-178 629.4 421 72.4
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.4e-178 629.0 458 69.4
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-176 624.0 370 80.0
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 2.4e-176 622.9 448 69.0
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 2.4e-176 622.9 468 67.3
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 7.1e-176 621.3 452 68.6
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.3e-174 617.1 432 68.8
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.7e-174 616.7 453 71.7
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.1e-173 614.0 447 69.6
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 6.2e-172 608.2 429 71.1
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 8.1e-172 607.8 448 67.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 4.4e-170 602.1 465 65.8
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 2.9e-169 599.4 459 65.1
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.5e-165 586.3 446 66.4
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 6.9e-163 578.2 426 66.2
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.8e-161 572.4 443 64.3
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.1e-155 552.7 358 75.4
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.2e-153 546.6 403 65.8
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 4.9e-153 545.4 362 74.3
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.3e-148 530.8 444 60.4
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.8e-148 528.9 399 67.9
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 3.2e-144 516.2 362 68.5
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.7e-141 505.4 350 70.9
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.1e-139 499.2 433 59.4
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.6e-138 496.5 432 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 3.4e-138 496.1 423 61.0
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 8.5e-137 491.5 430 60.0
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 4.2e-136 489.2 434 56.7
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.1e-128 464.5 310 72.6
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.6e-125 453.4 454 54.8
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.9e-112 410.6 287 68.6
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.7e-105 387.5 336 61.0
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.6e-90 337.8 209 78.5
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.6e-90 337.8 255 65.1
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.1e-88 331.6 208 78.8
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 9.5e-88 328.6 247 67.6
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 4.3e-80 303.1 448 41.5
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.7e-76 291.2 197 71.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 7.6e-69 265.8 178 73.6
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-54 218.8 154 72.1
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 5.1e-49 199.9 136 71.3
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.8e-38 164.9 232 45.3
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 7.1e-35 152.9 150 54.0
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 8.7e-33 146.0 149 55.0
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 6.3e-23 113.2 61 91.8
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.1e-10 71.6 56 60.7


User provided reference genes

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