Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22706 Vaccinium macrocarpon HOM05D000905 ORTHO05D000749 2.3e-108 395.6 202 100.0
Rhsim03G0270200 Rhododendron simsii HOM05D000905 ORTHO05D000749 9.0e-20 101.3 152 46.7
GSVIVG01032268001 Vitis vinifera HOM05D000905 ORTHO05D000749 1.4e-17 94.0 57 75.4
Dinv12618 Davidia involucrata HOM05D000905 ORTHO05D000749 8.7e-15 84.7 57 70.2
Nn8g41147 Nelumbo nucifera HOM05D000905 ORTHO05D000749 1.1e-14 84.3 57 75.4
CiPaw.15G161600 Carya illinoinensis HOM05D000905 ORTHO05D000749 1.9e-14 83.6 79 51.9
Duzib150G0956 Durio zibethinus HOM05D000905 ORTHO05D000749 1.9e-14 83.6 69 60.9
Manes.02G223100 Manihot esculenta HOM05D000905 ORTHO05D000749 1.9e-14 83.6 58 72.4
QL11p008075 Quercus lobata HOM05D000905 ORTHO05D000749 2.5e-14 83.2 57 66.7
TAR626G0450 Trochodendron aralioides HOM05D000905 ORTHO05D000749 2.5e-14 83.2 57 71.9
Haze_19092 Corylus avellana HOM05D000905 ORTHO05D000749 5.7e-14 82.0 60 65.0
Prupe.1G063300 Prunus persica HOM05D000905 ORTHO05D000749 5.7e-14 82.0 85 48.2
Actinidia38531 Actinidia chinensis HOM05D000905 ORTHO05D000749 2.1e-13 80.1 57 70.2
Atru.chr7.1006 Acer truncatum HOM05D000905 ORTHO05D000749 2.8e-13 79.7 59 64.4
DCAR_014584 Daucus carota HOM05D000905 ORTHO05D000749 2.8e-13 79.7 57 66.7
Thecc.09G200900 Theobroma cacao HOM05D000905 ORTHO05D000749 6.2e-13 78.6 57 64.9
Gohir.A08G015700 Gossypium hirsutum HOM05D000905 ORTHO05D000749 8.2e-13 78.2 57 66.7
Gorai.004G022300 Gossypium raimondii HOM05D000905 ORTHO05D000749 8.2e-13 78.2 57 66.7
Potri.006G079500 Populus trichocarpa HOM05D000905 ORTHO05D000749 8.2e-13 78.2 58 62.1
Ciclev10007456m.g Citrus clementina HOM05D000905 ORTHO05D000749 1.1e-12 77.8 56 67.9
ECA234G3957 Erigeron canadensis HOM05D000905 ORTHO05D000749 1.4e-12 77.4 56 64.3
HanXRQChr12g0358601 Helianthus annuus HOM05D000905 ORTHO05D000749 1.4e-12 77.4 86 48.8
Atru.chr1.2068 Acer truncatum HOM05D000905 ORTHO05D000749 2.4e-12 76.6 61 60.7
Atru.chr5.2812 Acer truncatum HOM05D000905 ORTHO05D000749 2.4e-12 76.6 61 60.7
CSS0049685 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 2.4e-12 76.6 56 66.1
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 6.9e-12 75.1 61 59.0
PSO063G0310 Papaver somniferum HOM05D000905 ORTHO05D000749 6.9e-12 75.1 57 61.4
PSO170G0491 Papaver somniferum HOM05D000905 ORTHO05D000749 6.9e-12 75.1 57 61.4
Lsat_1_v5_gn_7_57441 Lactuca sativa HOM05D000905 ORTHO05D000749 1.2e-11 74.3 57 61.4
EL10Ac2g03625 Beta vulgaris HOM05D000905 ORTHO05D000749 1.5e-11 73.9 56 60.7
FAN17G0320 Fragaria x ananassa HOM05D000905 ORTHO05D000749 1.5e-11 73.9 92 42.4
MD13G1232000 Malus domestica HOM05D000905 ORTHO05D000749 1.5e-11 73.9 56 58.9
Aqoxy7G02654 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 4.5e-11 72.4 56 62.5
TWI34G1969 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 7.6e-11 71.6 57 63.2
CANSAT80G1045 Cannabis sativa HOM05D000905 ORTHO05D000749 1.0e-10 71.2 57 56.1
FvH4_4g05970 Fragaria vesca HOM05D000905 ORTHO05D000749 1.0e-10 71.2 90 41.1
MBI13_g33567_MAGBIO Magnolia biondii HOM05D000905 ORTHO05D000749 1.0e-10 71.2 84 48.8
Aa31sc130G70 Aethionema arabicum HOM05D000905 ORTHO05D000749 3.8e-10 69.3 72 48.6
FAN12G0461 Fragaria x ananassa HOM05D000905 ORTHO05D000749 3.8e-10 69.3 56 55.4
Peaxi162Scf00474g00525 Petunia axillaris HOM05D000905 ORTHO05D000749 3.8e-10 69.3 57 57.9
RcHm_v2.0_Chr4g0397171 Rosa chinensis HOM05D000905 ORTHO05D000749 3.8e-10 69.3 83 44.6
Cc06_g23870 Coffea canephora HOM05D000905 ORTHO05D000749 6.5e-10 68.6 57 52.6
FAN07G0268 Fragaria x ananassa HOM05D000905 ORTHO05D000749 8.4e-10 68.2 92 39.1
PGR044G0190 Punica granatum HOM05D000905 ORTHO05D000749 1.4e-09 67.4 57 50.9
AUR62027985 Chenopodium quinoa HOM05D000905 ORTHO05D000749 1.9e-09 67.0 56 53.6
Lsat_1_v5_gn_1_27861 Lactuca sativa HOM05D000905 ORTHO05D000749 1.9e-09 67.0 53 62.3
AUR62020728 Chenopodium quinoa HOM05D000905 ORTHO05D000749 2.5e-09 66.6 56 53.6
Lj2g0025756 Lotus japonicus HOM05D000905 ORTHO05D000749 3.2e-09 66.2 57 50.9
THA.LOC104815308 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 3.2e-09 66.2 57 56.1
Ah.10g032720 Amaranthus hybridus HOM05D000905 ORTHO05D000749 4.2e-09 65.9 56 51.8
MSTRG.19400 Avicennia marina HOM05D000905 ORTHO05D000749 4.2e-09 65.9 58 53.4
SalBow6G6089 Salvia bowleyana HOM05D000905 ORTHO05D000749 4.2e-09 65.9 70 47.1
MSTRG.5962 Avicennia marina HOM05D000905 ORTHO05D000749 5.5e-09 65.5 58 51.7
MD16G1236800 Malus domestica HOM05D000905 ORTHO05D000749 7.1e-09 65.1 72 45.8
Carub.0013s0002 Capsella rubella HOM05D000905 ORTHO05D000749 9.3e-09 64.7 57 56.1
AL3G44100 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 2.7e-08 63.2 57 54.4
AT2G07170 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 2.7e-08 63.2 57 54.4
Sc23g0004380 Simmondsia chinensis HOM05D000905 ORTHO05D000749 2.7e-08 63.2 60 46.7
Lj5A802T82 Lonicera japonica HOM05D000905 ORTHO05D000749 3.5e-08 62.8 66 47.0
Thhalv10024428m.g Eutrema salsugineum HOM05D000905 ORTHO05D000749 7.9e-08 61.6 57 52.6
Oeu000962.1 Olea europaea HOM05D000905 ORTHO05D000749 7.9e-08 61.6 56 53.6
Sed0005399 Sechium edule HOM05D000905 ORTHO05D000749 7.9e-08 61.6 57 54.4
BraA01t00909Z Brassica rapa HOM05D000905 ORTHO05D000749 1.0e-07 61.2 69 47.8
CsaV3_1G044050 Cucumis sativus L. HOM05D000905 ORTHO05D000749 1.0e-07 61.2 57 54.4
Migut.J00844 Erythranthe guttata HOM05D000905 ORTHO05D000749 1.0e-07 61.2 56 51.8
Lsat_1_v5_gn_5_80920 Lactuca sativa HOM05D000905 ORTHO05D000749 1.0e-07 61.2 46 69.6
BolC1t01092H Brassica oleracea HOM05D000905 ORTHO05D000749 1.3e-07 60.8 61 52.5
Glyma.01G001200 Glycine max HOM05D000905 ORTHO05D000749 1.3e-07 60.8 57 43.9
ClCG03G011840 Citrullus lanatus HOM05D000905 ORTHO05D000749 2.3e-07 60.1 60 51.7
ATR0626G346 Amborella trichopoda HOM05D000905 ORTHO05D000749 3.0e-07 59.7 74 47.3
CARHR104000 Cardamine hirsuta HOM05D000905 ORTHO05D000749 3.0e-07 59.7 57 50.9
Sp7g16580 Schrenkiella parvula HOM05D000905 ORTHO05D000749 3.0e-07 59.7 57 52.6
arahy.Tifrunner.gnm1.ann1.R9TITG Arachis hypogaea HOM05D000905 ORTHO05D000749 3.9e-07 59.3 57 43.9
arahy.Tifrunner.gnm1.ann1.SP0CEZ Arachis hypogaea HOM05D000905 ORTHO05D000749 3.9e-07 59.3 57 43.9
Sopen07g022270 Solanum pennellii HOM05D000905 ORTHO05D000749 5.1e-07 58.9 57 47.4
BcaC09g51628 Brassica carinata HOM05D000905 ORTHO05D000749 6.7e-07 58.5 57 52.6
BcaNung00077 Brassica carinata HOM05D000905 ORTHO05D000749 6.7e-07 58.5 57 52.6
Phvul.004G178400 Phaseolus vulgaris HOM05D000905 ORTHO05D000749 8.7e-07 58.2 57 43.9
arahy.Tifrunner.gnm1.ann1.TW4R6Z Arachis hypogaea HOM05D000905 ORTHO05D000749 1.5e-06 57.4 57 42.1
Eucgr.C00061 Eucalyptus grandis HOM05D000905 ORTHO05D000749 1.9e-06 57.0 56 48.2
Psat1g051600 Pisum sativum HOM05D000905 ORTHO05D000749 3.3e-06 56.2 55 47.3
arahy.Tifrunner.gnm1.ann1.8F9W5H Arachis hypogaea HOM05D000905 ORTHO05D000749 5.7e-06 55.5 57 40.4
Medtr6g093150 Medicago truncatula HOM05D000905 ORTHO05D000749 5.7e-06 55.5 57 45.6
Solyc07g042580.3 Solanum lycopersicum HOM05D000905 ORTHO05D000749 5.7e-06 55.5 57 45.6
TPR.G21353 Trifolium pratense HOM05D000905 ORTHO05D000749 9.7e-06 54.7 55 45.5


User provided reference genes

Program Settings