Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.1e-98 364.4 387 100.0
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.7e-30 136.7 68 100.0
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.2e-28 131.7 79 82.3
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.7e-25 119.8 80 80.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.7e-22 111.3 80 72.5
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.0e-15 87.8 81 61.7
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 5.7e-15 86.3 74 58.1
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 4.9e-14 83.2 84 60.7
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 4.9e-14 83.2 68 63.2
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 4.9e-14 83.2 73 60.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 4.9e-14 83.2 73 60.3
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 6.3e-14 82.8 83 56.6
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.8e-13 81.3 83 56.6
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.8e-13 81.3 82 57.3
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 9.2e-13 79.0 67 64.2
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.2e-12 78.6 78 56.4
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.6e-12 78.2 68 63.2
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.6e-12 78.2 80 58.8
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.0e-12 77.8 78 57.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.5e-12 77.0 80 55.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.5e-12 76.6 91 49.5
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 5.9e-12 76.3 70 58.6
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 5.9e-12 76.3 67 62.7
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 5.9e-12 76.3 82 53.7
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 7.8e-12 75.9 80 57.5
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.0e-11 75.5 72 56.9
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.3e-11 75.1 84 53.6
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.9e-11 73.9 76 55.3
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.9e-11 73.9 76 55.3
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-11 73.2 80 52.5
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-11 73.2 80 52.5
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 5.0e-11 73.2 80 55.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 6.6e-11 72.8 70 54.3
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 6.6e-11 72.8 81 53.1
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 6.6e-11 72.8 74 56.8
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 8.6e-11 72.4 64 65.6
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 8.6e-11 72.4 67 59.7
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 8.6e-11 72.4 67 59.7
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.5e-10 71.6 91 47.3
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-10 71.2 80 51.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.9e-10 71.2 68 58.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 3.3e-10 70.5 83 51.8
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.3e-10 70.5 73 54.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 3.3e-10 70.5 75 53.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 3.3e-10 70.5 75 53.3
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.3e-10 70.1 65 55.4
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 7.3e-10 69.3 78 48.7
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 7.3e-10 69.3 80 55.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 9.5e-10 68.9 69 56.5
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-09 68.6 80 50.0
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-09 68.6 80 50.0
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.2e-09 68.6 80 50.0
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 1.2e-09 68.6 82 51.2
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.2e-09 68.6 80 50.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.2e-09 68.6 64 60.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-09 68.2 82 51.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-09 68.2 82 51.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.6e-09 68.2 63 63.5
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.6e-09 68.2 80 50.0
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-09 68.2 67 55.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-09 67.8 81 48.1
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.8e-09 67.4 72 54.2
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 3.6e-09 67.0 80 47.5
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 3.6e-09 67.0 80 48.8
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 3.6e-09 67.0 80 47.5
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 3.6e-09 67.0 80 47.5
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.6e-09 67.0 80 52.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.6e-09 67.0 75 50.7
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.6e-09 67.0 63 63.5
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 4.7e-09 66.6 81 46.9
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 4.7e-09 66.6 82 52.4
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.1e-09 66.2 65 58.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 6.1e-09 66.2 82 50.0
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 8.0e-09 65.9 74 54.1
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 8.0e-09 65.9 82 50.0
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 8.0e-09 65.9 56 60.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 8.0e-09 65.9 64 57.8
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 8.0e-09 65.9 72 52.8
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.0e-08 65.5 62 58.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.0e-08 65.5 79 48.1
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.0e-08 65.5 80 50.0
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-08 64.7 80 46.2
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.8e-08 64.7 63 58.7
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.8e-08 64.7 62 61.3
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.3e-08 64.3 74 56.8
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.3e-08 64.3 72 50.0
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.3e-08 64.3 80 51.2
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.3e-08 64.3 77 45.5
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.1e-08 63.9 71 56.3
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.1e-08 63.9 92 46.7
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.1e-08 63.9 75 45.3
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 3.1e-08 63.9 63 60.3
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 4.0e-08 63.5 82 48.8
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 4.0e-08 63.5 82 48.8
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 4.0e-08 63.5 82 48.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 5.2e-08 63.2 80 51.2
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 5.2e-08 63.2 63 57.1
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.2e-08 63.2 77 48.1
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 6.8e-08 62.8 82 50.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 8.9e-08 62.4 76 48.7
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.2e-07 62.0 82 46.3
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.2e-07 62.0 66 54.5
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.2e-07 62.0 62 54.8
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.5e-07 61.6 63 55.6
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 2.0e-07 61.2 62 54.8
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.6e-07 60.8 82 46.3
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.6e-07 60.8 81 48.1
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 2.6e-07 60.8 76 51.3
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.6e-07 60.8 84 48.8
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.6e-07 60.8 82 51.2
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.6e-07 60.8 82 51.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.4e-07 60.5 57 54.4
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.4e-07 60.5 67 55.2
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 3.4e-07 60.5 76 50.0
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 3.4e-07 60.5 63 57.1
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.4e-07 60.5 83 47.0
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.4e-07 60.5 60 60.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 4.4e-07 60.1 81 48.1
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 4.4e-07 60.1 63 55.6
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 4.4e-07 60.1 63 55.6
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 4.4e-07 60.1 80 50.0
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 4.4e-07 60.1 70 54.3
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 4.4e-07 60.1 57 56.1
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 5.8e-07 59.7 66 48.5
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 7.5e-07 59.3 68 51.5
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 7.5e-07 59.3 81 43.2
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 7.5e-07 59.3 62 59.7
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 7.5e-07 59.3 82 47.6
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 9.8e-07 58.9 92 40.2
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.8e-07 58.9 62 50.0
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-06 58.2 57 59.6
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.7e-06 58.2 49 61.2
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.7e-06 58.2 68 50.0
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.7e-06 58.2 82 46.3
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.7e-06 58.2 70 52.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 2.2e-06 57.8 66 51.5
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.9e-06 57.4 64 50.0
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.9e-06 57.4 68 50.0
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 3.7e-06 57.0 73 49.3
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 3.7e-06 57.0 61 55.7
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.7e-06 57.0 77 45.5
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 3.7e-06 57.0 60 56.7
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.9e-06 56.6 68 50.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.9e-06 56.6 63 52.4
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 4.9e-06 56.6 63 52.4
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 4.9e-06 56.6 67 49.3
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 6.4e-06 56.2 78 46.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 8.3e-06 55.8 64 54.7
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 8.3e-06 55.8 58 56.9


User provided reference genes

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