Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.6e-120 434.5 207 100.0
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.4e-100 369.8 202 84.2
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.1e-84 317.0 205 76.1
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.2e-83 313.5 200 74.0
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 6.9e-76 287.7 201 68.7
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 3.4e-75 285.4 201 67.2
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.0e-74 281.6 197 66.5
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.0e-74 281.6 204 65.7
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.4e-73 280.0 224 62.5
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 3.2e-73 278.9 201 65.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.2e-73 278.9 203 67.0
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 3.2e-73 278.9 203 65.0
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.2e-73 278.5 198 66.7
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 7.2e-73 277.7 202 64.4
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 7.2e-73 277.7 203 68.0
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.1e-72 276.2 198 64.1
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.1e-72 276.2 210 62.9
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.7e-72 275.8 198 67.2
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 8.0e-72 274.2 184 70.7
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.3e-71 272.7 199 66.8
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 2.3e-71 272.7 231 61.0
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 6.7e-71 271.2 196 65.3
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 6.7e-71 271.2 200 64.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 8.8e-71 270.8 198 64.6
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.1e-70 270.4 196 66.8
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.1e-70 270.4 196 66.8
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.5e-70 270.0 208 61.5
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.0e-70 269.6 194 65.5
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 5.7e-70 268.1 208 61.5
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 7.4e-70 267.7 195 64.6
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.3e-69 266.9 208 61.1
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.3e-69 266.9 201 64.2
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.7e-69 266.5 204 63.7
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.7e-69 266.5 201 64.2
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 3.7e-69 265.4 204 63.7
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.1e-68 263.8 201 63.7
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.4e-68 263.5 199 63.3
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.8e-68 263.1 202 65.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 3.1e-68 262.3 203 63.1
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 5.3e-68 261.5 198 63.6
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 5.3e-68 261.5 210 61.9
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 7.0e-68 261.2 211 60.7
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 9.1e-68 260.8 200 61.0
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.6e-67 260.0 201 62.2
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-66 256.5 196 63.3
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.7e-66 256.5 195 63.6
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 3.8e-66 255.4 205 62.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 3.8e-66 255.4 202 61.9
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.8e-66 255.4 199 59.3
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.0e-66 255.0 197 62.9
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 5.0e-66 255.0 192 64.1
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.1e-65 253.8 200 61.0
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.9e-65 253.1 198 60.6
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 2.5e-65 252.7 208 58.2
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.2e-65 251.9 204 59.8
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 7.2e-65 251.1 240 54.6
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 9.4e-65 250.8 205 60.0
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.6e-64 250.0 197 60.4
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.7e-64 249.2 196 62.2
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.7e-64 249.2 196 58.2
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 4.7e-64 248.4 201 59.2
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 6.1e-64 248.1 196 61.7
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 6.1e-64 248.1 195 63.6
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 8.0e-64 247.7 195 60.5
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 4.0e-63 245.4 196 62.2
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.7e-63 244.6 196 61.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 8.8e-63 244.2 221 57.5
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 8.8e-63 244.2 196 60.2
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 8.8e-63 244.2 201 60.7
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.2e-62 243.8 190 63.7
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.2e-62 243.8 196 62.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.5e-62 243.4 196 61.2
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.5e-62 243.4 196 62.2
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.0e-62 243.0 196 61.7
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.0e-62 243.0 200 61.5
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 3.3e-62 242.3 198 59.6
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 9.7e-62 240.7 196 60.7
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 9.7e-62 240.7 196 61.2
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.3e-61 240.4 196 61.2
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.2e-61 239.6 196 60.7
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.8e-61 239.2 196 59.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 3.7e-61 238.8 196 61.2
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 3.7e-61 238.8 196 60.7
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.1e-60 237.3 201 59.2
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.4e-60 236.9 196 60.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.8e-60 236.5 197 61.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.1e-60 235.7 204 57.4
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.2e-59 233.8 204 56.9
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 2.0e-59 233.0 218 54.1
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.5e-59 231.9 159 68.6
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.0e-58 230.7 198 57.6
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.7e-58 229.9 189 58.7
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.2e-58 229.6 196 58.2
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.2e-58 229.6 201 57.2
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 8.5e-58 227.6 198 57.6
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 8.5e-58 227.6 190 60.5
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.1e-57 227.3 195 59.0
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.1e-57 227.3 194 57.7
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.9e-57 226.5 174 63.8
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 9.4e-57 224.2 204 53.4
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.2e-56 223.8 195 56.4
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.6e-56 223.4 203 56.7
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 2.1e-56 223.0 195 56.4
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.1e-56 223.0 190 57.4
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 3.6e-56 222.2 136 75.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.6e-56 222.2 226 52.2
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.4e-55 220.3 195 56.9
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.4e-55 220.3 195 56.9
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.8e-55 219.9 197 54.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 2.3e-55 219.5 208 53.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.0e-55 219.2 226 51.8
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.8e-55 218.0 204 52.5
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 8.8e-55 217.6 198 55.1
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.8e-55 217.6 202 53.5
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 8.8e-55 217.6 199 55.8
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.2e-54 217.2 198 56.1
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.2e-54 217.2 201 54.2
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.5e-54 216.9 198 54.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.5e-54 216.9 195 56.4
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.4e-54 215.3 201 55.2
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.7e-53 212.2 196 55.6
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.8e-53 211.8 195 55.9
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 7.0e-52 208.0 196 50.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.1e-52 207.6 199 51.8
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-51 206.8 196 53.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.7e-51 206.1 146 65.1
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 1.0e-50 204.1 244 45.5
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.5e-49 200.3 196 51.0
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.2e-49 198.7 195 49.2
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.2e-48 197.2 207 49.8
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.1e-48 196.4 202 49.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.8e-48 196.1 210 51.4
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 4.0e-47 192.2 193 48.7
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.2e-47 191.8 202 48.5
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 8.9e-47 191.0 197 50.8
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.0e-46 189.9 191 51.3
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.0e-46 189.9 194 52.1
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 2.6e-46 189.5 119 72.3
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 5.7e-46 188.3 216 46.3
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 7.5e-46 188.0 197 50.3
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 9.8e-46 187.6 193 52.3
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 2.2e-45 186.4 207 49.3
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 4.9e-45 185.3 204 48.0
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 6.3e-45 184.9 207 48.8
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-44 183.7 201 45.8
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.2e-43 180.6 190 50.0
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.7e-42 176.8 197 46.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.7e-42 176.8 197 46.7
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.5e-41 171.0 175 48.0
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.5e-38 163.7 236 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 5.8e-38 161.8 198 43.9
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-36 157.5 158 51.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.4e-36 156.4 188 47.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.6e-34 148.3 135 54.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 8.6e-34 147.9 137 52.6
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.8e-30 135.2 176 42.6
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.1e-28 131.0 113 54.9
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.1e-28 131.0 150 48.7
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-28 130.6 203 38.9
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 9.2e-28 127.9 204 39.2
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.5e-25 119.8 142 43.0
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.6e-24 115.9 144 43.1
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.4e-21 105.1 66 69.7
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.3e-18 96.7 159 37.1
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 2.5e-17 93.2 104 45.2
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 4.3e-17 92.4 59 72.9
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.8e-16 89.7 58 69.0
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.8e-15 87.0 60 70.0
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.7e-10 70.5 110 36.4
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.3e-09 66.2 57 52.6
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.8e-08 63.2 53 52.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 3.6e-08 62.8 109 37.6
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.6e-08 62.8 69 49.3
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 1.4e-07 60.8 52 50.0
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 1.8e-07 60.5 53 50.9
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.1e-07 59.7 69 44.9
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.1e-07 59.7 56 50.0
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 5.3e-07 58.9 76 44.7
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 9.0e-07 58.2 72 45.8
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 9.0e-07 58.2 72 45.8
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.2e-06 57.8 79 43.0
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.0e-06 57.0 71 43.7
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.6e-06 56.6 64 43.8
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.8e-06 55.5 69 44.9
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 7.6e-06 55.1 76 39.5
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 7.6e-06 55.1 69 44.9
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.6e-06 55.1 73 45.2


User provided reference genes

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