Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 0.0e+00 1275.4 647 100.0
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.3e-258 895.6 651 75.4
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 9.6e-233 810.4 653 67.8
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 7.4e-217 757.7 654 61.8
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 9.7e-217 757.3 635 63.6
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 5.0e-213 745.0 653 61.4
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 5.0e-213 745.0 606 65.5
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 8.5e-213 744.2 647 62.8
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.1e-212 743.8 637 62.5
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 4.2e-212 741.9 621 63.8
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.1e-211 739.6 634 62.5
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 2.7e-211 739.2 629 63.8
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 3.6e-211 738.8 610 64.4
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 4.7e-211 738.4 610 64.9
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.4e-210 736.9 646 61.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.0e-210 735.7 595 65.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 3.9e-210 735.3 629 63.3
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 6.7e-210 734.6 637 61.4
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.3e-208 730.3 584 65.6
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 6.3e-208 728.0 624 62.7
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.8e-207 726.5 610 62.8
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.8e-207 726.5 642 60.4
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.8e-207 726.5 623 63.1
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 2.4e-207 726.1 647 60.7
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 7.0e-207 724.5 625 62.2
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 9.1e-207 724.2 650 61.1
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.5e-206 723.4 610 62.6
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.5e-206 723.4 624 62.3
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.5e-206 723.4 622 61.3
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.6e-206 722.6 655 61.5
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.4e-206 722.2 602 63.5
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 3.4e-206 722.2 602 63.6
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 4.5e-206 721.8 610 62.5
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 5.9e-206 721.5 610 62.5
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 7.7e-206 721.1 605 63.3
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.3e-205 720.3 602 62.3
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 5.0e-205 718.4 647 60.0
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 6.5e-205 718.0 606 62.2
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.1e-204 717.2 639 61.3
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.4e-204 716.8 606 62.2
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.4e-204 716.8 670 58.2
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.9e-204 716.5 612 61.4
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 7.2e-204 714.5 567 65.6
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 9.4e-204 714.1 610 62.5
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 9.4e-204 714.1 646 60.4
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 9.4e-204 714.1 659 58.6
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 9.4e-204 714.1 635 61.3
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.2e-203 713.8 632 59.8
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 1.2e-203 713.8 642 60.0
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.1e-203 713.0 615 61.6
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 3.6e-203 712.2 634 60.9
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.3e-202 709.5 623 61.5
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.3e-202 709.5 645 60.8
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 3.0e-202 709.1 553 65.8
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.0e-202 709.1 662 59.1
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 3.9e-202 708.8 624 61.4
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 5.2e-202 708.4 606 62.7
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.1e-201 707.2 611 61.5
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.1e-201 707.2 655 58.2
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.5e-201 706.8 617 61.8
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 2.0e-201 706.4 610 61.8
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 3.3e-201 705.7 633 59.6
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 3.3e-201 705.7 612 61.8
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 7.4e-201 704.5 632 59.5
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 7.4e-201 704.5 613 61.8
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 2.2e-200 703.0 642 59.0
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 6.3e-200 701.4 613 61.3
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 8.2e-200 701.0 599 61.9
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 3.1e-199 699.1 659 57.7
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.0e-199 698.0 613 60.8
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 9.1e-199 697.6 628 59.4
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.2e-198 697.2 601 61.7
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.6e-198 696.8 567 64.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 5.9e-198 694.9 614 60.7
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 5.9e-198 694.9 641 57.9
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 7.7e-198 694.5 609 62.6
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 2.2e-197 693.0 623 60.7
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 4.2e-196 688.7 638 59.1
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 5.5e-196 688.3 581 62.5
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.6e-195 686.8 545 65.3
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.6e-195 686.8 647 58.7
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.6e-195 685.6 602 60.3
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.5e-193 680.2 606 60.4
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.7e-192 676.8 521 66.6
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.8e-192 676.0 566 62.9
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 3.1e-191 672.5 607 59.8
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 3.1e-191 672.5 585 60.5
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 4.1e-191 672.2 581 61.4
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 1.2e-190 670.6 616 60.7
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.7e-190 669.5 599 58.3
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.5e-190 669.1 582 61.3
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.5e-188 663.7 584 59.8
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.2e-188 662.5 613 58.7
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 8.0e-187 657.9 630 58.4
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.3e-186 656.4 553 61.1
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.0e-185 653.3 580 60.7
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.2e-171 607.4 465 67.3
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 6.4e-168 595.1 618 55.0
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 8.3e-160 568.2 477 66.5
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 5.4e-159 565.5 507 58.8
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 3.9e-157 559.3 604 50.7
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 7.8e-142 508.4 531 49.5
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.5e-140 504.2 513 55.6
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.2e-137 494.6 562 48.4
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.9e-132 477.2 528 47.9
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.3e-132 476.5 524 52.9
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.5e-124 451.1 555 45.6
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 6.5e-112 409.1 535 44.3
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.3e-99 368.2 620 39.4
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.4e-95 354.8 604 40.6
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 3.3e-92 343.6 541 41.6
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 9.7e-92 342.0 544 41.2
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 6.3e-91 339.3 569 37.6
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.1e-90 337.0 637 38.5
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.5e-88 329.3 617 39.2
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 4.2e-87 326.6 344 53.5
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 5.5e-87 326.2 607 38.2
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.8e-82 311.2 176 83.0
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.4e-82 310.8 608 38.8
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.0e-72 278.9 547 34.9
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 3.7e-59 233.8 260 49.6
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.6e-46 191.8 162 62.3
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 9.8e-44 182.6 213 53.1
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 2.1e-38 164.9 138 61.6
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 3.7e-35 154.1 88 89.8
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 1.9e-26 125.2 144 57.6
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.1e-24 117.1 222 37.4
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 8.7e-24 116.3 105 56.2
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 1.5e-15 89.0 142 47.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.3e-14 85.9 96 47.9
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 4.2e-10 70.9 110 44.5
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.6e-09 68.9 195 32.3
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.9e-08 64.3 140 39.3
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 6.7e-08 63.5 110 40.9
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.5e-07 61.6 149 33.6
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 5.6e-07 60.5 38 73.7
vmacro06570 Vaccinium macrocarpon HOM05D000143 ORTHO05D426831 2.8e-06 58.2 42 61.9


User provided reference genes

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