Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18906 Vaccinium macrocarpon HOM05D003111 ORTHO05D003502 6.9e-122 440.7 223 100.0
vmacro18907 Vaccinium macrocarpon HOM05D003111 ORTHO05D003502 8.7e-16 88.2 52 80.8
Lj5C60T4 Lonicera japonica HOM05D003111 ORTHO05D003502 9.0e-13 78.2 54 70.4
MSTRG.9457 Avicennia marina HOM05D003111 ORTHO05D003502 2.0e-12 77.0 54 64.8
CSS0043759 Camellia sinensis var. sinensis HOM05D003111 ORTHO05D003502 2.6e-12 76.6 52 71.2
Nn2g11762 Nelumbo nucifera HOM05D003111 ORTHO05D003502 2.6e-12 76.6 52 71.2
Hma1.2p1_0092F.1_g046660 Hydrangea macrophylla HOM05D003111 ORTHO05D003502 3.4e-12 76.3 52 71.2
Atru.chr7.1340 Acer truncatum HOM05D003111 ORTHO05D003502 5.8e-12 75.5 52 65.4
Dinv30506 Davidia involucrata HOM05D003111 ORTHO05D003502 1.0e-11 74.7 52 71.2
Cpa.g.sc451.3 Carica papaya HOM05D003111 ORTHO05D003502 2.2e-11 73.6 54 59.3
CSS0003104 Camellia sinensis var. sinensis HOM05D003111 ORTHO05D003502 2.9e-11 73.2 72 55.6
Rhsim03G0243600 Rhododendron simsii HOM05D003111 ORTHO05D003502 2.9e-11 73.2 54 61.1
Dinv38044 Davidia involucrata HOM05D003111 ORTHO05D003502 4.9e-11 72.4 52 65.4
Migut.I00870 Erythranthe guttata HOM05D003111 ORTHO05D003502 4.9e-11 72.4 54 57.4
Sc12g0009300 Simmondsia chinensis HOM05D003111 ORTHO05D003502 4.9e-11 72.4 52 65.4
GSVIVG01015401001 Vitis vinifera HOM05D003111 ORTHO05D003502 4.9e-11 72.4 51 62.7
Nn8g39209 Nelumbo nucifera HOM05D003111 ORTHO05D003502 1.1e-10 71.2 52 69.2
CANSAT56G4534 Cannabis sativa HOM05D003111 ORTHO05D003502 1.4e-10 70.9 52 63.5
CARHR218820 Cardamine hirsuta HOM05D003111 ORTHO05D003502 1.4e-10 70.9 54 57.4
Dinv41594 Davidia involucrata HOM05D003111 ORTHO05D003502 1.4e-10 70.9 52 61.5
Migut.D01027 Erythranthe guttata HOM05D003111 ORTHO05D003502 1.4e-10 70.9 53 60.4
Gohir.A06G188500 Gossypium hirsutum HOM05D003111 ORTHO05D003502 1.4e-10 70.9 75 50.7
Gohir.D06G197000 Gossypium hirsutum HOM05D003111 ORTHO05D003502 1.4e-10 70.9 75 50.7
Gorai.010G229100 Gossypium raimondii HOM05D003111 ORTHO05D003502 1.4e-10 70.9 75 50.7
SalBow2G0718 Salvia bowleyana HOM05D003111 ORTHO05D003502 1.4e-10 70.9 54 61.1
Prupe.7G229800 Prunus persica HOM05D003111 ORTHO05D003502 1.9e-10 70.5 52 61.5
AT4G13270 Arabidopsis thaliana HOM05D003111 ORTHO05D003502 2.5e-10 70.1 54 57.4
MSTRG.4735 Avicennia marina HOM05D003111 ORTHO05D003502 2.5e-10 70.1 54 57.4
Gohir.D05G129800 Gossypium hirsutum HOM05D003111 ORTHO05D003502 2.5e-10 70.1 74 51.4
Gorai.009G133600 Gossypium raimondii HOM05D003111 ORTHO05D003502 2.5e-10 70.1 74 51.4
TAR624G0200 Trochodendron aralioides HOM05D003111 ORTHO05D003502 2.5e-10 70.1 52 59.6
Carub.0007s2934 Capsella rubella HOM05D003111 ORTHO05D003502 3.2e-10 69.7 52 59.6
QL05p023461 Quercus lobata HOM05D003111 ORTHO05D003502 3.2e-10 69.7 52 61.5
QL10p054853 Quercus lobata HOM05D003111 ORTHO05D003502 3.2e-10 69.7 52 61.5
Sed0000940 Sechium edule HOM05D003111 ORTHO05D003502 3.2e-10 69.7 52 59.6
FvH4_1g04970 Fragaria vesca HOM05D003111 ORTHO05D003502 4.2e-10 69.3 54 59.3
FAN26G2332 Fragaria x ananassa HOM05D003111 ORTHO05D003502 4.2e-10 69.3 54 59.3
QL02p085515 Quercus lobata HOM05D003111 ORTHO05D003502 4.2e-10 69.3 52 57.7
RcHm_v2.0_Chr2g0090601 Rosa chinensis HOM05D003111 ORTHO05D003502 4.2e-10 69.3 54 61.1
Glyma.09G189900 Glycine max HOM05D003111 ORTHO05D003502 5.5e-10 68.9 52 57.7
SGA_v2.0_scaffold4G01998 Striga asiatica HOM05D003111 ORTHO05D003502 5.5e-10 68.9 52 65.4
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 5.5e-10 68.9 54 61.1
COL.COLO4_30384 Corchorus olitorius HOM05D003111 ORTHO05D003502 7.1e-10 68.6 74 48.6
Thhalv10026222m.g Eutrema salsugineum HOM05D003111 ORTHO05D003502 7.1e-10 68.6 54 57.4
AL9U10480 Arabidopsis lyrata HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 55.6
BcaC07g37385 Brassica carinata HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 55.6
A08p07040 Brassica napus HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 55.6
C08p08540 Brassica napus HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 55.6
BolC8t47693H Brassica oleracea HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 55.6
BraA08t32715Z Brassica rapa HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 55.6
CANSAT56G2727 Cannabis sativa HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 57.4
FAN23G2657 Fragaria x ananassa HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 57.4
MD02G1048400 Malus domestica HOM05D003111 ORTHO05D003502 9.3e-10 68.2 52 59.6
Sp7g10860 Schrenkiella parvula HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 55.6
SGA_v2.0_scaffold5G02583 Striga asiatica HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 61.1
THA.LOC104808757 Tarenaya hassleriana HOM05D003111 ORTHO05D003502 9.3e-10 68.2 54 53.7
Aa31sc99G30 Aethionema arabicum HOM05D003111 ORTHO05D003502 1.2e-09 67.8 54 53.7
CSS0042371 Camellia sinensis var. sinensis HOM05D003111 ORTHO05D003502 1.2e-09 67.8 55 63.6
FAN19G2262 Fragaria x ananassa HOM05D003111 ORTHO05D003502 1.6e-09 67.4 54 57.4
Thecc.06G088700 Theobroma cacao HOM05D003111 ORTHO05D003502 1.6e-09 67.4 74 51.4
Hund26161 Selenicereus undatus HOM05D003111 ORTHO05D003502 2.1e-09 67.0 51 60.8
THA.LOC104804584 Tarenaya hassleriana HOM05D003111 ORTHO05D003502 2.1e-09 67.0 54 53.7
TWI63G0670 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 2.1e-09 67.0 54 51.9
Eucgr.F03017 Eucalyptus grandis HOM05D003111 ORTHO05D003502 2.7e-09 66.6 52 61.5
Gohir.A06G061800 Gossypium hirsutum HOM05D003111 ORTHO05D003502 2.7e-09 66.6 54 55.6
Gohir.D06G060100 Gossypium hirsutum HOM05D003111 ORTHO05D003502 2.7e-09 66.6 54 55.6
Gorai.010G069900 Gossypium raimondii HOM05D003111 ORTHO05D003502 2.7e-09 66.6 54 55.6
Manes.16G116700 Manihot esculenta HOM05D003111 ORTHO05D003502 2.7e-09 66.6 52 53.8
TAR636G0799 Trochodendron aralioides HOM05D003111 ORTHO05D003502 2.7e-09 66.6 50 64.0
CiPaw.01G238900 Carya illinoinensis HOM05D003111 ORTHO05D003502 3.5e-09 66.2 52 57.7
ClCG06G008490 Citrullus lanatus HOM05D003111 ORTHO05D003502 3.5e-09 66.2 52 57.7
Gohir.A05G130400 Gossypium hirsutum HOM05D003111 ORTHO05D003502 3.5e-09 66.2 74 48.6
PGR102G1781 Punica granatum HOM05D003111 ORTHO05D003502 3.5e-09 66.2 54 51.9
SEGI_20064 Sequoiadendron giganteum HOM05D003111 ORTHO05D003502 3.5e-09 66.2 52 57.7
Haze_00747 Corylus avellana HOM05D003111 ORTHO05D003502 4.6e-09 65.9 68 50.0
Oeu033488.1 Olea europaea HOM05D003111 ORTHO05D003502 4.6e-09 65.9 52 61.5
PGR102G3024 Punica granatum HOM05D003111 ORTHO05D003502 4.6e-09 65.9 52 63.5
TWI18G1181 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 4.6e-09 65.9 52 61.5
CiPaw.04G164900 Carya illinoinensis HOM05D003111 ORTHO05D003502 6.0e-09 65.5 54 53.7
Lalb_Chr22g0352841 Lupinus albus HOM05D003111 ORTHO05D003502 6.0e-09 65.5 52 53.8
MD15G1186800 Malus domestica HOM05D003111 ORTHO05D003502 6.0e-09 65.5 52 55.8
BcaB01g01534 Brassica carinata HOM05D003111 ORTHO05D003502 7.9e-09 65.1 54 53.7
Haze_25707 Corylus avellana HOM05D003111 ORTHO05D003502 7.9e-09 65.1 54 55.6
DCAR_016220 Daucus carota HOM05D003111 ORTHO05D003502 7.9e-09 65.1 54 53.7
Potri.006G159400 Populus trichocarpa HOM05D003111 ORTHO05D003502 7.9e-09 65.1 54 53.7
TWI34G0805 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 7.9e-09 65.1 54 55.6
arahy.Tifrunner.gnm1.ann1.4K1995 Arachis hypogaea HOM05D003111 ORTHO05D003502 1.0e-08 64.7 54 55.6
arahy.Tifrunner.gnm1.ann1.WG3081 Arachis hypogaea HOM05D003111 ORTHO05D003502 1.0e-08 64.7 54 55.6
PSO063G2693 Papaver somniferum HOM05D003111 ORTHO05D003502 1.0e-08 64.7 54 53.7
SalBow2G0006 Salvia bowleyana HOM05D003111 ORTHO05D003502 1.0e-08 64.7 52 57.7
Sc18g0001150 Simmondsia chinensis HOM05D003111 ORTHO05D003502 1.0e-08 64.7 54 55.6
Eucgr.J02990 Eucalyptus grandis HOM05D003111 ORTHO05D003502 1.3e-08 64.3 52 59.6
Glyma.07G087000 Glycine max HOM05D003111 ORTHO05D003502 1.3e-08 64.3 53 56.6
Lj7A649T23 Lonicera japonica HOM05D003111 ORTHO05D003502 1.3e-08 64.3 52 53.8
Cpa.g.sc68.12 Carica papaya HOM05D003111 ORTHO05D003502 1.8e-08 63.9 52 57.7
Cfa015758 Carpinus fangiana HOM05D000012 ORTHO05D001372 1.8e-08 63.9 52 57.7
Oeu029622.1 Olea europaea HOM05D003111 ORTHO05D003502 1.8e-08 63.9 54 51.9
Zm00001eb216980 Zea mays HOM05D003111 ORTHO05D003502 1.8e-08 63.9 52 57.7
ATR1134G056 Amborella trichopoda HOM05D003111 ORTHO05D003502 2.3e-08 63.5 61 50.8
Manes.03G019600 Manihot esculenta HOM05D003111 ORTHO05D003502 2.3e-08 63.5 52 53.8
PSO782G1457 Papaver somniferum HOM05D003111 ORTHO05D003502 2.3e-08 63.5 54 53.7
AUR62011004 Chenopodium quinoa HOM05D003111 ORTHO05D003502 3.0e-08 63.2 53 54.7
Ciclev10009328m.g Citrus clementina HOM05D003111 ORTHO05D003502 3.0e-08 63.2 52 53.8
Gohir.D07G005200 Gossypium hirsutum HOM05D003111 ORTHO05D003502 3.0e-08 63.2 54 51.9
Gorai.001G004800 Gossypium raimondii HOM05D003111 ORTHO05D003502 3.0e-08 63.2 54 51.9
Hund00618 Selenicereus undatus HOM05D003111 ORTHO05D003502 3.0e-08 63.2 52 51.9
MSTRG.11074 Avicennia marina HOM05D003111 ORTHO05D003502 3.9e-08 62.8 51 51.0
CiPaw.03G232900 Carya illinoinensis HOM05D003111 ORTHO05D003502 3.9e-08 62.8 54 51.9
Cc04_g03400 Coffea canephora HOM05D003111 ORTHO05D003502 3.9e-08 62.8 53 52.8
Duzib235G0853 Durio zibethinus HOM05D003111 ORTHO05D003502 3.9e-08 62.8 52 55.8
SHI02767 Sapria himalayana HOM05D003111 ORTHO05D003502 3.9e-08 62.8 76 46.1
Thecc.09G111600 Theobroma cacao HOM05D003111 ORTHO05D003502 3.9e-08 62.8 54 51.9
Aqoxy7G01698 Aquilegia oxysepala HOM05D003111 ORTHO05D003502 5.1e-08 62.4 54 51.9
HPP92_020378 Vanilla planifolia HOM05D003111 ORTHO05D003502 5.1e-08 62.4 54 50.0
Gohir.A07G006700 Gossypium hirsutum HOM05D003111 ORTHO05D003502 8.7e-08 61.6 54 50.0
Nitab4.5_0000671g0140 Nicotiana tabacum HOM05D000818 ORTHO05D002481 1.1e-07 61.2 52 50.0
Nitab4.5_0005851g0040 Nicotiana tabacum HOM05D000818 ORTHO05D002481 1.1e-07 61.2 52 50.0
Hund09198 Selenicereus undatus HOM05D003111 ORTHO05D003502 1.1e-07 61.2 51 58.8
Thecc.06G088900 Theobroma cacao HOM05D003111 ORTHO05D003502 1.1e-07 61.2 97 40.2
MSTRG.22688 Avicennia marina HOM05D003111 ORTHO05D003502 1.5e-07 60.8 54 51.9
EL10Ac8g18506 Beta vulgaris HOM05D003111 ORTHO05D003502 1.5e-07 60.8 51 54.9
Carub.0001s4132 Capsella rubella HOM05D003111 ORTHO05D003502 1.5e-07 60.8 52 55.8
COL.COLO4_34909 Corchorus olitorius HOM05D003111 ORTHO05D003502 1.5e-07 60.8 52 51.9
TWI12G1025 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 1.5e-07 60.8 52 55.8
A05p19060 Brassica napus HOM05D003111 ORTHO05D003502 1.9e-07 60.5 52 53.8
BraA05t20807Z Brassica rapa HOM05D003111 ORTHO05D003502 1.9e-07 60.5 52 53.8
AUR62042923 Chenopodium quinoa HOM05D003111 ORTHO05D003502 1.9e-07 60.5 72 40.3
Lj2g0013329 Lotus japonicus HOM05D003111 ORTHO05D003502 1.9e-07 60.5 53 52.8
Oeu028156.1 Olea europaea HOM05D003111 ORTHO05D003502 1.9e-07 60.5 54 51.9
BcaB02g11007 Brassica carinata HOM05D003111 ORTHO05D003502 2.5e-07 60.1 52 53.8
BcaB02g11008 Brassica carinata HOM05D003111 ORTHO05D003502 2.5e-07 60.1 52 53.8
BcaC08g43988 Brassica carinata HOM05D003111 ORTHO05D003502 2.5e-07 60.1 52 53.8
C06p13910 Brassica napus HOM05D003111 ORTHO05D003502 2.5e-07 60.1 52 53.8
BolC6t36571H Brassica oleracea HOM05D003111 ORTHO05D003502 2.5e-07 60.1 52 53.8
Os03g0696000 Oryza sativa ssp. japonica HOM05D003111 ORTHO05D003502 2.5e-07 60.1 52 53.8
TPR.G35333 Trifolium pratense HOM05D003111 ORTHO05D003502 2.5e-07 60.1 52 53.8
CAN.G438.70 Capsicum annuum HOM05D003111 ORTHO05D003502 3.3e-07 59.7 52 51.9
AUR62016447 Chenopodium quinoa HOM05D003111 ORTHO05D003502 3.3e-07 59.7 52 50.0
Sabra01G0146200 Salix brachista HOM05D003111 ORTHO05D003502 3.3e-07 59.7 52 55.8
AT1G52330 Arabidopsis thaliana HOM05D003111 ORTHO05D003502 4.3e-07 59.3 52 55.8
EL10Ac3g06252 Beta vulgaris HOM05D003111 ORTHO05D003502 4.3e-07 59.3 72 43.1
CARHR042460 Cardamine hirsuta HOM05D003111 ORTHO05D003502 4.3e-07 59.3 52 53.8
Ciclev10026444m.g Citrus clementina HOM05D003111 ORTHO05D003502 4.3e-07 59.3 52 55.8
Manes.11G046800 Manihot esculenta HOM05D003111 ORTHO05D003502 5.7e-07 58.9 74 47.3
Zm00001eb053810 Zea mays HOM05D003111 ORTHO05D003502 5.7e-07 58.9 52 53.8
Solyc03g120150.3 Solanum lycopersicum HOM05D003111 ORTHO05D003502 7.4e-07 58.5 52 53.8
Sopen03g039020 Solanum pennellii HOM05D003111 ORTHO05D003502 7.4e-07 58.5 52 53.8
TPR.G37188 Trifolium pratense HOM05D003111 ORTHO05D003502 7.4e-07 58.5 52 51.9
Thhalv10011771m.g Eutrema salsugineum HOM05D003111 ORTHO05D003502 9.6e-07 58.2 51 54.9
Phvul.004G162700 Phaseolus vulgaris HOM05D003111 ORTHO05D003502 9.6e-07 58.2 54 51.9
Sabra03G0031100 Salix brachista HOM05D003111 ORTHO05D003502 9.6e-07 58.2 52 53.8
PGSC0003DMG400005685 Solanum tuberosum HOM05D003111 ORTHO05D003502 9.6e-07 58.2 52 51.9
HanXRQChr10g0313371 Helianthus annuus HOM05D003111 ORTHO05D003502 1.3e-06 57.8 52 51.9
Lj3g0007717 Lotus japonicus HOM05D003111 ORTHO05D003502 1.3e-06 57.8 50 52.0
Aa31LG10G2580 Aethionema arabicum HOM05D003111 ORTHO05D003502 1.6e-06 57.4 52 50.0
Sp1g38910 Schrenkiella parvula HOM05D003111 ORTHO05D003502 1.6e-06 57.4 51 52.9
vmacro06209 Vaccinium macrocarpon HOM05D003018 ORTHO05D003502 1.6e-06 57.4 43 65.1
Psat1g041160 Pisum sativum HOM05D003111 ORTHO05D003502 2.1e-06 57.0 55 49.1
Potri.001G180600 Populus trichocarpa HOM05D003111 ORTHO05D003502 2.1e-06 57.0 52 53.8
Lsat_1_v5_gn_5_130241 Lactuca sativa HOM05D003111 ORTHO05D003502 2.8e-06 56.6 52 50.0
VMungo0464G0430 Vigna mungo HOM05D003111 ORTHO05D003502 2.8e-06 56.6 54 48.1
CDE07G1813 Ceratophyllum demersum HOM05D003111 ORTHO05D003502 3.7e-06 56.2 51 47.1
FvH4_6g31230 Fragaria vesca HOM05D003111 ORTHO05D003502 3.7e-06 56.2 52 53.8
FAN02G1838 Fragaria x ananassa HOM05D003111 ORTHO05D003502 3.7e-06 56.2 52 53.8
FAN14G5240 Fragaria x ananassa HOM05D003111 ORTHO05D003502 3.7e-06 56.2 52 53.8
Glyma.13G359200 Glycine max HOM05D003111 ORTHO05D003502 3.7e-06 56.2 52 51.9
Medtr2g102080 Medicago truncatula HOM05D003111 ORTHO05D003502 3.7e-06 56.2 52 50.0
RcHm_v2.0_Chr2g0137941 Rosa chinensis HOM05D003111 ORTHO05D003502 3.7e-06 56.2 52 53.8
HanXRQChr14g0456011 Helianthus annuus HOM05D003111 ORTHO05D003502 6.3e-06 55.5 52 50.0
Prupe.3G070600 Prunus persica HOM05D003111 ORTHO05D003502 6.3e-06 55.5 52 50.0
Atru.chr1.3277 Acer truncatum HOM05D003111 ORTHO05D003502 8.2e-06 55.1 52 50.0
ECA234G1950 Erigeron canadensis HOM05D003111 ORTHO05D003502 8.2e-06 55.1 50 48.0


User provided reference genes

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