Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 6.3e-227 790.4 396 100.0
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 2.0e-148 529.6 397 75.8
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.0e-120 437.6 399 63.9
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 4.4e-111 405.6 403 62.0
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 5.7e-111 405.2 398 62.3
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 1.9e-106 390.2 354 61.9
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 5.5e-106 388.7 414 57.5
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.6e-105 386.0 206 93.2
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.0e-103 380.2 293 69.6
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 5.7e-103 378.6 402 57.0
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 7.5e-103 378.3 208 91.3
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 9.8e-103 377.9 206 91.7
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.3e-102 377.5 208 91.3
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.8e-102 376.3 208 90.9
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 3.7e-102 375.9 206 90.8
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 4.8e-102 375.6 401 57.4
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 6.3e-102 375.2 352 61.6
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 8.3e-102 374.8 407 56.3
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.1e-101 374.4 401 56.4
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.4e-101 374.0 328 64.0
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.8e-101 373.6 206 91.7
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 3.1e-101 372.9 320 64.1
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 3.1e-101 372.9 208 89.4
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 3.1e-101 372.9 399 55.9
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 4.1e-101 372.5 208 88.9
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 5.4e-101 372.1 297 67.3
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 5.4e-101 372.1 205 90.7
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 9.1e-101 371.3 206 89.8
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.2e-100 370.9 206 89.8
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.6e-100 370.5 206 89.8
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.7e-100 369.8 206 89.8
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 2.7e-100 369.8 206 89.3
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 4.5e-100 369.0 401 55.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 4.5e-100 369.0 208 88.5
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 5.9e-100 368.6 206 89.3
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.0e-99 367.9 203 90.6
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.3e-99 367.5 398 55.3
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.3e-99 367.5 206 87.9
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.3e-99 367.5 206 87.9
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.3e-99 367.5 206 90.8
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.7e-99 367.1 362 58.0
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 2.3e-99 366.7 205 90.2
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 2.9e-99 366.3 208 88.0
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 3.8e-99 365.9 205 89.3
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 5.0e-99 365.5 205 88.8
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 5.0e-99 365.5 327 62.1
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 6.6e-99 365.2 376 57.7
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 8.6e-99 364.8 207 87.9
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 8.6e-99 364.8 206 88.3
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 8.6e-99 364.8 206 87.9
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 8.6e-99 364.8 206 88.3
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 8.6e-99 364.8 205 89.3
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.1e-98 364.4 206 88.8
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.5e-98 364.0 336 61.3
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.9e-98 363.6 206 87.4
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.9e-98 363.6 362 57.7
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.9e-98 363.6 206 88.3
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 4.2e-98 362.5 205 89.3
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 4.2e-98 362.5 205 89.3
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 4.2e-98 362.5 205 89.3
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 5.5e-98 362.1 360 58.3
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 5.5e-98 362.1 347 59.4
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 5.5e-98 362.1 206 87.4
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 7.2e-98 361.7 206 87.9
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 7.2e-98 361.7 203 91.1
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 1.6e-97 360.5 208 86.1
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.6e-97 360.5 206 86.9
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.6e-97 360.5 208 86.5
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 2.1e-97 360.1 208 86.1
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.8e-97 359.8 205 88.3
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.6e-97 359.4 206 86.4
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 3.6e-97 359.4 208 86.1
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.6e-97 359.4 208 86.1
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 3.6e-97 359.4 206 87.4
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 4.7e-97 359.0 208 85.6
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 4.7e-97 359.0 208 85.6
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 4.7e-97 359.0 208 85.6
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 4.7e-97 359.0 208 85.6
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.7e-97 359.0 208 85.6
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 6.1e-97 358.6 208 85.6
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 6.1e-97 358.6 208 85.6
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 6.1e-97 358.6 208 85.6
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 6.1e-97 358.6 208 85.6
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 8.0e-97 358.2 206 85.9
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.0e-96 357.8 208 85.6
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.8e-96 357.1 208 85.6
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 2.3e-96 356.7 206 86.4
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 3.0e-96 356.3 208 85.1
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.0e-96 356.3 208 85.1
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.0e-96 356.3 208 85.1
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 5.2e-96 355.5 208 84.6
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 6.8e-96 355.1 208 85.1
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 6.8e-96 355.1 206 85.4
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.5e-95 354.0 206 85.9
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 5.7e-95 352.1 208 84.1
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 7.5e-95 351.7 206 84.5
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.3e-94 350.9 206 84.5
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.7e-94 350.5 206 84.5
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 4.9e-94 349.0 206 84.5
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.3e-94 348.2 201 88.1
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 3.5e-92 342.8 205 83.4
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.7e-91 340.5 206 82.5
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.7e-91 340.5 206 85.4
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.3e-90 336.3 198 84.8
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.0e-88 329.3 204 79.4
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.5e-87 327.4 206 78.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.3e-86 324.3 211 79.6
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 9.2e-85 318.2 206 76.7
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.7e-84 316.6 206 76.2
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 5.0e-83 312.4 206 74.8
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 6.6e-83 312.0 176 90.3
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.5e-82 310.8 250 65.6
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.6e-81 307.4 164 91.5
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 3.6e-81 306.2 176 88.1
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.0e-81 305.1 221 71.9
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.1e-80 304.7 206 78.2
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.3e-80 303.5 180 86.7
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 5.2e-80 302.4 163 90.8
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 4.1e-77 292.7 184 81.5
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 3.5e-76 289.7 176 80.1
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 2.3e-75 287.0 206 69.9
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.9e-62 242.7 132 87.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 6.4e-46 189.1 203 57.6
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 5.1e-43 179.5 198 48.5
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.1e-40 171.8 109 82.6
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 4.5e-39 166.4 202 45.5
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 7.4e-34 149.1 205 39.5
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.7e-30 137.9 101 68.3
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.4e-29 134.8 203 44.3
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.7e-28 130.6 157 49.7
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.4e-26 122.5 64 93.8
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 7.4e-18 95.9 64 71.9
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 2.5e-13 80.9 54 75.9
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 6.1e-12 76.3 49 79.6
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 3.9e-11 73.6 48 81.2
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.4e-10 69.3 36 94.4
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-08 64.3 46 71.7
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 5.3e-08 63.2 37 78.4
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 7.0e-08 62.8 38 71.1
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 2.9e-06 57.4 40 77.5


User provided reference genes

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