Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 0.0e+00 1182.5 596 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 2.4e-270 935.3 594 78.5
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-259 899.8 592 74.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 3.8e-252 874.8 598 74.2
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 9.8e-248 860.1 596 73.2
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 4.1e-246 854.7 590 72.2
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 4.0e-241 838.2 593 70.8
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 9.2e-238 827.0 589 69.8
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.3e-236 822.4 613 68.5
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.6e-234 816.2 590 69.3
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 6.1e-234 814.3 598 68.7
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 4.0e-233 811.6 594 68.4
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.7e-231 806.2 594 67.8
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.9e-231 804.7 591 71.6
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 6.4e-231 804.3 615 67.3
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.2e-229 800.0 592 69.3
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.2e-229 800.0 597 67.5
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 3.5e-229 798.5 590 68.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.0e-228 797.0 598 68.2
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.0e-228 797.0 600 68.0
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.7e-228 796.2 597 67.0
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 5.0e-228 794.7 597 66.5
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.1e-227 793.5 597 66.3
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.5e-227 792.3 593 66.6
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.3e-227 791.6 597 66.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 7.3e-227 790.8 597 66.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 8.9e-225 783.9 597 65.8
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.2e-224 783.5 593 67.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.2e-224 783.5 597 66.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.4e-223 777.7 593 66.6
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.2e-222 775.4 520 73.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 4.1e-222 775.0 592 68.2
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.1e-222 775.0 596 66.4
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.1e-221 772.7 599 64.6
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 7.8e-221 770.8 597 64.5
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.0e-220 770.4 595 66.1
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.5e-219 765.8 596 65.3
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.5e-219 765.8 591 64.6
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.3e-219 765.0 595 63.9
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.3e-219 764.2 584 65.9
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 9.5e-219 763.8 599 63.4
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.2e-218 763.5 522 71.5
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 8.1e-218 760.8 589 64.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 4.4e-216 755.0 516 72.3
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 5.8e-216 754.6 597 63.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.2e-215 752.7 608 64.0
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 2.2e-215 752.7 597 65.7
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 8.3e-215 750.7 595 65.4
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.1e-213 746.1 588 64.5
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.9e-212 741.9 606 60.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 3.9e-212 741.9 592 62.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 6.6e-212 741.1 653 60.8
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.6e-212 740.7 600 64.3
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 8.6e-212 740.7 592 65.0
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.3e-211 738.4 562 69.6
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 5.6e-211 738.0 789 52.0
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 7.3e-211 737.6 607 63.6
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.8e-210 735.7 596 63.8
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-209 733.8 598 63.9
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.8e-209 733.0 603 60.2
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.4e-209 732.6 595 61.7
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.0e-209 731.9 586 64.5
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.2e-209 731.5 548 67.5
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.6e-208 729.2 597 61.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 3.4e-208 728.8 611 59.7
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 4.4e-208 728.4 616 59.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 4.4e-208 728.4 603 60.5
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-207 726.5 603 60.4
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 2.2e-207 726.1 611 59.6
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 6.4e-207 724.5 606 59.2
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.4e-206 723.4 596 63.1
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.9e-206 723.0 622 59.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.9e-206 723.0 594 59.9
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.2e-206 722.2 596 63.1
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 4.6e-205 718.4 603 62.0
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.3e-204 716.8 603 59.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.7e-204 716.5 596 62.6
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 8.7e-204 714.1 603 61.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.4e-201 706.1 599 59.1
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 3.1e-201 705.7 598 60.9
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 4.0e-201 705.3 588 61.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-199 699.9 597 59.0
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.9e-198 696.4 598 58.7
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 7.8e-197 691.0 581 62.8
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 7.6e-192 674.5 522 61.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.8e-191 672.2 618 58.9
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.5e-187 659.4 485 67.8
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.4e-182 643.7 531 60.5
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.9e-182 643.3 590 56.4
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 4.2e-182 642.1 562 59.6
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 9.6e-179 630.9 620 54.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.1e-177 627.5 599 53.8
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.1e-177 627.5 595 54.6
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.1e-173 613.2 355 85.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 8.2e-162 574.7 472 63.3
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.8e-161 573.5 604 50.2
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.8e-154 549.7 610 50.0
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 9.4e-134 481.5 382 61.8
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.6e-127 458.8 445 53.5
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.0e-120 437.2 551 45.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 8.6e-119 431.8 280 76.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 2.5e-118 430.3 506 45.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.2e-117 427.9 571 42.4
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.1e-117 427.2 304 69.4
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-116 423.7 337 63.8
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.5e-115 421.0 573 42.2
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.1e-89 335.1 280 61.1
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.2e-88 331.6 412 46.4
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 9.0e-84 315.5 216 73.6
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 4.9e-82 309.7 216 72.7
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-74 285.0 296 46.3
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.1e-72 277.7 172 79.1
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 8.7e-71 272.3 341 41.6
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 8.1e-69 265.8 371 38.5
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 9.0e-68 262.3 181 74.6
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 6.3e-45 186.4 112 82.1
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.9e-44 183.0 123 69.1
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.7e-37 161.8 125 68.0
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-35 154.8 108 67.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.0e-34 150.2 112 66.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 7.5e-30 136.3 102 64.7
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.1e-28 132.5 568 23.1
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.1e-28 131.0 269 34.2
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 7.7e-27 126.3 74 81.1
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.2e-25 120.9 131 51.1
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.7e-24 117.9 162 37.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.7e-24 117.1 94 52.1
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.8e-21 107.8 215 34.4
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.7e-21 107.5 105 47.6
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.8e-21 107.1 80 61.2
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 2.4e-20 104.8 80 60.0
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.4e-20 104.8 82 58.5
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 3.4e-14 84.3 67 56.7
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.4e-14 84.3 123 44.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 7.5e-14 83.2 72 56.9
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 2.2e-13 81.6 171 36.3
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-12 79.3 62 61.3
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 6.6e-10 70.1 62 56.5
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.5e-09 68.9 200 26.5
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.9e-09 68.6 138 34.8
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 5.6e-09 67.0 58 62.1
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 5.2e-07 60.5 33 78.8


User provided reference genes

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