Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.3e-309 1065.4 519 100.0
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.0e-249 865.5 560 78.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 6.7e-245 850.5 557 77.6
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.8e-228 793.5 491 79.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.8e-227 792.0 491 78.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 4.0e-213 745.0 489 73.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.2e-201 706.8 489 69.3
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.5e-188 663.3 489 67.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.0e-188 662.9 489 65.6
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.6e-188 662.5 489 65.0
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 7.6e-188 661.0 497 68.4
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 9.9e-188 660.6 489 64.6
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.5e-185 652.1 491 65.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 3.5e-185 652.1 494 66.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.3e-183 644.4 490 67.3
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.3e-183 644.4 496 66.7
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.1e-182 642.9 501 64.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.8e-182 642.5 492 65.0
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.4e-181 639.4 489 64.8
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.4e-181 639.4 492 64.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 6.9e-181 637.9 492 64.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.2e-180 637.1 492 64.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.0e-180 636.3 492 64.6
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 5.8e-180 634.8 500 63.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 9.9e-180 634.0 489 64.8
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 9.9e-180 634.0 446 68.4
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.3e-179 633.6 492 64.4
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.4e-178 630.2 491 63.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.1e-177 626.3 491 63.3
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-177 625.9 493 63.7
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-177 625.9 493 63.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.5e-177 625.5 498 63.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.0e-176 624.0 495 63.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.0e-176 624.0 492 63.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.1e-175 620.5 492 63.0
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.9e-175 619.8 446 66.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 7.4e-175 617.8 494 62.6
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.6e-174 616.7 491 62.9
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.6e-174 615.5 460 65.7
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.8e-174 615.1 489 63.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 4.8e-174 615.1 489 63.4
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.1e-173 614.0 489 61.3
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.6e-172 609.4 495 61.4
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 3.4e-172 609.0 458 66.2
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.2e-171 606.3 495 62.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 8.4e-171 604.4 480 62.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 9.3e-170 600.9 460 64.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.5e-169 599.0 479 62.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-168 597.0 506 60.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 6.7e-168 594.7 442 64.9
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.9e-167 593.2 399 71.9
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.9e-167 593.2 482 62.9
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.5e-167 592.8 453 64.9
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.5e-167 592.8 475 62.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 9.6e-167 590.9 461 64.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.3e-165 585.1 475 60.8
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.4e-164 582.4 516 61.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 3.8e-163 578.9 459 61.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 8.4e-163 577.8 402 69.4
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 4.2e-162 575.5 427 66.0
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 5.5e-162 575.1 495 59.8
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 7.1e-162 574.7 438 65.3
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.6e-161 573.5 399 69.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.6e-161 573.5 458 60.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.0e-160 570.9 460 61.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.3e-160 569.7 521 58.0
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.8e-158 562.0 397 67.8
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.3e-158 561.6 516 58.5
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 8.2e-158 561.2 410 68.5
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 8.2e-158 561.2 490 60.0
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.1e-157 560.8 534 55.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 4.5e-156 555.4 487 60.0
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.6e-156 554.7 404 67.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.0e-155 554.3 487 59.8
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.5e-154 549.7 501 56.3
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.2e-154 549.3 481 58.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.5e-154 548.5 399 65.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 5.5e-154 548.5 527 57.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.6e-153 545.4 476 59.0
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.3e-152 543.9 742 43.3
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.8e-152 543.5 476 58.8
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.8e-152 543.5 479 59.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.8e-152 543.5 406 65.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.3e-152 543.1 446 61.9
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.9e-152 542.3 465 60.6
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 6.7e-152 541.6 451 62.3
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 8.7e-152 541.2 451 58.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 8.7e-152 541.2 459 60.1
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 8.7e-152 541.2 516 57.0
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.1e-151 540.8 406 65.0
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.2e-150 536.6 404 65.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 8.2e-150 534.6 408 64.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 4.1e-149 532.3 400 66.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 9.0e-149 531.2 498 57.6
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.4e-148 529.3 415 64.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.0e-147 525.4 479 56.4
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.4e-146 523.9 461 57.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.2e-146 522.3 464 59.5
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.1e-145 518.5 420 61.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.9e-145 518.1 480 54.8
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 5.1e-144 515.4 462 58.2
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.7e-144 515.0 394 63.5
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.3e-143 512.3 404 61.9
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 7.4e-143 511.5 382 64.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 7.4e-143 511.5 475 57.1
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 8.2e-142 508.1 416 59.4
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.4e-141 506.5 485 53.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 2.4e-141 506.5 489 55.2
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.1e-141 506.1 357 66.7
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.3e-141 505.4 404 60.9
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 5.3e-141 505.4 416 59.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 5.3e-141 505.4 416 59.1
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.2e-140 504.2 473 57.7
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 4.5e-140 502.3 478 55.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-140 502.3 478 55.6
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 4.5e-140 502.3 478 55.6
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.5e-140 502.3 633 46.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 7.7e-140 501.5 317 74.1
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 7.7e-140 501.5 429 59.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.0e-139 501.1 417 60.0
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.9e-139 499.6 371 64.4
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.0e-139 498.8 429 59.4
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-138 497.7 418 59.3
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-138 497.7 429 59.2
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.5e-138 495.4 476 55.3
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 9.4e-138 494.6 476 55.3
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.2e-137 494.2 371 63.6
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-137 494.2 379 64.1
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 7.9e-137 491.5 360 65.6
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 7.9e-137 491.5 404 59.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.0e-136 491.1 434 59.0
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.4e-136 490.7 341 70.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.3e-136 490.0 343 69.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.0e-136 489.6 425 60.5
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-135 486.5 417 58.8
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 9.7e-135 484.6 378 63.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-133 480.3 396 59.6
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.5e-132 475.7 384 62.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.8e-131 472.6 472 52.5
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 5.2e-128 462.2 405 57.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.7e-126 456.1 361 63.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.6e-121 439.5 402 54.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.0e-120 436.4 311 66.9
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.7e-116 423.3 403 51.6
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.7e-116 423.3 402 52.5
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.0e-111 407.1 376 55.1
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-103 381.3 227 83.7
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.0e-99 365.9 220 80.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.2e-93 346.7 350 55.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.3e-91 341.3 275 64.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 5.1e-83 312.8 259 61.0
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.1e-77 292.4 415 46.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 7.1e-77 292.4 202 68.3
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 3.8e-70 270.0 176 69.3
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.4e-64 251.5 232 56.0
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 5.8e-63 246.1 311 43.4
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.8e-56 224.6 307 41.0
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.8e-49 200.7 431 33.4
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.2e-38 164.5 120 71.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.9e-34 151.4 264 39.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.3e-34 150.6 138 57.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.7e-34 149.8 141 59.6
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.1e-29 135.6 286 32.5
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.2e-29 134.0 159 47.2
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.3e-27 127.9 116 53.4
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 3.0e-27 127.5 657 22.8
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.1e-24 117.5 99 56.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 5.0e-22 110.2 125 50.4
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.9e-19 100.5 237 34.6
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.5e-15 87.0 101 49.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.3e-11 74.7 393 23.7
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.7e-11 73.2 47 70.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.0e-10 71.6 73 47.9


User provided reference genes

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