Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.8e-146 521.9 265 100.0
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 6.5e-119 431.0 251 88.0
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.3e-108 396.0 255 82.4
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.8e-105 386.3 220 86.8
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.7e-103 379.8 240 80.0
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 3.8e-103 378.6 218 85.8
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 3.8e-103 378.6 216 87.5
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 6.5e-103 377.9 234 81.2
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 4.2e-102 375.2 216 86.6
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 4.2e-102 375.2 219 84.5
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 7.2e-102 374.4 221 85.1
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.6e-101 373.2 217 85.3
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.0e-100 370.5 225 80.9
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 3.0e-100 369.0 216 85.2
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 3.0e-100 369.0 226 82.3
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.6e-99 365.9 215 84.2
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 2.6e-99 365.9 215 84.7
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.6e-99 365.9 213 85.9
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 4.4e-99 365.2 224 81.7
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 5.7e-99 364.8 224 81.7
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 5.7e-99 364.8 224 81.7
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 7.5e-99 364.4 216 81.0
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 7.5e-99 364.4 253 73.1
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 9.8e-99 364.0 214 84.1
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 9.8e-99 364.0 244 74.6
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.7e-98 363.2 217 82.0
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.2e-98 362.8 227 80.2
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.2e-98 362.8 223 82.1
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.7e-98 362.1 216 83.3
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 4.8e-98 361.7 216 80.1
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 8.3e-98 360.9 214 82.7
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.1e-97 360.5 234 76.9
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.4e-97 360.1 216 80.6
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.8e-97 359.8 240 75.0
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.8e-97 359.8 253 71.9
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 3.1e-97 359.0 216 83.3
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 3.1e-97 359.0 221 81.4
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 4.1e-97 358.6 221 81.0
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 5.4e-97 358.2 211 84.8
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 5.4e-97 358.2 221 78.7
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 9.1e-97 357.5 216 80.1
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 9.1e-97 357.5 216 82.4
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.6e-96 356.7 226 79.6
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.0e-96 356.3 213 80.8
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 2.7e-96 355.9 217 82.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 4.5e-96 355.1 216 81.9
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.9e-96 354.8 256 72.3
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.3e-95 353.6 216 80.6
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 2.3e-95 352.8 247 72.1
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 2.9e-95 352.4 216 80.1
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.9e-95 352.4 211 81.0
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 3.8e-95 352.1 216 80.1
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 3.8e-95 352.1 214 80.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.0e-95 351.7 216 80.1
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 6.6e-95 351.3 216 80.1
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 6.6e-95 351.3 217 80.6
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 8.6e-95 350.9 216 79.6
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 8.6e-95 350.9 216 79.6
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 8.6e-95 350.9 214 79.9
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.1e-94 350.5 218 81.7
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.1e-94 350.5 216 80.6
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.5e-94 350.1 230 76.1
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.9e-94 349.7 217 78.8
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.5e-94 349.4 216 79.2
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.5e-94 349.4 216 79.2
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 4.2e-94 348.6 215 81.9
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 9.5e-94 347.4 216 78.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 9.5e-94 347.4 215 81.4
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.6e-93 346.7 217 78.8
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.8e-93 345.9 215 80.9
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 6.1e-93 344.7 213 80.8
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.0e-92 344.0 217 78.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.4e-92 343.6 212 79.2
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.8e-92 343.2 216 78.7
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.0e-92 342.4 214 79.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 5.2e-92 341.7 259 68.3
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 6.8e-92 341.3 210 77.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 8.9e-92 340.9 224 76.3
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 8.9e-92 340.9 219 75.8
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.5e-91 340.1 214 79.0
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 5.7e-91 338.2 214 78.5
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.2e-90 336.3 212 78.8
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 8.3e-90 334.3 216 75.5
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.1e-89 334.0 214 77.1
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 9.2e-89 330.9 213 77.9
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.2e-88 330.5 214 75.2
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.0e-88 329.7 214 75.7
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 5.9e-88 328.2 221 75.1
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 7.8e-88 327.8 259 66.4
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.7e-87 326.6 216 74.1
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 3.9e-87 325.5 216 73.6
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 6.6e-87 324.7 214 73.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 8.6e-87 324.3 223 74.4
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 8.6e-87 324.3 216 75.0
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.5e-86 323.6 216 74.1
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.9e-86 323.2 214 73.4
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.9e-86 323.2 214 73.4
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 4.3e-86 322.0 214 72.9
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 7.3e-86 321.2 214 72.9
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 7.3e-86 321.2 214 72.4
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 2.8e-85 319.3 211 76.3
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 2.8e-85 319.3 211 76.3
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.8e-84 316.6 219 75.3
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 9.8e-83 310.8 187 82.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 2.9e-82 309.3 223 72.2
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.4e-81 306.2 213 70.4
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 5.4e-81 305.1 214 70.1
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.6e-80 303.5 215 69.8
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.7e-79 300.1 213 67.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 6.2e-77 291.6 217 68.2
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 8.0e-77 291.2 177 80.8
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.1e-76 290.8 215 66.5
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.8e-76 288.1 180 76.1
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 6.8e-76 288.1 213 65.7
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 4.1e-73 278.9 212 67.0
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.2e-65 252.7 217 60.4
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 8.1e-61 238.0 141 84.4
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.7e-56 223.0 136 80.9
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 5.1e-55 218.8 232 50.0
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 4.3e-54 215.7 124 85.5
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 5.3e-52 208.8 128 80.5
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.4e-51 205.7 125 80.0
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.2e-48 197.6 122 79.5
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 2.5e-46 189.9 151 66.9
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.3e-42 177.6 124 71.0
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.2e-40 171.0 132 67.4
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.9e-38 163.7 101 79.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 5.6e-38 162.2 117 70.1
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.1e-37 160.2 90 87.8
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.3e-34 151.0 91 81.3
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.1e-33 147.9 202 42.6
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.1e-33 145.2 93 75.3
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.0e-31 139.8 91 70.3
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.5e-30 137.5 164 44.5
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.3e-29 134.4 189 38.6
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.6e-29 134.0 189 38.1
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.8e-29 132.5 215 36.3
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 4.0e-28 129.4 200 41.0
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 9.0e-28 128.3 187 39.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.7e-26 124.0 93 67.7
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.1e-25 121.3 77 74.0
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 4.2e-25 119.4 71 77.5
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.3e-23 113.6 77 70.1
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.7e-23 112.1 194 36.1
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.9e-22 110.5 198 35.9
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 9.7e-22 108.2 170 34.7
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.6e-21 107.5 88 65.9
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 6.9e-20 102.1 63 79.4
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.5e-19 100.9 87 60.9
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.6e-19 100.1 203 34.5
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.4e-19 99.8 69 68.1
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.7e-18 97.4 83 61.4
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 2.2e-18 97.1 61 75.4
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 3.8e-18 96.3 63 77.8
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.0e-15 88.2 64 68.8
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 3.0e-15 86.7 59 74.6
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 3.0e-15 86.7 114 46.5
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.1e-14 84.7 53 77.4
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.5e-14 84.3 46 84.8
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.5e-11 74.3 66 60.6
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 5.9e-11 72.4 68 55.9
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.0e-10 71.6 65 56.9
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.3e-10 71.2 64 57.8
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.7e-10 70.9 57 68.4
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 2.9e-10 70.1 57 66.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 3.8e-10 69.7 59 61.0
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.1e-09 68.2 57 61.4
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 7.2e-09 65.5 39 82.1
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.0e-07 60.1 48 64.6


User provided reference genes

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