Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.6e-122 440.7 212 100.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.7e-96 354.8 256 71.9
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.5e-78 296.6 256 59.8
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.8e-74 283.1 256 60.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.3e-74 282.7 256 58.6
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.5e-73 280.0 256 59.4
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.6e-70 269.2 259 55.2
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.4e-70 268.9 252 55.2
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.0e-66 257.3 212 59.0
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.8e-66 256.5 256 52.3
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.8e-63 246.5 244 56.1
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.8e-62 241.5 256 50.0
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.7e-61 240.0 256 50.0
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.1e-60 237.3 255 47.5
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.2e-60 235.3 256 48.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.3e-60 234.2 264 48.5
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.2e-59 233.8 254 47.2
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.6e-59 233.4 257 50.2
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.1e-59 233.0 256 47.7
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.7e-59 232.6 254 47.2
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.6e-59 231.9 251 51.4
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 6.1e-59 231.5 256 48.0
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.3e-58 230.3 250 50.8
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.0e-58 229.2 256 47.3
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.0e-58 229.2 262 48.5
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.3e-57 225.7 258 45.7
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.3e-57 225.7 203 56.2
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 5.7e-57 224.9 250 50.0
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 5.7e-57 224.9 259 46.7
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 7.4e-57 224.6 263 47.1
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 7.4e-57 224.6 244 50.8
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.2e-56 223.0 250 51.6
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.8e-56 221.9 258 46.9
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 4.8e-56 221.9 258 49.2
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 8.2e-56 221.1 264 48.5
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.1e-55 220.7 254 46.9
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.4e-55 220.3 260 49.2
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 5.3e-55 218.4 260 47.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.3e-55 218.4 256 46.9
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 9.0e-55 217.6 261 48.3
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 9.0e-55 217.6 258 48.1
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.2e-54 217.2 242 51.2
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.7e-54 214.5 250 47.2
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.7e-53 213.4 260 46.9
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.7e-53 213.4 250 46.8
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.8e-53 212.2 250 49.2
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 5.0e-53 211.8 254 47.2
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 5.0e-53 211.8 250 47.2
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.1e-52 210.7 251 48.2
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.4e-52 210.3 256 48.0
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.9e-52 209.9 250 47.2
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.5e-52 209.5 254 47.2
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.5e-52 209.5 226 48.7
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.5e-52 209.5 245 47.8
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.5e-52 209.5 245 47.8
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.2e-52 208.8 250 48.4
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 9.4e-52 207.6 245 47.3
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.1e-51 206.5 250 46.4
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.7e-51 206.1 251 46.6
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 3.6e-51 205.7 249 48.2
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.6e-51 205.7 249 48.2
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 3.6e-51 205.7 250 48.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.1e-51 204.9 250 48.4
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 7.9e-51 204.5 252 45.6
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.8e-50 203.4 251 46.6
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.8e-50 203.4 251 46.6
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.3e-50 203.0 238 49.6
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 2.3e-50 203.0 247 45.7
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 2.3e-50 203.0 219 51.1
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.0e-50 202.6 250 46.0
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.9e-50 202.2 251 45.4
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 6.7e-50 201.4 183 54.6
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.3e-48 197.2 258 44.6
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.7e-48 196.8 250 46.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.2e-48 196.4 248 43.1
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.8e-48 196.1 254 44.1
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.8e-48 196.1 177 55.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 4.8e-48 195.3 250 46.8
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.2e-48 194.5 258 43.4
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.1e-47 194.1 257 44.0
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.4e-47 193.7 249 47.0
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.4e-47 193.7 237 44.3
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.4e-47 193.0 178 54.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 3.1e-47 192.6 245 45.3
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 4.1e-47 192.2 260 45.0
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.3e-47 191.8 252 46.4
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 6.9e-47 191.4 175 53.1
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 9.1e-47 191.0 261 45.2
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-46 190.7 257 43.2
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.6e-46 189.5 190 53.7
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 3.4e-46 189.1 250 44.4
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 5.9e-46 188.3 256 44.1
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 7.7e-46 188.0 252 45.6
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 7.7e-46 188.0 258 43.8
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.0e-45 187.6 255 42.4
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.3e-45 187.2 181 51.9
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.3e-45 187.2 243 43.6
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.3e-45 187.2 297 40.1
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-45 186.8 182 51.6
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 5.0e-45 185.3 255 45.1
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 6.5e-45 184.9 207 47.3
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 6.5e-45 184.9 256 44.9
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 8.5e-45 184.5 262 44.3
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.1e-44 184.1 184 51.6
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.4e-44 183.7 234 44.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.4e-44 183.7 173 53.2
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.2e-44 182.6 256 42.6
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.2e-44 182.2 221 46.6
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 4.2e-44 182.2 256 42.2
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.2e-44 182.2 238 42.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.2e-44 182.2 262 43.1
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 9.4e-44 181.0 218 45.4
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-43 180.6 192 50.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.6e-43 180.3 229 45.4
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.6e-43 180.3 257 43.2
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.6e-43 180.3 257 42.4
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 6.1e-43 178.3 191 50.8
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.9e-42 175.6 222 45.0
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 5.1e-42 175.3 255 42.4
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 8.8e-42 174.5 176 51.7
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.5e-41 173.7 193 49.2
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.5e-41 173.7 222 43.2
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.4e-41 172.2 243 41.2
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 1.3e-40 170.6 250 43.2
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 3.7e-40 169.1 165 54.5
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.1e-39 167.5 165 55.2
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.4e-39 167.2 170 52.9
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 5.3e-39 165.2 246 42.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 6.5e-37 158.3 103 68.9
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.5e-36 157.1 174 49.4
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.8e-34 150.2 173 49.7
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.5e-33 147.1 99 65.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.7e-33 145.2 150 51.3
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.7e-33 145.2 97 69.1
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.8e-32 142.9 190 45.3
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.8e-32 142.9 197 39.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.7e-32 142.5 171 42.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 3.7e-32 142.5 153 51.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.4e-31 139.8 164 43.3
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.3e-31 138.7 266 36.5
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.7e-30 136.3 148 49.3
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.5e-30 135.6 130 54.6
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.3e-29 134.0 164 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.1e-28 131.0 170 41.2
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.5e-28 128.6 171 40.4
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.0e-26 124.4 148 45.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.8e-24 116.3 88 60.2
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 3.5e-22 109.4 99 55.6
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 5.0e-21 105.5 62 77.4
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.5e-21 104.8 67 70.1
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 8.5e-21 104.8 100 56.0
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-15 85.9 131 42.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.6e-11 73.9 39 79.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.8e-10 70.5 59 54.2
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-09 66.6 41 73.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 4.4e-09 65.9 55 50.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 7.5e-09 65.1 56 51.8
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 7.0e-07 58.5 78 42.3


User provided reference genes

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