Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.7e-199 699.1 353 100.0
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 1.1e-177 626.7 353 89.5
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 6.2e-149 531.2 342 78.1
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.4e-148 530.0 342 76.9
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 2.2e-138 496.1 341 73.0
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 3.7e-138 495.4 341 72.7
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 8.3e-138 494.2 342 70.8
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.0e-135 487.3 342 69.9
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 5.1e-135 485.0 341 69.8
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 5.1e-135 485.0 340 70.9
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 1.9e-134 483.0 342 71.1
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 5.6e-134 481.5 335 70.4
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 8.1e-133 477.6 347 67.4
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.1e-132 477.2 337 70.0
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.1e-132 477.2 329 71.4
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 3.1e-132 475.7 328 71.6
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 6.8e-132 474.6 339 70.2
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 6.8e-132 474.6 340 68.8
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 3.4e-131 472.2 347 66.6
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 3.4e-131 472.2 336 68.8
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.2e-130 469.5 329 69.9
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 2.2e-130 469.5 336 67.0
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.8e-130 468.8 348 66.1
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 6.4e-130 468.0 334 69.5
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 6.4e-130 468.0 327 70.0
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 8.4e-130 467.6 341 68.6
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.9e-129 466.5 332 69.3
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.9e-129 466.5 329 69.0
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.9e-129 466.5 327 69.7
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 3.2e-129 465.7 327 69.7
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 4.1e-129 465.3 341 68.3
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 7.1e-129 464.5 333 68.8
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 7.1e-129 464.5 338 66.3
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 2.7e-128 462.6 340 67.1
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.7e-128 462.6 341 67.7
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 2.7e-128 462.6 334 66.8
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 3.5e-128 462.2 338 66.3
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 6.0e-128 461.5 333 67.6
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.7e-127 459.9 341 66.0
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 2.3e-127 459.5 335 67.8
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.0e-127 459.1 341 67.7
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.6e-127 457.6 341 67.4
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-126 457.2 341 67.4
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.5e-126 456.8 341 67.4
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.5e-126 456.8 335 68.1
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 3.3e-126 455.7 337 65.9
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 7.3e-126 454.5 341 65.4
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 9.6e-126 454.1 348 63.8
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.2e-125 453.8 333 65.8
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 3.6e-125 452.2 332 67.5
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 6.2e-125 451.4 346 63.9
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 8.1e-125 451.1 336 65.2
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.1e-124 450.7 337 63.8
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.4e-124 450.3 332 66.9
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 2.4e-124 449.5 332 64.8
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.2e-123 447.2 338 62.7
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 1.5e-123 446.8 332 66.0
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 2.0e-123 446.4 332 66.0
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 2.6e-123 446.0 337 65.3
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 3.4e-123 445.7 330 65.5
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 5.8e-123 444.9 332 65.7
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 9.9e-123 444.1 332 66.0
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 1.7e-122 443.4 337 65.6
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 2.2e-122 443.0 332 63.9
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 2.9e-122 442.6 332 63.0
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 1.1e-121 440.7 336 65.8
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.4e-121 439.5 332 65.7
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 5.4e-121 438.3 344 62.8
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.8e-120 434.5 318 68.6
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 1.7e-119 433.3 334 63.2
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.3e-119 433.0 295 75.3
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.9e-119 432.2 328 65.5
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 6.6e-119 431.4 322 66.5
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 6.6e-119 431.4 350 60.9
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 1.5e-118 430.3 330 63.3
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 1.9e-118 429.9 345 62.9
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 9.6e-118 427.6 345 62.6
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 4.8e-117 425.2 345 62.3
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 9.0e-116 421.0 340 62.1
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 9.0e-116 421.0 335 61.5
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 1.2e-115 420.6 333 61.0
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.5e-115 420.2 341 63.6
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 4.5e-115 418.7 303 67.7
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.3e-114 417.2 326 62.6
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.7e-114 416.8 330 61.2
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 3.8e-114 415.6 330 61.5
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 3.8e-114 415.6 330 61.5
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 4.9e-114 415.2 339 61.4
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 7.1e-113 411.4 342 60.8
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 7.1e-113 411.4 330 61.2
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 7.1e-113 411.4 330 61.2
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 1.4e-108 397.1 325 61.2
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 9.9e-107 391.0 337 59.1
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.2e-104 384.0 334 59.9
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.7e-101 372.5 284 66.9
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 1.4e-97 360.5 320 56.6
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 1.2e-96 357.5 340 53.2
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 6.0e-96 355.1 330 54.5
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 2.3e-95 353.2 257 67.3
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.9e-94 350.1 335 52.5
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 1.4e-92 344.0 344 51.5
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.2e-83 314.3 273 60.1
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.6e-80 302.8 217 67.7
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.9e-66 256.5 192 66.7
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 4.8e-61 239.2 254 48.0
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 6.3e-61 238.8 198 62.1
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.6e-51 207.6 200 60.5
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 4.7e-40 169.5 317 33.8
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 2.2e-37 160.6 153 54.9
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.0e-34 151.8 123 62.6
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 6.4e-21 105.9 106 50.9
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 3.5e-19 100.1 213 31.9
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 3.5e-19 100.1 213 31.9
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 6.0e-19 99.4 186 31.7
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 1.5e-17 94.7 80 58.8
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 7.3e-17 92.4 310 22.9
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.9e-09 67.8 95 46.3
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.3e-09 67.0 124 29.8
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 7.3e-09 65.9 139 25.9
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.6e-08 64.7 124 28.2
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.1e-08 64.3 121 28.1
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 6.2e-08 62.8 124 27.4
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 6.2e-08 62.8 64 50.0
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 8.1e-08 62.4 124 25.0
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 5.2e-07 59.7 210 23.8
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 5.2e-07 59.7 210 23.8
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 5.2e-07 59.7 258 22.1
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 6.9e-07 59.3 101 29.7
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 6.9e-07 59.3 163 25.8
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 6.9e-07 59.3 135 25.2
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 1.5e-06 58.2 152 25.7
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 1.5e-06 58.2 202 22.8
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 1.5e-06 58.2 202 22.8
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 2.6e-06 57.4 226 22.1
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 5.8e-06 56.2 202 22.8
HPP92_002379 Vanilla planifolia HOM05D005862 ORTHO05D007731 5.8e-06 56.2 195 22.1
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 7.6e-06 55.8 133 23.3


User provided reference genes

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