Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 1.8e-262 908.7 453 100.0
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 2.6e-176 622.5 492 68.5
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 4.2e-158 562.0 494 62.6
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.6e-157 560.1 494 62.3
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 7.4e-155 551.2 492 60.8
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 5.9e-144 515.0 499 57.9
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 1.9e-142 510.0 501 56.3
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 6.7e-140 501.5 482 56.8
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 2.8e-138 496.1 501 56.1
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 4.8e-138 495.4 497 56.1
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 1.8e-137 493.4 484 56.2
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 5.3e-137 491.9 496 55.6
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 2.0e-136 490.0 500 55.0
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 3.4e-136 489.2 490 54.5
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 2.2e-135 486.5 484 55.2
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 8.5e-135 484.6 494 55.1
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 8.5e-135 484.6 490 55.7
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 1.4e-134 483.8 490 55.5
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 2.5e-134 483.0 495 54.3
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 2.5e-134 483.0 500 55.6
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 5.5e-134 481.9 497 54.7
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 7.2e-134 481.5 495 54.1
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 7.9e-133 478.0 495 55.2
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 3.0e-132 476.1 495 53.7
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 3.9e-132 475.7 492 54.7
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 3.9e-132 475.7 491 54.0
DCAR_014325 Daucus carota HOM05D004425 ORTHO05D005783 3.9e-132 475.7 493 54.2
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 3.9e-132 475.7 495 55.6
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 8.8e-132 474.6 494 52.4
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 8.8e-132 474.6 489 55.0
MSTRG.972 Avicennia marina HOM05D004425 ORTHO05D005783 4.4e-131 472.2 493 53.3
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 1.3e-130 470.7 511 53.0
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 1.7e-130 470.3 498 51.6
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 3.7e-130 469.2 494 52.2
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 3.7e-130 469.2 496 54.8
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 6.3e-130 468.4 496 54.6
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 6.3e-130 468.4 490 53.3
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 1.1e-129 467.6 491 51.9
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 1.1e-129 467.6 501 53.3
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 1.8e-129 466.8 496 54.8
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.8e-129 466.8 496 54.8
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 1.8e-129 466.8 497 53.1
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 3.1e-129 466.1 480 53.8
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 3.1e-129 466.1 499 52.5
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 4.1e-129 465.7 508 52.4
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 4.1e-129 465.7 486 53.7
CAN.G1183.17 Capsicum annuum HOM05D004425 ORTHO05D005783 1.5e-128 463.8 485 53.8
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 1.5e-128 463.8 490 51.4
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 1.5e-128 463.8 485 53.0
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 1.5e-128 463.8 497 52.7
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 2.0e-128 463.4 491 51.7
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 5.9e-128 461.8 491 53.6
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 5.9e-128 461.8 499 52.7
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 7.7e-128 461.5 528 52.8
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 7.7e-128 461.5 497 53.5
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 1.7e-127 460.3 498 53.0
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 2.9e-127 459.5 492 54.5
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 1.1e-126 457.6 503 52.1
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 2.5e-126 456.4 503 51.9
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 4.2e-126 455.7 491 52.1
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 5.5e-126 455.3 489 53.4
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 8.0e-125 451.4 516 50.6
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 1.4e-124 450.7 495 52.3
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 3.0e-124 449.5 494 50.4
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 8.8e-124 448.0 517 49.9
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 2.6e-123 446.4 493 51.1
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 3.3e-123 446.0 504 51.0
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 4.4e-123 445.7 509 51.1
Potri.005G197900 Populus trichocarpa HOM05D004425 ORTHO05D005783 4.4e-123 445.7 504 51.4
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 1.3e-122 444.1 485 51.8
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 6.3e-122 441.8 498 52.0
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 8.2e-122 441.4 493 49.1
arahy.Tifrunner.gnm1.ann1.64NVCN Arachis hypogaea HOM05D004425 ORTHO05D005783 1.1e-121 441.0 503 51.3
arahy.Tifrunner.gnm1.ann1.J67SBC Arachis hypogaea HOM05D004425 ORTHO05D005783 1.1e-121 441.0 503 51.3
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 1.3e-119 434.1 497 50.7
Oeu061448.2 Olea europaea HOM05D004425 ORTHO05D005783 2.1e-117 426.8 492 52.2
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 8.0e-117 424.9 493 50.7
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 1.5e-115 420.6 492 50.4
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 1.5e-115 420.6 465 51.4
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 2.0e-115 420.2 512 50.0
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 4.4e-115 419.1 493 50.7
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 2.8e-114 416.4 507 49.3
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 1.4e-113 414.1 498 49.0
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 4.1e-113 412.5 462 50.6
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 3.5e-112 409.5 493 49.1
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 4.5e-112 409.1 487 49.3
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 1.5e-110 404.1 496 48.0
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 2.3e-108 396.7 462 49.4
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 6.8e-108 395.2 446 51.6
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 8.8e-108 394.8 462 48.9
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 2.0e-107 393.7 525 45.9
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 5.7e-107 392.1 493 48.5
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 7.5e-107 391.7 502 46.8
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 2.8e-106 389.8 567 43.7
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 3.7e-106 389.4 497 48.3
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 2.4e-105 386.7 426 50.7
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 2.4e-105 386.7 426 50.7
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 9.1e-105 384.8 503 46.7
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 9.1e-105 384.8 572 43.2
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 3.5e-104 382.9 492 46.5
Psat6g190160 Pisum sativum HOM05D004425 ORTHO05D005783 1.7e-103 380.6 460 49.8
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 3.8e-103 379.4 498 46.6
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 4.7e-101 372.5 497 45.9
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 9.2e-97 358.2 491 44.8
Migut.C00138 Erythranthe guttata HOM05D004425 ORTHO05D005783 7.8e-96 355.1 492 43.5
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 1.9e-94 350.5 462 45.5
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 7.3e-94 348.6 353 56.9
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 1.8e-92 344.0 388 51.0
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 1.7e-90 337.4 440 47.5
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 6.4e-90 335.5 451 45.9
unitig_37.g13122 Utricularia gibba HOM05D004425 ORTHO05D005783 1.1e-89 334.7 477 43.8
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 1.3e-82 311.2 417 46.0
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 1.9e-81 307.4 522 40.2
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 2.4e-81 307.0 504 40.1
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 6.6e-79 298.9 434 43.5
SEGI_21205 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 2.3e-76 290.4 419 41.1
ECA232G4004 Erigeron canadensis HOM05D004425 ORTHO05D005783 4.6e-64 249.6 223 61.9
HPP92_022936 Vanilla planifolia HOM05D004425 ORTHO05D005783 1.7e-55 221.1 237 49.8
CARHR291070 Cardamine hirsuta HOM05D004425 ORTHO05D005783 1.3e-53 214.9 240 49.2
ECA232G4000 Erigeron canadensis HOM05D004425 ORTHO05D005783 4.0e-52 209.9 224 51.3
MD10G1037300 Malus domestica HOM05D004425 ORTHO05D005783 8.7e-47 192.2 402 36.3
Mapoly0036s0031 Marchantia polymorpha HOM05D004425 ORTHO05D005783 1.2e-43 181.8 416 33.4
HPP92_022923 Vanilla planifolia HOM05D004425 ORTHO05D005783 2.5e-41 174.1 181 52.5
Pp3c18_13010 Physcomitrium patens HOM05D004425 ORTHO05D005783 3.2e-33 147.1 455 29.5
HPP92_022935 Vanilla planifolia HOM05D004425 ORTHO05D005783 4.6e-32 143.3 164 50.6
Actinidia15613 Actinidia chinensis HOM05D004425 ORTHO05D005783 1.3e-31 141.7 137 57.7
Pp3c14_19380 Physcomitrium patens HOM05D004425 ORTHO05D005783 1.5e-30 138.3 448 29.0
MD10G1036900 Malus domestica HOM05D004425 ORTHO05D005783 1.1e-25 122.1 145 50.3
Pp3c19_21190 Physcomitrium patens HOM05D004425 ORTHO05D005783 5.7e-22 109.8 356 27.2
TPR.G31491 Trifolium pratense HOM05D004425 ORTHO05D005783 5.7e-22 109.8 124 52.4
C03p88340 Brassica napus HOM05D004425 ORTHO05D005783 7.4e-22 109.4 180 42.2
SEGI_25822 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 6.9e-20 102.8 124 39.5
C05p26970 Brassica napus HOM05D004425 ORTHO05D005783 2.9e-18 97.4 243 30.5
C03p29020 Brassica napus HOM05D004425 ORTHO05D024261 1.6e-16 91.7 149 39.6
BolC3t15257H Brassica oleracea HOM05D004425 ORTHO05D024261 1.6e-16 91.7 149 39.6
C03p12860 Brassica napus HOM05D004425 ORTHO05D005783 7.9e-16 89.4 197 35.0
BraA05t21374Z Brassica rapa HOM05D004425 ORTHO05D024261 1.5e-14 85.1 123 41.5
BolC5t31416H Brassica oleracea HOM05D004425 ORTHO05D005783 7.4e-14 82.8 97 47.4
CBR_g39723 Chara braunii HOM05D004425 ORTHO05D005783 7.4e-14 82.8 303 24.4
BcaB05g22179 Brassica carinata HOM05D004425 ORTHO05D005783 1.7e-13 81.6 173 34.7
BolC6t35755H Brassica oleracea HOM05D004425 ORTHO05D005783 8.2e-13 79.3 97 44.3
BcaB07g33352 Brassica carinata HOM05D004425 ORTHO05D005783 4.7e-08 63.5 217 27.6
BcaC05g26824 Brassica carinata HOM05D004425 ORTHO05D005783 4.7e-08 63.5 50 60.0
BcaB08g35329 Brassica carinata HOM05D004425 ORTHO05D005783 1.0e-07 62.4 223 27.8
A05p24870 Brassica napus HOM05D004425 ORTHO05D005783 1.8e-07 61.6 65 50.8
Mapoly0018s0004 Marchantia polymorpha HOM05D004458 ORTHO05D005455 2.3e-07 61.2 209 22.5
QL03p015133 Quercus lobata HOM05D004425 ORTHO05D005783 3.9e-07 60.5 35 82.9
BcaC01g03158 Brassica carinata HOM05D004425 ORTHO05D005783 6.7e-07 59.7 50 56.0
BcaC03g15852 Brassica carinata HOM05D004425 ORTHO05D024261 6.7e-07 59.7 34 79.4
MCO03G484 Micromonas commoda HOM05D004458 ORTHO05D005455 8.8e-07 59.3 263 20.9
SalBow8G3582 Salvia bowleyana HOM05D004458 ORTHO05D005455 8.8e-07 59.3 196 24.5
vmacro07975 Vaccinium macrocarpon HOM05D004458 ORTHO05D005455 8.8e-07 59.3 207 23.2
QL06p013334 Quercus lobata HOM05D004458 ORTHO05D005455 1.1e-06 58.9 243 22.2
BcaC05g28762 Brassica carinata HOM05D004425 ORTHO05D005783 1.5e-06 58.5 34 76.5
Rhsim04G0243100 Rhododendron simsii HOM05D004458 ORTHO05D005455 1.5e-06 58.5 277 23.5
Glyma.17G037700 Glycine max HOM05D004458 ORTHO05D005455 2.0e-06 58.2 299 21.7
Lalb_Chr15g0089031 Lupinus albus HOM05D004458 ORTHO05D005455 2.0e-06 58.2 263 23.2
unitig_22.g6348 Utricularia gibba HOM05D004458 ORTHO05D005455 2.0e-06 58.2 214 24.8
MSTRG.24833 Avicennia marina HOM05D004458 ORTHO05D005455 2.6e-06 57.8 299 21.4
CiPaw.02G072000 Carya illinoinensis HOM05D004458 ORTHO05D005455 2.6e-06 57.8 243 22.2
BcaB04g19483 Brassica carinata HOM05D004425 ORTHO05D005783 4.4e-06 57.0 111 39.6
C01p29530 Brassica napus HOM05D004425 ORTHO05D042383 4.4e-06 57.0 42 64.3
BolC1t02895H Brassica oleracea HOM05D004425 ORTHO05D042383 4.4e-06 57.0 42 64.3
Ciclev10005364m.g Citrus clementina HOM05D004458 ORTHO05D005455 4.4e-06 57.0 216 23.1
Aqoxy2G02626 Aquilegia oxysepala HOM05D004458 ORTHO05D005455 5.7e-06 56.6 254 22.0
PGSC0003DMG400004609 Solanum tuberosum HOM05D004458 ORTHO05D005455 5.7e-06 56.6 274 21.2
arahy.Tifrunner.gnm1.ann1.2F4DQW Arachis hypogaea HOM05D004458 ORTHO05D005455 7.4e-06 56.2 260 21.9
arahy.Tifrunner.gnm1.ann1.NS41IF Arachis hypogaea HOM05D004458 ORTHO05D005455 7.4e-06 56.2 260 21.9
CSS0034217 Camellia sinensis var. sinensis HOM05D004458 ORTHO05D005455 7.4e-06 56.2 296 23.0
PSO210G2951 Papaver somniferum HOM05D004458 ORTHO05D005455 7.4e-06 56.2 196 23.0
PSO761G0404 Papaver somniferum HOM05D004458 ORTHO05D005455 7.4e-06 56.2 196 23.0
Sopen12g033820 Solanum pennellii HOM05D004458 ORTHO05D005455 7.4e-06 56.2 274 21.2
GSVIVG01034940001 Vitis vinifera HOM05D004458 ORTHO05D005455 7.4e-06 56.2 216 23.1
Actinidia18482 Actinidia chinensis HOM05D004458 ORTHO05D005455 9.7e-06 55.8 273 22.7
ClCG05G006720 Citrullus lanatus HOM05D004458 ORTHO05D005455 9.7e-06 55.8 269 21.2
CsaV3_3G015350 Cucumis sativus L. HOM05D004458 ORTHO05D005455 9.7e-06 55.8 200 22.5


User provided reference genes

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