Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01417 Vaccinium macrocarpon HOM05D002601 ORTHO05D022131 5.2e-93 344.4 172 100.0
Rhsim12G0087500 Rhododendron simsii HOM05D002601 ORTHO05D002884 9.0e-45 184.1 127 79.5
Actinidia31995 Actinidia chinensis HOM05D002601 ORTHO05D002884 9.0e-37 157.5 127 68.5
Thecc.01G323900 Theobroma cacao HOM05D002601 ORTHO05D002884 1.9e-23 113.2 120 57.5
Cc10_g11970 Coffea canephora HOM05D002601 ORTHO05D002884 1.1e-21 107.5 103 57.3
Nn3g21920 Nelumbo nucifera HOM05D002601 ORTHO05D002884 9.1e-21 104.4 129 52.7
TWI59G0984 Tripterygium wilfordii HOM05D002601 ORTHO05D002884 2.0e-20 103.2 119 53.8
COL.COLO4_23144 Corchorus olitorius HOM05D002601 ORTHO05D002884 2.6e-20 102.8 102 57.8
Oeu038072.1 Olea europaea HOM05D002601 ORTHO05D002884 2.6e-20 102.8 128 52.3
Sabra14G0084100 Salix brachista HOM05D002601 ORTHO05D002884 7.7e-20 101.3 124 58.9
Duzib138G1823 Durio zibethinus HOM05D002601 ORTHO05D002884 1.0e-19 100.9 100 60.0
Gorai.007G116300 Gossypium raimondii HOM05D002601 ORTHO05D002884 1.0e-19 100.9 119 52.1
Potri.014G114000 Populus trichocarpa HOM05D002601 ORTHO05D002884 1.3e-19 100.5 124 58.1
Lj1A9T42 Lonicera japonica HOM05D002601 ORTHO05D002884 1.7e-19 100.1 71 73.2
QL12p034519 Quercus lobata HOM05D002601 ORTHO05D002884 1.7e-19 100.1 127 49.6
Gohir.A11G103900 Gossypium hirsutum HOM05D002601 ORTHO05D002884 2.9e-19 99.4 109 54.1
Aqoxy2G02514 Aquilegia oxysepala HOM05D002601 ORTHO05D002884 6.5e-19 98.2 82 64.6
CiPaw.07G124400 Carya illinoinensis HOM05D002601 ORTHO05D002884 6.5e-19 98.2 129 50.4
Gohir.D11G108700 Gossypium hirsutum HOM05D002601 ORTHO05D002884 6.5e-19 98.2 109 54.1
Haze_05132 Corylus avellana HOM05D002601 ORTHO05D002884 1.4e-18 97.1 87 65.5
Lsat_1_v5_gn_8_167200 Lactuca sativa HOM05D002601 ORTHO05D002884 1.4e-18 97.1 89 62.9
GSVIVG01028263001 Vitis vinifera HOM05D002601 ORTHO05D002884 2.5e-18 96.3 87 62.1
Ciclev10020151m.g Citrus clementina HOM05D002601 ORTHO05D002884 3.2e-18 95.9 129 49.6
MBI19_g32739_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 5.5e-18 95.1 127 47.2
Cfa004893 Carpinus fangiana HOM05D002601 ORTHO05D002884 7.2e-18 94.7 65 73.8
MBI19_g48072_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 7.2e-18 94.7 147 44.9
Cpa.g.sc41.90 Carica papaya HOM05D002601 ORTHO05D002884 2.1e-17 93.2 67 70.1
Lj1g0008552 Lotus japonicus HOM05D002601 ORTHO05D002884 2.7e-17 92.8 71 67.6
Nitab4.5_0000338g0140 Nicotiana tabacum HOM05D002601 ORTHO05D002884 6.1e-17 91.7 121 48.8
Manes.05G010000 Manihot esculenta HOM05D002601 ORTHO05D002884 7.9e-17 91.3 142 43.0
THA.LOC104802120 Tarenaya hassleriana HOM05D002601 ORTHO05D002884 7.9e-17 91.3 84 63.1
VMungo1383G1635 Vigna mungo HOM05D002601 ORTHO05D002884 7.9e-17 91.3 129 51.9
PGR142G1756 Punica granatum HOM05D002601 ORTHO05D002884 1.4e-16 90.5 124 48.4
Nitab4.5_0004137g0010 Nicotiana tabacum HOM05D002601 ORTHO05D002884 2.3e-16 89.7 121 47.9
CAN.G173.2 Capsicum annuum HOM05D002601 ORTHO05D022131 3.0e-16 89.4 128 47.7
PSO357G0226 Papaver somniferum HOM05D002601 ORTHO05D002884 3.0e-16 89.4 129 43.4
Phvul.001G217500 Phaseolus vulgaris HOM05D002601 ORTHO05D002884 3.9e-16 89.0 81 60.5
Aa31LG1G28380 Aethionema arabicum HOM05D002601 ORTHO05D002884 5.1e-16 88.6 85 56.5
AL4G46510 Arabidopsis lyrata HOM05D002601 ORTHO05D002884 5.1e-16 88.6 81 59.3
AT2G47020 Arabidopsis thaliana HOM05D002601 ORTHO05D002884 6.7e-16 88.2 81 59.3
arahy.Tifrunner.gnm1.ann1.C6NCIG Arachis hypogaea HOM05D002601 ORTHO05D002884 8.8e-16 87.8 70 65.7
HanXRQChr06g0167981 Helianthus annuus HOM05D002601 ORTHO05D002884 8.8e-16 87.8 71 63.4
Glyma.03G223500 Glycine max HOM05D002601 ORTHO05D002884 1.1e-15 87.4 109 51.4
arahy.Tifrunner.gnm1.ann1.5MFX44 Arachis hypogaea HOM05D002601 ORTHO05D002884 2.0e-15 86.7 67 67.2
Carub.0004s2976 Capsella rubella HOM05D002601 ORTHO05D002884 2.6e-15 86.3 82 57.3
ClCG11G013230 Citrullus lanatus HOM05D002601 ORTHO05D002884 4.4e-15 85.5 116 44.0
Sed0003280 Sechium edule HOM05D002601 ORTHO05D002884 4.4e-15 85.5 94 51.1
Prupe.7G036500 Prunus persica HOM05D002601 ORTHO05D002884 5.7e-15 85.1 81 60.5
TPR.G2423 Trifolium pratense HOM05D002601 ORTHO05D022131 5.7e-15 85.1 82 56.1
FvH4_6g25260 Fragaria vesca HOM05D002601 ORTHO05D002884 9.7e-15 84.3 93 47.3
CsaV3_5G029740 Cucumis sativus L. HOM05D002601 ORTHO05D002884 1.3e-14 84.0 81 56.8
Thhalv10001468m.g Eutrema salsugineum HOM05D002601 ORTHO05D002884 1.7e-14 83.6 80 58.8
ATR0796G161 Amborella trichopoda HOM05D002601 ORTHO05D002884 2.2e-14 83.2 86 54.7
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 2.8e-14 82.8 82 58.5
Solyc03g078020.4 Solanum lycopersicum HOM05D002601 ORTHO05D002884 2.8e-14 82.8 89 55.1
Sopen03g020430 Solanum pennellii HOM05D002601 ORTHO05D002884 2.8e-14 82.8 89 55.1
EL10As5g23616 Beta vulgaris HOM05D002601 ORTHO05D002884 3.7e-14 82.4 67 62.7
BolC4t21732H Brassica oleracea HOM05D002601 ORTHO05D002884 3.7e-14 82.4 93 54.8
PSO170G2438 Papaver somniferum HOM05D002601 ORTHO05D002884 3.7e-14 82.4 63 63.5
A05p00780 Brassica napus HOM05D002601 ORTHO05D002884 6.3e-14 81.6 67 64.2
C04p00940 Brassica napus HOM05D002601 ORTHO05D002884 6.3e-14 81.6 67 64.2
BraA05t19081Z Brassica rapa HOM05D002601 ORTHO05D002884 6.3e-14 81.6 67 64.2
MELO3C011817.2 Cucumis melo HOM05D002601 ORTHO05D002884 6.3e-14 81.6 80 55.0
Sp4g29020 Schrenkiella parvula HOM05D002601 ORTHO05D002884 6.3e-14 81.6 81 58.0
AUR62024555 Chenopodium quinoa HOM05D002601 ORTHO05D002884 1.1e-13 80.9 91 48.4
AUR62011696 Chenopodium quinoa HOM05D002601 ORTHO05D002884 1.8e-13 80.1 67 58.2
Medtr7g110570 Medicago truncatula HOM05D002601 ORTHO05D002884 1.8e-13 80.1 67 56.7
SalBow2G3536 Salvia bowleyana HOM05D002601 ORTHO05D002884 1.8e-13 80.1 85 50.6
Psat3g017240 Pisum sativum HOM05D002601 ORTHO05D002884 4.1e-13 79.0 81 51.9
CSS0017992 Camellia sinensis var. sinensis HOM05D002601 ORTHO05D022131 6.9e-13 78.2 55 72.7
FAN05G1271 Fragaria x ananassa HOM05D002601 ORTHO05D002884 9.1e-13 77.8 100 50.0
RcHm_v2.0_Chr2g0125161 Rosa chinensis HOM05D002601 ORTHO05D002884 1.5e-12 77.0 97 47.4
CANSAT25G2156 Cannabis sativa HOM05D002601 ORTHO05D002884 4.5e-12 75.5 67 56.7
Zm00001eb417410 Zea mays HOM05D002601 ORTHO05D002884 5.9e-12 75.1 66 57.6
Hma1.2p1_0226F.1_g095660 Hydrangea macrophylla HOM05D002601 ORTHO05D002884 1.0e-11 74.3 90 51.1
HPP92_021932 Vanilla planifolia HOM05D002601 ORTHO05D002884 1.7e-11 73.6 62 59.7
FAN09G3341 Fragaria x ananassa HOM05D002601 ORTHO05D002884 2.9e-11 72.8 86 51.2
Zm00001eb417430 Zea mays HOM05D002601 ORTHO05D002884 2.9e-11 72.8 66 56.1
Cfa004894 Carpinus fangiana HOM05D002601 ORTHO05D002884 3.8e-11 72.4 67 65.7
Migut.N00922 Erythranthe guttata HOM05D002601 ORTHO05D002884 5.0e-11 72.0 65 50.8
Migut.O00616 Erythranthe guttata HOM05D002601 ORTHO05D002884 5.0e-11 72.0 65 50.8
TAR365G0121 Trochodendron aralioides HOM05D002601 ORTHO05D002884 1.9e-10 70.1 48 72.9
SGA_v2.0_scaffold58G20339 Striga asiatica HOM05D002601 ORTHO05D002884 2.5e-10 69.7 65 52.3
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.2e-10 68.9 51 64.7
DCAR_018245 Daucus carota HOM05D002601 ORTHO05D002884 5.5e-10 68.6 59 61.0
Cpa.g.sc41.93 Carica papaya HOM05D002601 ORTHO05D022131 1.2e-09 67.4 56 69.6
SHI06233 Sapria himalayana HOM05D002601 ORTHO05D002884 1.1e-07 60.8 66 53.0
MD05G1002600 Malus domestica HOM05D002601 ORTHO05D002884 2.0e-07 60.1 54 59.3
unitig_22.g5838 Utricularia gibba HOM05D002601 ORTHO05D002884 2.6e-07 59.7 68 42.6
arahy.Tifrunner.gnm1.ann1.ZJVA8M Arachis hypogaea HOM05D002601 ORTHO05D002884 2.2e-06 56.6 44 65.9


User provided reference genes

Program Settings