Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.5e-216 756.1 440 100.0
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 1.6e-202 709.5 435 96.1
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 3.1e-190 668.7 435 91.0
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 9.0e-190 667.2 435 90.8
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.9e-188 662.1 435 90.8
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 3.5e-186 655.2 435 84.4
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.0e-185 653.7 435 88.5
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.7e-185 652.9 435 88.0
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 5.6e-184 647.9 435 87.4
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.3e-183 646.7 435 88.5
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 2.1e-183 646.0 435 88.0
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 3.6e-183 645.2 435 82.8
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 3.6e-183 645.2 435 87.1
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 4.8e-183 644.8 435 89.0
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.8e-182 642.9 435 83.0
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.8e-182 642.9 435 88.5
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 2.4e-182 642.5 435 88.0
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 3.1e-182 642.1 435 83.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 4.0e-182 641.7 435 88.5
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 4.0e-182 641.7 435 87.6
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 6.9e-182 641.0 435 87.8
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 9.0e-182 640.6 433 88.0
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 9.0e-182 640.6 435 87.6
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 1.2e-181 640.2 435 87.8
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 3.4e-181 638.6 435 87.1
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 5.8e-181 637.9 435 82.8
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 7.6e-181 637.5 435 86.7
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 9.9e-181 637.1 435 87.4
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 1.3e-180 636.7 435 88.5
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.3e-180 636.7 435 86.4
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 2.2e-180 636.0 455 74.5
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 3.8e-180 635.2 435 86.0
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 4.9e-180 634.8 433 87.5
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 4.9e-180 634.8 435 86.0
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 6.4e-180 634.4 435 86.9
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.4e-180 634.4 433 84.1
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.1e-179 633.6 435 86.7
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.1e-179 633.6 435 87.1
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.1e-179 633.6 435 87.1
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.4e-179 633.3 435 87.1
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.4e-179 633.3 433 82.9
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.4e-179 633.3 435 87.1
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.4e-179 633.3 435 86.0
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.4e-179 633.3 435 85.7
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.9e-179 632.9 435 86.2
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.9e-179 632.9 435 87.1
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 3.2e-179 632.1 435 86.7
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 7.1e-179 630.9 433 83.4
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 2.7e-178 629.0 433 87.1
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 4.6e-178 628.2 435 85.1
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 6.0e-178 627.9 435 86.4
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 6.0e-178 627.9 435 86.2
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 7.9e-178 627.5 428 87.6
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.0e-177 627.1 435 84.4
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.3e-177 625.9 430 87.2
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 2.3e-177 625.9 435 81.4
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 3.0e-177 625.5 435 85.1
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 3.0e-177 625.5 435 80.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 6.7e-177 624.4 435 84.8
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.5e-176 623.2 435 86.0
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.9e-176 622.9 435 86.7
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 4.3e-176 621.7 435 85.5
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 5.6e-176 621.3 435 85.7
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 5.6e-176 621.3 435 84.6
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.3e-175 620.2 435 84.1
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.6e-175 619.8 435 85.3
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.1e-175 619.4 438 85.6
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.1e-175 619.4 431 87.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 6.2e-175 617.8 429 86.2
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 8.1e-175 617.5 439 84.5
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.8e-174 616.3 435 78.9
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 3.1e-174 615.5 435 85.1
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 4.0e-174 615.1 435 84.1
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 9.0e-174 614.0 435 84.6
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.2e-173 613.6 435 83.2
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.5e-173 613.2 435 78.2
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 4.5e-173 611.7 435 85.5
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 4.5e-173 611.7 435 84.4
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 9.9e-173 610.5 435 78.2
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 2.2e-172 609.4 434 79.5
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.9e-172 609.0 435 83.9
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 3.8e-172 608.6 435 84.8
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 3.8e-172 608.6 435 83.7
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 4.9e-172 608.2 435 79.1
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 8.4e-172 607.4 458 77.5
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.4e-171 606.7 435 81.6
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 3.2e-171 605.5 435 84.8
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.7e-170 602.4 435 84.6
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.5e-168 596.7 435 77.7
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.5e-168 596.7 435 77.7
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.9e-168 596.3 434 77.9
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 2.5e-168 595.9 435 82.3
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 5.6e-168 594.7 435 79.8
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 3.7e-167 592.0 435 79.5
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 4.8e-167 591.7 433 79.7
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 4.8e-167 591.7 433 79.7
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.2e-164 582.8 435 78.9
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 5.5e-163 578.2 451 76.7
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.7e-162 575.9 435 76.6
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 4.6e-162 575.1 456 77.2
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 7.4e-160 567.8 435 80.2
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.8e-159 565.1 435 71.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 8.2e-159 564.3 478 73.2
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 8.2e-159 564.3 435 78.4
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 3.1e-158 562.4 412 84.2
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 9.0e-158 560.8 446 80.5
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 9.0e-158 560.8 435 72.4
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 2.5e-155 552.7 435 76.6
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 6.7e-153 544.7 473 64.7
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.4e-150 536.2 385 87.5
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 7.7e-149 531.2 389 85.9
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 4.2e-123 445.7 322 80.1
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 2.2e-119 433.3 435 66.9
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 5.4e-118 428.7 434 63.4
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 2.8e-98 363.2 235 85.5
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 3.6e-98 362.8 190 92.1
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 3.1e-89 333.2 175 94.3
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 6.4e-79 298.9 257 75.1
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.9e-75 287.3 264 83.3
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 9.9e-72 275.0 306 52.9
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 6.0e-69 265.8 177 81.9
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 4.9e-63 246.1 131 96.2
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 4.9e-63 246.1 131 96.2
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 4.0e-57 226.5 439 46.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 3.8e-47 193.4 150 64.0
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.5e-45 186.8 99 84.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 4.8e-42 176.4 317 39.4
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.1e-37 161.0 295 33.9
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.8e-36 157.9 80 90.0
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-35 155.2 95 71.6
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 1.1e-22 112.1 86 70.9
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.6e-21 108.2 56 87.5
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.6e-19 100.9 55 94.5
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 3.7e-18 97.1 56 73.2
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 3.7e-18 97.1 57 71.9
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.1e-17 94.0 47 100.0
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 7.0e-17 92.8 54 87.0
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.7e-16 90.9 133 41.4
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.0e-15 89.0 51 78.4
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 1.0e-15 89.0 75 57.3
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 1.0e-15 89.0 75 57.3
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.9e-14 84.7 51 74.5
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 8.0e-13 79.3 105 45.7
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 3.0e-12 77.4 85 55.3
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 9.8e-11 72.4 36 83.3
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 7.0e-09 66.2 134 58.2
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 3.5e-08 63.9 67 52.2
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.9e-06 58.2 29 82.8
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 7.2e-06 56.2 69 55.1


User provided reference genes

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