Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00912 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 2.1e-91 339.0 167 100.0
vmacro23123 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 7.9e-38 161.0 113 71.7
vmacro15280 Vaccinium macrocarpon HOM05D000205 ORTHO05D000438 1.3e-19 100.5 58 91.4
Rhsim05G0097700 Rhododendron simsii HOM05D000686 ORTHO05D000512 1.2e-14 84.0 56 66.1
CiPaw.03G011600 Carya illinoinensis HOM05D000686 ORTHO05D000512 1.4e-13 80.5 64 56.2
Hma1.2p1_2353F.1_g320510 Hydrangea macrophylla HOM05D000686 ORTHO05D000512 1.4e-13 80.5 56 62.5
TAR376G0721 Trochodendron aralioides HOM05D000686 ORTHO05D000512 1.8e-13 80.1 55 63.6
PSO210G0289 Papaver somniferum HOM05D000686 ORTHO05D000512 2.3e-13 79.7 55 60.0
PSO761G0316 Papaver somniferum HOM05D000686 ORTHO05D000512 2.3e-13 79.7 55 60.0
Thecc.04G053600 Theobroma cacao HOM05D000686 ORTHO05D000512 2.3e-13 79.7 57 59.6
Duzib133G0167 Durio zibethinus HOM05D000686 ORTHO05D000512 6.7e-13 78.2 60 60.0
PSO761G0137 Papaver somniferum HOM05D000686 ORTHO05D000512 6.7e-13 78.2 56 58.9
Eucgr.F04098 Eucalyptus grandis HOM05D000686 ORTHO05D000512 8.8e-13 77.8 56 60.7
Thecc.08G188900 Theobroma cacao HOM05D000686 ORTHO05D000512 1.2e-12 77.4 56 55.4
PSO210G3394 Papaver somniferum HOM05D000686 ORTHO05D000512 2.6e-12 76.3 56 58.9
QL04p024240 Quercus lobata HOM05D000686 ORTHO05D000512 2.6e-12 76.3 56 57.1
RcHm_v2.0_Chr1g0327491 Rosa chinensis HOM05D000686 ORTHO05D000512 2.6e-12 76.3 55 58.2
CSS0003685 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 3.3e-12 75.9 56 58.9
FAN14G2680 Fragaria x ananassa HOM05D000686 ORTHO05D004145 3.3e-12 75.9 97 39.2
RcHm_v2.0_Chr2g0087851 Rosa chinensis HOM05D000686 ORTHO05D000512 3.3e-12 75.9 55 58.2
FAN02G3399 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.3e-11 73.9 56 57.1
RcHm_v2.0_Chr1g0327481 Rosa chinensis HOM05D000686 ORTHO05D000512 1.3e-11 73.9 55 58.2
Solyc04g025650.3 Solanum lycopersicum HOM05D000686 ORTHO05D000512 1.3e-11 73.9 63 49.2
Sopen04g013330 Solanum pennellii HOM05D000686 ORTHO05D000512 1.3e-11 73.9 63 49.2
TWI81G0232 Tripterygium wilfordii HOM05D000686 ORTHO05D000512 1.3e-11 73.9 56 51.8
Cpa.g.sc21.243 Carica papaya HOM05D000686 ORTHO05D000512 1.7e-11 73.6 57 56.1
Eucgr.K01334 Eucalyptus grandis HOM05D000686 ORTHO05D000512 1.7e-11 73.6 58 56.9
THA.LOC104821770 Tarenaya hassleriana HOM05D000686 ORTHO05D000512 1.7e-11 73.6 56 57.1
PSO339G0195 Papaver somniferum HOM05D000686 ORTHO05D000512 2.2e-11 73.2 55 56.4
vmacro00910 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 2.2e-11 73.2 56 57.1
FAN03G2931 Fragaria x ananassa HOM05D000686 ORTHO05D000512 2.8e-11 72.8 55 60.0
Ca_00242_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 3.7e-11 72.4 55 54.5
Ca_30763_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 3.7e-11 72.4 55 54.5
Duzib177G1014 Durio zibethinus HOM05D000686 ORTHO05D000512 3.7e-11 72.4 56 51.8
PSO384G4268 Papaver somniferum HOM05D000686 ORTHO05D000512 3.7e-11 72.4 55 54.5
Duzib177G1071 Durio zibethinus HOM05D000686 ORTHO05D000512 4.8e-11 72.0 56 50.0
Manes.12G054600 Manihot esculenta HOM05D000686 ORTHO05D000512 4.8e-11 72.0 56 53.6
FvH4_7g03910 Fragaria vesca HOM05D000686 ORTHO05D000512 6.3e-11 71.6 55 58.2
FAN06G0078 Fragaria x ananassa HOM05D000686 ORTHO05D000512 6.3e-11 71.6 55 58.2
TWI74G0661 Tripterygium wilfordii HOM05D000686 ORTHO05D000512 6.3e-11 71.6 55 54.5
Cpa.g.sc21.240 Carica papaya HOM05D000686 ORTHO05D000512 8.2e-11 71.2 57 54.4
Cpa.g.sc21.242 Carica papaya HOM05D000686 ORTHO05D000512 8.2e-11 71.2 57 54.4
VMungo1127G1623 Vigna mungo HOM05D000686 ORTHO05D000512 8.2e-11 71.2 55 56.4
FAN09G3108 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.1e-10 70.9 61 49.2
MD10G1041900 Malus domestica HOM05D000686 ORTHO05D000512 1.4e-10 70.5 55 52.7
vmacro00913 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 1.4e-10 70.5 55 56.4
vmacro23124 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 1.4e-10 70.5 55 56.4
Lalb_Chr19g0140401 Lupinus albus HOM05D000686 ORTHO05D000512 1.8e-10 70.1 56 51.8
MD10G1042000 Malus domestica HOM05D000686 ORTHO05D000512 1.8e-10 70.1 55 52.7
Sp7g14100 Schrenkiella parvula HOM05D000686 ORTHO05D000512 1.8e-10 70.1 56 55.4
DCAR_010121 Daucus carota HOM05D000686 ORTHO05D000512 2.4e-10 69.7 56 51.8
PSO761G0599 Papaver somniferum HOM05D000686 ORTHO05D000512 2.4e-10 69.7 55 56.4
Haze_14020 Corylus avellana HOM05D000686 ORTHO05D000512 3.1e-10 69.3 56 53.6
Glyma.09G233400 Glycine max HOM05D000686 ORTHO05D000512 3.1e-10 69.3 55 52.7
vmacro23121 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 3.1e-10 69.3 56 53.6
EL10Ac9g22927 Beta vulgaris HOM05D000686 ORTHO05D000512 4.1e-10 68.9 61 50.8
DCAR_014050 Daucus carota HOM05D000686 ORTHO05D000512 4.1e-10 68.9 56 55.4
Medtr4g035655 Medicago truncatula HOM05D000686 ORTHO05D000512 4.1e-10 68.9 55 50.9
Rhsim12G0041700 Rhododendron simsii HOM05D000686 ORTHO05D000512 4.1e-10 68.9 56 55.4
arahy.Tifrunner.gnm1.ann1.WY504Z Arachis hypogaea HOM05D000686 ORTHO05D000512 5.3e-10 68.6 55 50.9
Glyma.12G003400 Glycine max HOM05D000686 ORTHO05D000512 5.3e-10 68.6 55 50.9
Nitab4.5_0000031g0280 Nicotiana tabacum HOM05D000686 ORTHO05D000512 5.3e-10 68.6 57 49.1
Nitab4.5_0000925g0120 Nicotiana tabacum HOM05D000686 ORTHO05D000512 5.3e-10 68.6 57 49.1
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 5.3e-10 68.6 57 49.1
Phvul.011G004100 Phaseolus vulgaris HOM05D000686 ORTHO05D000512 5.3e-10 68.6 55 52.7
Prupe.2G043900 Prunus persica HOM05D000686 ORTHO05D000512 5.3e-10 68.6 55 54.5
Prupe.8G046000 Prunus persica HOM05D000686 ORTHO05D000512 5.3e-10 68.6 56 53.6
arahy.Tifrunner.gnm1.ann1.SQW77Y Arachis hypogaea HOM05D000686 ORTHO05D000512 7.0e-10 68.2 55 50.9
Cpa.g.sc21.241 Carica papaya HOM05D000686 ORTHO05D000512 7.0e-10 68.2 57 50.9
vmacro01140 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 7.0e-10 68.2 58 55.2
Nn5g27170 Nelumbo nucifera HOM05D000686 ORTHO05D000512 9.1e-10 67.8 55 52.7
PGR142G1815 Punica granatum HOM05D000686 ORTHO05D000512 9.1e-10 67.8 55 54.5
Haze_14019 Corylus avellana HOM05D000686 ORTHO05D000512 1.2e-09 67.4 55 52.7
Lj7A415G59 Lonicera japonica HOM05D000686 ORTHO05D000512 1.2e-09 67.4 56 55.4
MD07G1043700 Malus domestica HOM05D000686 ORTHO05D000512 1.2e-09 67.4 55 56.4
AUR62015214 Chenopodium quinoa HOM05D000686 ORTHO05D000512 1.6e-09 67.0 56 48.2
COL.COLO4_05360 Corchorus olitorius HOM05D000686 ORTHO05D000512 1.6e-09 67.0 51 54.9
Peaxi162Scf00314g00116 Petunia axillaris HOM05D000686 ORTHO05D000512 1.6e-09 67.0 56 51.8
QL11p044650 Quercus lobata HOM05D000686 ORTHO05D000512 1.6e-09 67.0 57 49.1
Actinidia01534 Actinidia chinensis HOM05D000686 ORTHO05D000512 2.0e-09 66.6 56 51.8
Oeu028612.1 Olea europaea HOM05D000686 ORTHO05D000512 2.0e-09 66.6 60 46.7
AL7G39570 Arabidopsis lyrata HOM05D000686 ORTHO05D000512 2.7e-09 66.2 56 53.6
Gorai.007G187400 Gossypium raimondii HOM05D000686 ORTHO05D000512 2.7e-09 66.2 57 52.6
vmacro00904 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 2.7e-09 66.2 56 53.6
QL11p044636 Quercus lobata HOM05D000686 ORTHO05D000512 3.5e-09 65.9 59 47.5
Cc10_g16200 Coffea canephora HOM05D000686 ORTHO05D000512 4.5e-09 65.5 56 48.2
TPR.G15127 Trifolium pratense HOM05D000686 ORTHO05D000512 4.5e-09 65.5 55 49.1
AL7G39580 Arabidopsis lyrata HOM05D000686 ORTHO05D000512 5.9e-09 65.1 57 49.1
DCAR_010119 Daucus carota HOM05D000686 ORTHO05D000512 5.9e-09 65.1 55 52.7
Thhalv10025403m.g Eutrema salsugineum HOM05D000686 ORTHO05D000512 5.9e-09 65.1 65 47.7
Gohir.A13G122300 Gossypium hirsutum HOM05D000686 ORTHO05D000512 5.9e-09 65.1 56 42.9
Lj7A415G61 Lonicera japonica HOM05D000686 ORTHO05D000512 5.9e-09 65.1 56 53.6
TPR.G871 Trifolium pratense HOM05D000686 ORTHO05D000512 5.9e-09 65.1 55 49.1
BolC8t48310H Brassica oleracea HOM05D000686 ORTHO05D000512 7.7e-09 64.7 56 50.0
Cfa021497 Carpinus fangiana HOM05D000686 ORTHO05D000512 7.7e-09 64.7 57 54.4
CiPaw.04G008000 Carya illinoinensis HOM05D000686 ORTHO05D000512 7.7e-09 64.7 56 46.4
AUR62015216 Chenopodium quinoa HOM05D000686 ORTHO05D000512 7.7e-09 64.7 56 48.2
CARHR290240 Cardamine hirsuta HOM05D000686 ORTHO05D000512 1.0e-08 64.3 55 49.1
Eucgr.F04127 Eucalyptus grandis HOM05D000686 ORTHO05D000512 1.0e-08 64.3 57 54.4
Hund22433 Selenicereus undatus HOM05D000686 ORTHO05D000512 1.0e-08 64.3 56 46.4
Sc21g0004440 Simmondsia chinensis HOM05D000686 ORTHO05D000512 1.3e-08 63.9 56 48.2
DCAR_010120 Daucus carota HOM05D000686 ORTHO05D000512 1.7e-08 63.5 55 49.1
Gohir.D13G124400 Gossypium hirsutum HOM05D000686 ORTHO05D000512 1.7e-08 63.5 56 41.1
Gorai.013G139000 Gossypium raimondii HOM05D000686 ORTHO05D000512 1.7e-08 63.5 56 41.1
Rhsim12G0000700 Rhododendron simsii HOM05D000686 ORTHO05D000512 1.7e-08 63.5 55 47.3
MBI03_g18640_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 2.9e-08 62.8 55 50.9
Sp7g14090 Schrenkiella parvula HOM05D000686 ORTHO05D000512 2.9e-08 62.8 65 46.2
Carub.0007s2591 Capsella rubella HOM05D000686 ORTHO05D000512 3.8e-08 62.4 56 50.0
vmacro17236 Vaccinium macrocarpon HOM05D000238 ORTHO05D003439 3.8e-08 62.4 37 86.5
Nitab4.5_0000031g0070 Nicotiana tabacum HOM05D000686 ORTHO05D000512 5.0e-08 62.0 57 45.6
A03p49300 Brassica napus HOM05D000686 ORTHO05D000512 6.5e-08 61.6 65 46.2
BolC7t45264H Brassica oleracea HOM05D000686 ORTHO05D000512 6.5e-08 61.6 65 44.6
Carub.0007s2592 Capsella rubella HOM05D000686 ORTHO05D000512 6.5e-08 61.6 55 45.5
AUR62017680 Chenopodium quinoa HOM05D000686 ORTHO05D000512 6.5e-08 61.6 56 48.2
Ah.01g001610 Amaranthus hybridus HOM05D000686 ORTHO05D000512 8.5e-08 61.2 56 50.0
Ah.07g198420 Amaranthus hybridus HOM05D000686 ORTHO05D000512 8.5e-08 61.2 56 50.0
AT4G15760 Arabidopsis thaliana HOM05D000686 ORTHO05D000512 8.5e-08 61.2 65 43.1
BraA03t14031Z Brassica rapa HOM05D000686 ORTHO05D000512 8.5e-08 61.2 65 46.2
BraA08t33184Z Brassica rapa HOM05D000686 ORTHO05D000512 8.5e-08 61.2 56 48.2
Thhalv10025376m.g Eutrema salsugineum HOM05D000686 ORTHO05D000512 8.5e-08 61.2 56 48.2
HanXRQChr12g0369191 Helianthus annuus HOM05D000686 ORTHO05D000512 8.5e-08 61.2 56 50.0
MBI03_g28852_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 8.5e-08 61.2 55 50.9
BcaC06g33451 Brassica carinata HOM05D000686 ORTHO05D000512 1.1e-07 60.8 65 44.6
C07p47370 Brassica napus HOM05D000686 ORTHO05D000512 1.1e-07 60.8 65 44.6
Oeu028613.1 Olea europaea HOM05D000686 ORTHO05D000512 1.1e-07 60.8 60 43.3
Lsat_1_v5_gn_1_24741 Lactuca sativa HOM05D000686 ORTHO05D000512 1.5e-07 60.5 56 48.2
Aa31LG10G6350 Aethionema arabicum HOM05D000686 ORTHO05D000512 1.9e-07 60.1 55 47.3
BcaC06g32959 Brassica carinata HOM05D000686 ORTHO05D000512 1.9e-07 60.1 65 44.6
Sc03g0010900 Simmondsia chinensis HOM05D000686 ORTHO05D000512 1.9e-07 60.1 60 41.7
Gohir.D11G174850 Gossypium hirsutum HOM05D000686 ORTHO05D000512 2.5e-07 59.7 53 50.9
HanXRQChr12g0369161 Helianthus annuus HOM05D000686 ORTHO05D000512 2.5e-07 59.7 56 48.2
EL10Ac4g08019 Beta vulgaris HOM05D000686 ORTHO05D000512 3.2e-07 59.3 55 45.5
Sc06g0001300 Simmondsia chinensis HOM05D000686 ORTHO05D000512 3.2e-07 59.3 58 44.8
Lsat_1_v5_gn_1_24721 Lactuca sativa HOM05D000686 ORTHO05D000512 4.2e-07 58.9 60 45.0
BcaB04g18324 Brassica carinata HOM05D000686 ORTHO05D000512 5.5e-07 58.5 56 46.4
HanXRQChr04g0102601 Helianthus annuus HOM05D000686 ORTHO05D000512 5.5e-07 58.5 57 45.6
MBI03_g47691_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 5.5e-07 58.5 64 45.3
ATR1089G141 Amborella trichopoda HOM05D000686 ORTHO05D000512 9.4e-07 57.8 55 47.3
CARHR290250 Cardamine hirsuta HOM05D000686 ORTHO05D000512 1.2e-06 57.4 56 46.4
DCAR_001851 Daucus carota HOM05D000686 ORTHO05D000512 1.2e-06 57.4 55 45.5
Lj3g0020833 Lotus japonicus HOM05D000686 ORTHO05D000512 1.2e-06 57.4 55 47.3
HanXRQChr04g0102581 Helianthus annuus HOM05D000686 ORTHO05D000512 1.6e-06 57.0 57 42.1
BcaC07g37929 Brassica carinata HOM05D000686 ORTHO05D000512 2.1e-06 56.6 56 46.4
A08p11940 Brassica napus HOM05D000686 ORTHO05D000512 2.1e-06 56.6 56 46.4
HanXRQChr12g0369211 Helianthus annuus HOM05D000686 ORTHO05D000512 2.1e-06 56.6 55 47.3
Os02g0471300 Oryza sativa ssp. japonica HOM05D000686 ORTHO05D000512 2.1e-06 56.6 61 45.9
Lj7A414T45 Lonicera japonica HOM05D000686 ORTHO05D000512 3.6e-06 55.8 55 41.8
HanXRQChr09g0238391 Helianthus annuus HOM05D000686 ORTHO05D000512 4.7e-06 55.5 55 47.3
THA.LOC104802571 Tarenaya hassleriana HOM05D000686 ORTHO05D000512 8.0e-06 54.7 56 41.1


User provided reference genes

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