Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 0.0e+00 1104.0 559 100.0
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 1.4e-243 846.3 605 72.4
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 2.3e-238 828.9 603 71.0
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 9.2e-232 807.0 607 69.0
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.6e-231 804.7 607 68.9
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 1.0e-230 803.5 605 68.9
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.6e-228 796.2 604 67.2
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.8e-227 792.7 604 67.4
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 2.3e-227 792.3 604 67.2
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 2.3e-227 792.3 615 67.3
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 4.0e-227 791.6 607 67.1
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 1.2e-226 790.0 601 67.4
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 7.5e-226 787.3 605 67.4
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 1.9e-224 782.7 602 66.8
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 5.4e-224 781.2 604 65.9
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 1.2e-223 780.0 604 66.2
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 2.7e-223 778.9 604 66.2
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 1.0e-222 776.9 604 66.4
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 1.3e-222 776.5 605 65.8
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 3.0e-222 775.4 605 65.6
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 6.6e-222 774.2 605 65.3
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 8.6e-222 773.9 604 65.7
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 1.5e-221 773.1 606 64.9
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 1.9e-221 772.7 641 63.7
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 3.3e-221 771.9 604 64.7
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 1.2e-220 770.0 605 65.0
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 3.6e-220 768.5 605 64.6
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 6.2e-220 767.7 601 65.7
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.8e-219 766.1 654 62.8
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 6.8e-219 764.2 604 64.2
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 8.9e-219 763.8 578 67.1
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.5e-218 763.1 600 66.2
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 1.5e-218 763.1 604 65.1
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 2.0e-218 762.7 603 64.5
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 2.6e-218 762.3 602 65.3
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 3.4e-218 761.9 602 65.6
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 1.3e-217 760.0 602 64.6
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.2e-217 759.2 603 65.2
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 3.8e-217 758.4 605 64.1
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 4.9e-217 758.1 604 64.1
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 6.4e-217 757.7 606 64.5
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.1e-216 756.9 604 63.9
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 1.4e-216 756.5 602 64.5
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 5.4e-216 754.6 604 64.2
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 1.2e-215 753.4 600 63.5
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 2.1e-215 752.7 600 63.7
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 1.0e-214 750.4 600 63.8
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 1.3e-214 750.0 644 62.0
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 1.7e-214 749.6 600 63.7
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 3.9e-214 748.4 604 64.4
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 8.7e-214 747.3 600 63.5
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 1.1e-213 746.9 600 63.2
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 5.6e-213 744.6 606 65.3
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 1.2e-212 743.4 606 63.4
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 2.1e-212 742.7 625 62.9
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.1e-212 742.7 602 64.3
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 2.1e-212 742.7 600 63.0
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 3.6e-212 741.9 600 63.5
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.6e-212 741.9 602 64.5
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 4.7e-212 741.5 564 67.6
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 8.1e-212 740.7 600 63.0
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 8.1e-212 740.7 605 65.6
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.4e-211 740.0 627 63.3
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-209 733.4 602 63.8
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-209 733.4 602 63.8
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 3.8e-209 731.9 604 61.6
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 8.4e-209 730.7 601 62.6
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 3.9e-206 721.8 600 62.3
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 3.9e-206 721.8 600 62.3
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 6.6e-206 721.1 600 62.2
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 6.6e-206 721.1 604 62.9
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 1.1e-205 720.3 563 65.9
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 7.3e-205 717.6 605 63.1
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 3.6e-204 715.3 591 62.3
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 6.2e-204 714.5 576 64.8
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 1.8e-203 713.0 620 60.3
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 1.9e-200 703.0 607 60.3
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-199 700.3 603 62.2
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 1.3e-198 696.8 602 58.3
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 6.7e-198 694.5 550 65.8
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 4.3e-197 691.8 618 61.8
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 4.8e-196 688.3 602 57.5
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.2e-194 683.7 612 60.6
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 1.2e-194 683.7 606 61.7
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 2.0e-194 682.9 640 58.9
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 3.2e-192 675.6 604 58.9
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.5e-192 674.9 601 59.1
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 1.6e-191 673.3 622 58.7
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.5e-191 672.2 508 68.5
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 4.6e-191 671.8 581 61.8
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.0e-190 670.6 604 59.9
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 1.0e-190 670.6 543 63.9
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 2.3e-190 669.5 603 59.9
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 8.7e-190 667.5 592 61.7
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 1.6e-188 663.3 605 58.3
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 4.9e-185 651.7 593 59.7
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 2.7e-183 646.0 511 65.2
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 2.7e-183 646.0 641 56.6
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.8e-182 643.3 611 58.8
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 7.4e-181 637.9 618 57.3
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 2.5e-176 622.9 566 59.5
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 7.9e-167 591.3 577 55.1
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 3.0e-166 589.3 613 51.2
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 1.3e-164 583.9 608 51.8
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.3e-164 581.6 553 58.0
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 7.0e-155 551.6 588 50.3
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 1.7e-153 547.0 614 52.0
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 6.5e-153 545.0 598 50.3
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 9.4e-152 541.2 598 51.5
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 1.2e-149 534.3 427 65.3
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 3.7e-148 529.3 426 63.8
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 7.2e-144 515.0 390 66.7
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 8.1e-111 405.2 539 43.6
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 1.4e-110 404.4 299 66.9
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 4.1e-107 392.9 323 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 8.6e-105 385.2 428 48.8
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 5.2e-102 375.9 465 48.6
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 9.9e-101 371.7 360 56.7
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.1e-99 368.2 279 65.9
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 3.1e-94 350.1 274 63.1
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 3.3e-88 330.1 241 69.7
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 9.6e-88 328.6 631 34.1
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.2e-87 325.9 317 54.9
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 1.4e-83 314.7 324 54.0
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 1.8e-81 307.8 720 31.0
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 5.6e-80 302.8 240 63.3
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.2e-74 285.0 299 51.8
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 3.5e-74 283.5 240 60.0
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 8.7e-73 278.9 221 64.3
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 5.0e-68 263.1 253 55.7
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.5e-66 256.9 286 50.7
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 1.4e-62 245.0 169 72.8
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 1.8e-62 244.6 287 48.4
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 1.8e-57 228.0 279 48.4
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 2.2e-55 221.1 200 59.0
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 4.8e-55 219.9 202 55.0
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 6.9e-54 216.1 174 64.9
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.0e-53 214.5 210 55.7
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 3.4e-53 213.8 724 25.6
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 2.5e-51 207.6 128 75.0
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.2e-51 207.2 151 66.2
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-44 182.6 247 40.9
QL08p054473 Quercus lobata HOM05D004229 ORTHO05D005468 8.8e-41 172.6 136 66.2
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 6.1e-34 149.8 489 26.8
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 4.0e-33 147.1 121 61.2
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 7.5e-32 142.9 124 58.1
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.4e-30 138.7 116 62.9
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 4.1e-30 137.1 150 51.3
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 1.6e-26 125.2 125 54.4
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 1.6e-26 125.2 74 77.0
Carub.0005s2207 Capsella rubella HOM05D004229 ORTHO05D005468 5.5e-19 100.1 81 61.7
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 3.6e-18 97.4 121 46.3
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.2e-16 92.4 77 59.7
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 1.2e-16 92.4 77 57.1
Sopen01g012580 Solanum pennellii HOM05D004229 ORTHO05D026150 2.0e-16 91.7 53 75.5
Sopen01g007880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-14 85.9 53 73.6
MELO3C028235.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.0e-13 81.6 51 68.6
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 7.8e-13 79.7 70 61.4
Solyc01g016900.1 Solanum lycopersicum HOM05D004229 ORTHO05D026150 2.3e-12 78.2 98 42.9
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 4.3e-11 73.9 54 63.0
Solyc05g024120.3 Solanum lycopersicum HOM05D004229 ORTHO05D005468 3.6e-10 70.9 119 40.3
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.8e-09 68.6 52 61.5
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 5.2e-09 67.0 55 58.2
Sopen05g018750 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-08 65.9 137 37.2
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 1.5e-08 65.5 65 50.8
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.0e-08 65.1 51 58.8
Sopen05g016270 Solanum pennellii HOM05D004229 ORTHO05D026150 8.3e-07 59.7 46 63.0
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.9e-06 58.5 36 72.2


User provided reference genes

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