Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 0.0e+00 1249.2 630 100.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.7e-224 781.6 643 62.7
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 3.5e-219 765.4 641 61.9
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.7e-211 739.2 647 60.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 5.5e-209 731.5 649 58.7
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 4.7e-208 728.4 649 58.2
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 8.0e-208 727.6 640 58.9
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 2.6e-206 722.6 649 57.8
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.2e-205 719.5 647 58.4
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 2.8e-205 719.2 641 58.0
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.7e-203 711.1 649 58.2
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.8e-199 699.9 649 56.4
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 2.6e-198 696.0 649 57.2
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 3.4e-198 695.7 658 55.8
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.9e-197 691.8 653 56.4
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.1e-196 690.6 645 57.4
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.8e-196 689.9 626 58.1
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 3.2e-196 689.1 642 55.1
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 7.0e-196 688.0 647 56.6
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.2e-195 687.2 654 55.8
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.5e-195 685.6 648 56.0
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 3.3e-193 679.1 657 54.5
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.2e-192 677.2 657 55.6
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 3.6e-192 675.6 653 54.8
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 3.6e-192 675.6 648 55.6
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.0e-191 674.1 649 55.3
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.8e-191 673.3 650 54.6
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 4.0e-191 672.2 654 54.3
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 4.0e-191 672.2 656 53.8
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 6.8e-191 671.4 678 53.7
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.2e-188 662.5 656 54.9
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 9.2e-188 661.0 642 54.7
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.2e-187 660.6 646 54.5
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.2e-187 660.6 652 54.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.0e-186 657.5 650 55.4
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.3e-186 657.1 649 54.1
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 3.9e-186 655.6 655 54.2
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 5.0e-186 655.2 646 54.8
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 6.6e-186 654.8 652 53.4
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 6.6e-186 654.8 648 54.3
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 1.9e-185 653.3 653 53.8
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 1.9e-185 653.3 652 53.8
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 4.3e-185 652.1 649 54.4
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 5.6e-185 651.7 652 53.1
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 5.6e-185 651.7 651 54.7
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 7.3e-185 651.4 650 54.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 7.3e-185 651.4 657 53.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 3.6e-184 649.0 651 53.9
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.4e-183 647.1 653 52.8
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.4e-183 647.1 660 52.6
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.4e-183 647.1 649 53.3
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 8.9e-183 644.4 656 53.7
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.6e-182 642.9 647 53.2
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 3.4e-182 642.5 649 53.6
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 4.4e-182 642.1 656 53.5
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 5.8e-182 641.7 656 53.7
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.3e-181 637.9 657 52.7
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.1e-180 637.5 652 53.5
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-180 637.1 658 52.6
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 3.2e-180 636.0 662 52.6
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 3.5e-179 632.5 653 51.0
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 7.8e-179 631.3 646 53.9
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 7.8e-179 631.3 649 53.2
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.7e-178 630.2 651 52.5
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 2.3e-178 629.8 646 52.2
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 8.6e-178 627.9 651 51.3
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.1e-177 627.5 658 51.8
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.3e-177 625.9 658 52.1
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 5.6e-177 625.2 646 52.3
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.2e-176 624.0 657 52.2
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 8.1e-176 621.3 646 52.0
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.4e-175 620.5 646 52.0
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.3e-175 619.8 653 52.1
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 6.8e-175 618.2 651 51.5
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.5e-174 617.1 650 52.0
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.9e-173 612.8 650 51.2
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.9e-173 612.8 649 51.8
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 3.2e-172 609.4 650 50.9
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 3.2e-172 609.4 650 50.9
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 7.1e-172 608.2 661 50.4
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.1e-171 606.7 639 51.6
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 4.6e-171 605.5 638 52.8
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.0e-170 604.4 658 50.6
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 7.6e-166 588.2 647 49.8
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.9e-164 583.6 652 48.5
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 1.0e-162 577.8 658 48.8
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 5.6e-161 572.0 663 47.5
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.6e-160 570.5 658 46.5
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.1e-160 570.1 654 47.9
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 3.1e-159 566.2 648 48.8
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 9.0e-159 564.7 652 48.6
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.4e-156 557.4 657 47.6
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.3e-154 550.8 655 48.1
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 3.9e-154 549.3 639 50.4
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 4.3e-153 545.8 656 46.0
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.8e-151 540.4 687 44.1
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.1e-148 531.2 647 47.6
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 5.7e-137 492.3 511 54.4
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.4e-133 478.4 493 51.7
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 3.0e-122 443.4 601 44.4
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 4.3e-121 439.5 519 44.3
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 8.2e-120 435.3 472 50.0
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.0e-114 418.3 417 55.6
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 7.0e-111 405.6 648 38.0
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 8.0e-99 365.5 334 59.6
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.5e-97 361.3 635 37.2
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.3e-93 348.2 331 58.3
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 2.9e-93 347.1 639 35.4
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.5e-78 297.0 499 38.1
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 1.7e-72 278.1 364 44.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 7.8e-70 269.2 283 47.7
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 8.6e-69 265.8 272 48.5
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.6e-67 260.4 754 28.2
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 6.2e-59 233.0 694 28.1
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 1.0e-53 215.7 254 43.7
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.7e-53 214.9 355 36.1
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.6e-51 207.2 196 53.1
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-33 148.7 211 42.2
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.0e-21 107.8 88 61.4
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.9e-20 105.1 208 31.7
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 9.6e-20 102.8 104 53.8
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 8.2e-19 99.8 76 63.2
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 4.5e-17 94.0 218 31.2
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.7e-16 92.0 211 29.9
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.8e-16 90.9 62 74.2
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.9e-15 88.6 83 56.6
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 4.2e-15 87.4 127 43.3
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.0e-13 82.8 208 31.2
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.1e-12 79.3 94 43.6
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.9e-12 78.6 77 61.0
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.6e-11 75.5 145 36.6
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.3e-11 73.6 88 42.0
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 4.1e-10 70.9 77 45.5
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 6.9e-10 70.1 104 36.5
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 6.1e-06 57.0 41 75.6


User provided reference genes

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