Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 5.1e-90 334.3 164 100.0
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.4e-39 166.8 144 61.8
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.5e-20 102.8 128 48.4
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 5.8e-17 91.7 129 41.9
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 5.8e-17 91.7 121 45.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-16 90.5 125 42.4
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.3e-16 90.5 122 42.6
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.7e-16 90.1 128 39.8
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.9e-16 89.4 126 42.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 6.4e-16 88.2 124 43.5
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 2.4e-15 86.3 122 42.6
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.2e-15 85.9 128 38.3
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 4.2e-15 85.5 126 42.1
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 9.2e-15 84.3 132 39.4
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.6e-14 83.6 129 37.2
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.1e-14 83.2 120 41.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.1e-14 83.2 120 41.7
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 2.7e-14 82.8 149 37.6
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 3.5e-14 82.4 127 39.4
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 3.5e-14 82.4 127 39.4
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 3.5e-14 82.4 133 39.8
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 3.5e-14 82.4 121 39.7
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 4.6e-14 82.0 124 40.3
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.0e-13 80.9 130 38.5
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.3e-13 80.5 132 37.9
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.7e-13 80.1 129 36.4
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.0e-13 79.3 153 35.9
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.9e-13 79.0 114 38.6
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.6e-13 78.2 126 38.9
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.7e-13 77.8 114 37.7
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 8.7e-13 77.8 154 33.1
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.9e-12 76.6 126 34.1
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 4.3e-12 75.5 76 52.6
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 4.3e-12 75.5 76 52.6
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.3e-12 75.5 122 36.1
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 5.6e-12 75.1 110 38.2
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 5.6e-12 75.1 110 38.2
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.6e-12 75.1 114 37.7
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.6e-12 75.1 114 37.7
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 5.6e-12 75.1 124 36.3
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.2e-11 73.9 109 38.5
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.2e-11 73.9 122 35.2
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.6e-11 73.6 71 53.5
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-11 73.6 156 33.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-11 73.6 156 33.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 4.7e-11 72.0 115 40.0
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.7e-11 72.0 115 40.0
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-10 70.9 109 37.6
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-10 70.5 112 36.6
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.4e-10 70.5 112 36.6
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.4e-10 70.5 112 36.6
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.4e-10 70.5 133 34.6
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.8e-10 70.1 136 33.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.4e-10 69.7 109 37.6
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 2.4e-10 69.7 109 37.6
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.4e-10 69.7 136 33.1
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.4e-10 69.7 134 34.3
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 2.4e-10 69.7 123 38.2
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 4.0e-10 68.9 128 35.9
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 5.2e-10 68.6 130 36.2
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 6.9e-10 68.2 127 37.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.0e-10 67.8 124 34.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.0e-10 67.8 124 34.7
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.2e-09 67.4 135 36.3
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.2e-09 67.4 122 39.3
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.5e-09 67.0 140 35.7
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.5e-09 67.0 140 35.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.4e-09 65.5 129 34.1
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.4e-09 65.5 129 34.1
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 4.4e-09 65.5 114 37.7
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 5.8e-09 65.1 46 60.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 7.6e-09 64.7 122 35.2
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 9.9e-09 64.3 124 36.3
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.3e-08 63.9 131 35.1
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.3e-08 63.9 130 34.6
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.2e-08 63.2 123 36.6
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.9e-08 62.8 117 33.3
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 2.9e-08 62.8 131 34.4
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.8e-08 62.4 153 31.4
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 4.9e-08 62.0 128 32.0
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.9e-08 62.0 122 32.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 6.4e-08 61.6 117 34.2
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 8.4e-08 61.2 64 51.6
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.1e-07 60.8 120 34.2
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.1e-07 60.8 124 32.3
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.1e-07 60.8 114 36.0
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.1e-07 60.8 114 36.8
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.9e-07 60.1 137 32.1
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.9e-07 60.1 122 32.8
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.9e-07 60.1 129 34.1
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.9e-07 60.1 129 34.1
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.9e-07 60.1 129 34.1
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.9e-07 60.1 129 34.9
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.9e-07 60.1 129 34.1
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 2.4e-07 59.7 186 28.5
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 2.4e-07 59.7 125 32.0
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 4.2e-07 58.9 126 34.9
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 5.4e-07 58.5 125 33.6
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 7.1e-07 58.2 138 31.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 7.1e-07 58.2 123 32.5
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.2e-06 57.4 137 31.4
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.1e-06 56.6 123 32.5
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 3.5e-06 55.8 122 37.7
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.6e-06 55.5 122 37.7
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 7.8e-06 54.7 125 33.6


User provided reference genes

Program Settings