Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 4.0e-171 604.7 322 100.0
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 3.4e-122 442.2 315 70.2
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 1.9e-120 436.4 319 68.7
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.3e-118 429.5 319 68.0
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 9.7e-117 424.1 319 70.5
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.6e-116 423.3 315 72.1
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 8.5e-113 411.0 317 69.1
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.2e-111 407.1 337 63.8
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 5.1e-110 401.7 320 65.0
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 5.1e-110 401.7 315 65.1
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 8.8e-110 401.0 323 63.2
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 6.3e-108 394.8 314 64.0
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 6.9e-107 391.3 316 62.7
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 2.2e-105 386.3 317 64.0
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 3.8e-105 385.6 317 64.0
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 1.4e-104 383.6 317 63.4
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 4.2e-104 382.1 317 63.4
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.6e-103 380.2 323 60.4
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 1.6e-103 380.2 316 59.5
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 2.1e-103 379.8 316 60.1
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 2.7e-103 379.4 318 59.1
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 3.6e-103 379.0 319 61.8
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 6.1e-103 378.3 318 59.4
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.8e-102 376.7 318 58.8
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 3.0e-102 375.9 320 58.8
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.6e-101 372.9 314 63.1
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 7.4e-101 371.3 321 60.1
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 9.7e-101 370.9 292 65.1
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 9.7e-101 370.9 329 57.1
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 3.7e-100 369.0 318 60.1
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 4.8e-100 368.6 319 58.6
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 4.8e-100 368.6 311 60.5
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 6.3e-100 368.2 322 58.7
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 1.8e-99 366.7 323 58.2
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.2e-98 364.0 316 59.8
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 5.9e-98 361.7 310 57.4
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.3e-97 360.5 376 53.5
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 1.7e-97 360.1 315 59.7
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 1.9e-96 356.7 315 57.8
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 1.9e-96 356.7 325 59.4
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 5.5e-96 355.1 320 55.9
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 4.7e-95 352.1 322 55.6
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 3.3e-93 345.9 327 55.4
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 7.5e-93 344.7 317 56.2
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 1.3e-92 344.0 326 58.0
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 3.7e-92 342.4 286 62.2
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 6.3e-92 341.7 328 54.9
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 6.3e-92 341.7 317 55.5
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 8.2e-92 341.3 319 56.1
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 8.2e-92 341.3 326 55.5
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 1.4e-91 340.5 325 57.2
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 2.4e-91 339.7 324 55.2
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.4e-91 339.7 314 55.7
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 9.1e-91 337.8 311 56.3
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 4.5e-90 335.5 317 55.8
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 4.5e-90 335.5 318 55.7
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 1.0e-89 334.3 322 55.0
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 1.3e-89 334.0 314 55.4
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 1.3e-89 334.0 324 54.6
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.7e-89 333.6 329 55.0
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 5.0e-89 332.0 320 55.3
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 1.1e-88 330.9 279 60.6
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 1.9e-88 330.1 321 53.9
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 3.2e-88 329.3 314 54.8
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 4.2e-88 328.9 326 54.6
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 4.2e-88 328.9 317 54.3
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 1.2e-87 327.4 319 54.5
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.6e-87 327.0 324 54.3
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 2.7e-87 326.2 319 54.2
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 3.6e-87 325.9 308 52.6
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.4e-86 323.9 324 53.4
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 2.3e-86 323.2 320 53.8
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 4.0e-86 322.4 320 54.1
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.2e-85 320.9 319 53.6
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 3.4e-85 319.3 317 51.7
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 7.5e-85 318.2 318 53.1
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 9.8e-85 317.8 314 54.8
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.7e-84 317.0 318 53.5
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.7e-84 317.0 317 53.0
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 1.7e-84 317.0 318 53.1
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 8.3e-84 314.7 317 52.4
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 1.1e-83 314.3 320 51.2
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.8e-83 313.5 232 63.4
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.2e-82 310.8 320 52.5
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 2.7e-82 309.7 325 51.1
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 3.5e-82 309.3 321 53.3
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.0e-81 307.8 285 56.1
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 2.2e-81 306.6 318 53.1
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 3.8e-81 305.8 364 47.0
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 1.9e-80 303.5 269 56.1
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 7.2e-80 301.6 309 52.1
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.6e-79 299.3 318 50.6
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 2.0e-77 293.5 342 47.4
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 2.6e-77 293.1 314 50.0
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 7.5e-77 291.6 320 49.4
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 7.5e-77 291.6 317 49.5
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 7.5e-77 291.6 317 49.5
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 7.5e-77 291.6 320 49.4
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 8.3e-76 288.1 319 51.7
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 4.1e-75 285.8 324 47.8
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 1.2e-74 284.3 319 49.2
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 7.7e-74 281.6 319 48.3
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 7.7e-74 281.6 314 48.7
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.9e-72 276.9 310 50.0
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 3.3e-72 276.2 321 46.1
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 2.1e-71 273.5 316 49.1
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 1.4e-70 270.8 311 47.6
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 2.3e-70 270.0 316 46.2
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 5.2e-70 268.9 319 48.3
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 8.9e-70 268.1 327 47.4
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.5e-69 267.3 329 48.0
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.5e-69 267.3 308 49.0
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 1.7e-68 263.8 324 44.4
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 3.7e-68 262.7 311 46.3
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 3.7e-68 262.7 312 47.1
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 3.2e-67 259.6 309 45.3
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 1.6e-66 257.3 319 47.6
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 2.7e-66 256.5 317 45.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.5e-66 256.1 316 46.5
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 3.0e-65 253.1 316 45.9
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 2.5e-64 250.0 318 47.2
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 1.6e-63 247.3 319 44.2
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 2.1e-63 246.9 231 59.7
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 5.8e-61 238.8 189 58.7
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 1.0e-57 228.0 320 41.9
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 2.8e-55 219.9 205 55.6
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.8e-54 217.2 476 33.4
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 7.5e-53 211.8 326 42.9
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 9.8e-53 211.5 294 45.2
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.1e-50 203.8 274 45.3
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 6.6e-49 198.7 324 37.3
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.1e-46 191.4 310 37.4
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 4.4e-45 186.0 182 48.9
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 1.3e-44 184.5 326 36.5
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 2.9e-44 183.3 265 48.3
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 2.1e-42 177.2 241 40.7
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 2.5e-40 170.2 137 61.3
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 5.6e-40 169.1 301 34.9
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.6e-34 151.0 306 34.3
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 5.1e-25 119.4 100 56.0
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.6e-24 115.2 113 54.0
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 1.1e-22 111.7 213 37.1
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.9e-21 105.1 169 42.6
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 1.4e-19 101.3 114 54.4
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 7.9e-18 95.5 188 32.4
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 7.9e-18 95.5 238 31.9
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 1.0e-17 95.1 157 39.5
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 7.4e-16 89.0 113 46.9
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 9.6e-16 88.6 113 51.3
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 4.8e-15 86.3 215 32.1
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.3e-12 78.2 79 49.4
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.2e-12 77.4 100 49.0
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 2.5e-11 73.9 186 35.5
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.6e-10 69.7 227 28.6
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.3e-07 61.6 55 50.9
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.4e-06 58.2 171 26.3


User provided reference genes

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