Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-93 345.5 170 100.0
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.2e-46 190.3 98 94.9
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 5.8e-36 154.8 106 71.7
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 4.9e-35 151.8 97 75.3
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.9e-35 151.8 96 74.0
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.1e-34 150.6 126 63.5
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.9e-34 149.8 139 57.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.2e-33 147.1 96 71.9
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.7e-33 146.0 96 71.9
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.7e-33 146.0 96 70.8
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.5e-33 145.6 137 56.9
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.5e-33 145.6 100 71.0
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 4.6e-33 145.2 96 72.9
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.6e-33 145.2 112 64.3
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.8e-33 144.4 108 65.7
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 7.8e-33 144.4 98 70.4
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.3e-32 143.7 96 69.8
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.7e-32 143.3 92 72.8
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.3e-32 142.9 95 72.6
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.3e-32 142.9 134 57.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.0e-32 142.5 143 55.9
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.0e-32 142.5 96 68.8
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.0e-32 142.5 98 69.4
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.9e-32 142.1 112 61.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.9e-32 142.1 97 70.1
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 3.9e-32 142.1 139 55.4
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 3.9e-32 142.1 93 69.9
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 3.9e-32 142.1 95 73.7
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 5.1e-32 141.7 96 69.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 5.1e-32 141.7 98 71.4
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 6.6e-32 141.4 91 71.4
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 6.6e-32 141.4 115 60.9
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 8.6e-32 141.0 94 71.3
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 8.6e-32 141.0 95 71.6
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 8.6e-32 141.0 89 73.0
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.6e-32 141.0 96 72.9
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 8.6e-32 141.0 96 71.9
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 8.6e-32 141.0 92 69.6
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.1e-31 140.6 94 71.3
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.1e-31 140.6 96 70.8
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.1e-31 140.6 96 70.8
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.1e-31 140.6 95 69.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.5e-31 140.2 145 54.5
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.5e-31 140.2 136 56.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.9e-31 139.8 91 70.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.5e-31 139.4 96 72.9
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.3e-31 139.0 89 71.9
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.3e-31 138.7 143 51.7
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.3e-31 138.7 143 51.7
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 5.6e-31 138.3 135 54.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.6e-31 138.3 89 71.9
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.6e-31 138.3 89 74.2
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 7.3e-31 137.9 123 61.0
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 9.5e-31 137.5 95 69.5
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 9.5e-31 137.5 89 70.8
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 9.5e-31 137.5 89 73.0
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.2e-30 137.1 127 55.1
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.2e-30 137.1 98 68.4
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.2e-30 137.1 95 68.4
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.6e-30 136.7 106 65.1
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.6e-30 136.7 106 65.1
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.6e-30 136.7 106 65.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.6e-30 136.7 106 65.1
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.6e-30 136.7 106 65.1
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.6e-30 136.7 106 65.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.6e-30 136.7 96 70.8
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.6e-30 136.7 93 73.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.6e-30 136.7 96 66.7
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.6e-30 136.7 110 65.5
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.8e-30 136.0 98 64.3
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.8e-30 136.0 98 64.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.8e-30 136.0 144 54.2
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 2.8e-30 136.0 89 71.9
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.8e-30 136.0 92 68.5
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 3.6e-30 135.6 94 63.8
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.7e-30 135.2 89 73.0
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 4.7e-30 135.2 95 66.3
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 4.7e-30 135.2 100 65.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 6.2e-30 134.8 96 64.6
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 6.2e-30 134.8 142 50.7
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.1e-30 134.4 89 69.7
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.1e-30 134.4 112 60.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 8.1e-30 134.4 89 70.8
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 8.1e-30 134.4 112 60.7
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 8.1e-30 134.4 95 67.4
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 8.1e-30 134.4 127 55.1
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.1e-29 134.0 92 67.4
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.1e-29 134.0 102 62.7
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-29 134.0 96 62.5
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.4e-29 133.7 120 57.5
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.4e-29 133.7 96 66.7
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.8e-29 133.3 106 60.4
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.8e-29 133.3 95 68.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.8e-29 133.3 93 66.7
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.3e-29 132.9 105 62.9
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 2.3e-29 132.9 100 63.0
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 2.3e-29 132.9 89 67.4
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 3.1e-29 132.5 105 63.8
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.0e-29 132.1 100 61.0
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 5.2e-29 131.7 100 61.0
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 5.2e-29 131.7 89 67.4
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 6.8e-29 131.3 115 60.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 8.9e-29 131.0 135 54.1
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 8.9e-29 131.0 89 67.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 8.9e-29 131.0 127 54.3
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.2e-28 130.6 95 62.1
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.5e-28 130.2 89 69.7
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.5e-28 130.2 91 67.0
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 5.8e-28 128.3 96 63.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.8e-28 128.3 88 64.8
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.8e-28 128.3 88 64.8
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 7.6e-28 127.9 98 63.3
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 7.6e-28 127.9 109 59.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.3e-27 127.1 88 64.8
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.2e-27 126.3 113 57.5
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.9e-27 125.9 89 67.4
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 4.9e-27 125.2 96 62.5
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.9e-27 125.2 130 50.0
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 6.4e-27 124.8 96 61.5
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.1e-26 124.0 94 64.9
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.1e-26 124.0 91 62.6
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.4e-26 123.6 91 62.6
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.4e-26 122.9 83 67.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 4.1e-26 122.1 79 70.9
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.1e-26 122.1 95 63.2
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.2e-25 120.6 111 55.9
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.5e-25 119.0 107 56.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 6.0e-25 118.2 81 69.1
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.0e-24 117.5 110 54.5
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.3e-24 116.3 80 67.5
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.3e-24 116.3 80 67.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 4.3e-23 112.1 107 50.5
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 4.0e-21 105.5 79 60.8
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.2e-21 105.1 91 54.9
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 5.2e-21 105.1 96 54.2
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 6.9e-21 104.8 79 59.5
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.6e-20 102.8 89 55.1
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.7e-19 100.1 129 45.7
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 6.4e-19 98.2 98 56.1
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 8.4e-19 97.8 78 60.3
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.9e-18 96.7 96 53.1
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.5e-17 92.4 96 52.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 7.8e-17 91.3 96 52.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.3e-16 89.7 71 60.6
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-10 70.1 55 65.5
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.7e-09 66.2 89 34.8
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 1.3e-06 57.4 42 71.4


User provided reference genes

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