Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.2e-217 759.6 390 100.0
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.4e-138 495.0 330 76.7
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 8.9e-133 477.6 335 73.4
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 7.6e-132 474.6 319 73.7
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.6e-129 466.8 317 72.9
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.7e-129 466.1 326 70.9
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 2.3e-128 463.0 334 73.1
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 6.6e-128 461.5 337 71.8
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 9.6e-127 457.6 338 69.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.8e-126 456.1 324 71.9
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 4.7e-126 455.3 328 72.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.1e-125 454.1 326 70.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 4.0e-125 452.2 320 70.3
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.0e-125 452.2 316 72.5
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.0e-125 452.2 384 62.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 5.2e-125 451.8 314 71.3
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 5.2e-125 451.8 335 70.4
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 6.8e-125 451.4 352 64.8
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.8e-125 451.4 319 72.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.8e-125 451.4 319 72.7
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.6e-124 449.5 325 71.4
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-123 447.2 316 69.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.2e-123 446.4 316 72.8
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.9e-123 446.0 330 68.2
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 2.9e-123 446.0 327 71.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.9e-123 446.0 330 69.7
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-122 444.1 328 70.7
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.4e-122 443.7 326 69.9
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 4.2e-122 442.2 320 70.9
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 5.4e-122 441.8 315 71.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.4e-122 441.8 347 65.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 7.1e-122 441.4 317 69.7
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 9.3e-122 441.0 318 72.6
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.2e-121 440.7 330 69.7
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.2e-121 440.7 335 66.0
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.2e-121 440.7 314 72.0
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.6e-121 440.3 331 69.8
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 2.1e-121 439.9 335 69.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.7e-121 439.5 322 70.5
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 4.6e-121 438.7 330 69.1
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 7.8e-121 438.0 317 71.0
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.3e-120 437.2 330 68.2
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.3e-120 437.2 338 67.8
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.7e-120 436.8 315 72.1
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.3e-120 436.4 330 69.7
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 3.0e-120 436.0 329 69.6
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.0e-120 436.0 323 68.7
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 3.0e-120 436.0 326 67.2
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.9e-120 435.6 320 70.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.9e-120 435.6 336 67.0
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 5.1e-120 435.3 338 67.5
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 5.1e-120 435.3 352 64.8
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 6.6e-120 434.9 326 67.5
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.5e-119 433.7 324 67.6
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.5e-119 433.7 315 71.4
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.9e-119 433.3 334 66.5
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.9e-119 433.3 332 69.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.9e-119 433.3 320 70.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.3e-119 432.6 319 70.5
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 5.6e-119 431.8 334 66.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.3e-119 431.4 322 69.6
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.1e-118 429.9 319 67.1
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.8e-118 429.5 345 66.1
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.6e-118 429.1 320 70.0
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-117 427.2 315 69.8
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 4.0e-117 425.6 340 63.8
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 4.0e-117 425.6 321 67.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 5.3e-117 425.2 316 69.0
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 6.9e-117 424.9 314 69.7
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.2e-116 424.1 328 67.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.2e-116 424.1 332 67.8
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.4e-116 422.5 287 73.2
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 7.6e-116 421.4 330 66.7
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.2e-115 419.9 327 65.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 3.8e-115 419.1 346 65.0
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 6.4e-115 418.3 316 68.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 8.4e-115 417.9 316 68.7
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.4e-114 417.2 301 70.4
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.4e-114 417.2 331 66.5
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.4e-114 416.4 313 68.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.4e-114 416.4 316 67.7
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.2e-114 416.0 313 68.7
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.2e-114 415.6 328 65.2
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 5.4e-114 415.2 319 68.7
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 9.3e-114 414.5 250 79.2
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.6e-113 413.7 323 67.8
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.7e-113 412.9 330 64.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 7.9e-113 411.4 324 64.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.7e-112 410.2 316 67.7
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 5.1e-112 408.7 296 69.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.5e-111 407.1 318 64.5
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 3.3e-111 406.0 335 62.7
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 7.3e-111 404.8 316 64.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 2.8e-110 402.9 312 65.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.5e-108 397.1 326 65.6
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.2e-107 393.3 292 69.2
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.9e-107 392.9 287 67.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 4.9e-107 392.1 304 66.1
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 6.4e-107 391.7 287 69.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.1e-106 391.0 334 62.6
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 7.9e-105 384.8 285 66.7
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.8e-104 383.6 318 66.0
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.3e-104 383.3 331 63.7
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.9e-104 382.5 300 69.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.9e-104 382.5 277 72.2
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 9.6e-103 377.9 322 62.1
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 9.6e-103 377.9 314 64.3
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 6.2e-102 375.2 342 58.5
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.9e-99 365.5 301 64.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 6.5e-99 365.2 298 65.4
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 8.4e-99 364.8 318 61.0
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.1e-98 364.4 274 71.9
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.1e-97 360.1 341 59.2
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 2.3e-96 356.7 222 77.0
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.5e-95 354.0 221 76.9
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 3.4e-92 342.8 336 56.5
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 4.6e-89 332.4 238 69.3
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 7.9e-89 331.6 280 63.9
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 6.7e-88 328.6 340 52.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.3e-87 325.9 283 61.8
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.4e-85 320.1 266 63.2
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.6e-81 307.4 235 68.1
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 8.2e-78 295.0 231 65.4
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 6.5e-75 285.4 285 54.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.2e-74 282.7 228 64.9
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.4e-72 277.7 276 53.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 3.9e-72 276.2 208 69.7
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.7e-67 260.8 231 55.8
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.5e-66 256.9 226 60.6
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 2.7e-65 253.4 175 65.7
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.7e-65 252.7 163 75.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 5.2e-64 249.2 239 59.8
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.0e-63 247.3 227 59.5
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.3e-63 246.5 225 60.0
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.5e-63 245.4 218 59.6
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.2e-62 243.8 274 52.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.5e-60 236.5 224 55.8
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 8.0e-57 225.3 233 51.5
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.5e-55 221.1 140 76.4
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 3.7e-54 216.5 241 52.3
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.5e-52 209.5 223 53.4
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 2.9e-51 206.8 197 60.9
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.1e-50 204.9 136 72.8
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-48 198.0 264 46.6
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.2e-44 184.9 230 45.7
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.4e-40 171.4 154 52.6
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.9e-40 168.7 118 73.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.7e-39 166.0 258 38.4
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.6e-36 157.9 162 48.1
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.3e-35 154.1 141 55.3
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-33 148.3 113 59.3
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 8.9e-32 142.1 188 49.5
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.2e-30 137.5 159 48.4
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-30 136.7 157 49.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-30 136.7 157 49.0
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.9e-30 136.3 157 45.2
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 7.8e-28 129.0 294 38.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.4e-24 118.2 172 47.7
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.3e-24 117.5 83 69.9
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 4.4e-23 113.2 112 58.0
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 9.8e-23 112.1 84 64.3
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-21 108.6 107 59.8
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.1e-21 108.6 67 65.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.2e-20 105.1 105 45.7
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 1.6e-20 104.8 67 64.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 6.0e-20 102.8 117 42.7
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 6.0e-20 102.8 67 62.7
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 6.0e-20 102.8 67 62.7
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.3e-19 101.7 66 65.2
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 2.3e-19 100.9 115 42.6
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.3e-19 100.9 104 47.1
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 1.1e-18 98.6 65 58.5
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 4.3e-18 96.7 72 56.9
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 4.3e-18 96.7 72 56.9
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-16 91.7 176 38.6
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 6.8e-16 89.4 67 55.2
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 6.8e-16 89.4 67 55.2
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.2e-15 88.6 125 40.0
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 8.4e-14 82.4 81 50.6
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.9e-13 81.3 112 39.3
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.8e-08 64.7 60 63.3
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 4.0e-08 63.5 104 42.3
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.6e-07 60.8 97 43.3
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 5.8e-07 59.7 58 58.6
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 5.8e-07 59.7 44 70.5
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 9.9e-07 58.9 71 49.3
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.3e-06 58.5 95 42.1


User provided reference genes

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