Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 1.7e-241 839.0 431 100.0
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 2.7e-239 831.6 431 99.3
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 3.7e-188 661.8 426 81.0
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 9.4e-184 647.1 429 78.6
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 3.0e-182 642.1 427 78.5
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 3.0e-182 642.1 433 77.6
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.8e-179 632.9 435 77.0
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 5.5e-176 621.3 404 80.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 5.2e-174 614.8 433 76.0
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 4.8e-172 608.2 438 74.7
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 6.1e-167 591.3 428 72.2
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.0e-165 586.3 388 79.1
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 4.2e-160 568.5 417 70.7
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 1.8e-155 553.1 404 70.3
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 9.2e-155 550.8 405 70.9
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 4.5e-154 548.5 405 70.6
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 4.5e-154 548.5 427 68.9
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 3.9e-153 545.4 404 70.8
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.9e-152 543.1 428 67.1
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 2.3e-150 536.2 408 70.3
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 2.2e-148 529.6 427 66.0
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 3.7e-148 528.9 438 65.5
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.4e-147 526.2 428 65.2
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.7e-145 520.0 425 65.2
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 2.3e-145 519.6 413 67.8
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 6.6e-145 518.1 405 67.7
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 5.6e-144 515.0 432 65.5
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 3.6e-143 512.3 461 62.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.0e-142 508.8 427 63.9
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.0e-141 506.5 428 64.3
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.7e-140 503.4 428 64.7
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.4e-139 499.6 395 65.8
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 1.2e-138 497.3 407 66.8
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.2e-138 497.3 408 66.7
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.6e-138 496.9 427 63.5
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 2.7e-138 496.1 425 61.9
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 6.0e-138 495.0 387 67.2
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 3.9e-137 492.3 433 61.4
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 1.9e-136 490.0 378 69.6
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 3.3e-136 489.2 428 62.6
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 4.3e-136 488.8 375 68.3
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.1e-134 484.2 423 60.5
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 2.3e-134 483.0 399 63.4
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 6.8e-134 481.5 393 65.1
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 5.8e-133 478.4 428 59.8
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 2.9e-132 476.1 444 58.8
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 3.7e-132 475.7 444 58.3
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 1.4e-131 473.8 415 58.8
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 5.4e-131 471.9 393 64.1
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 9.2e-131 471.1 429 60.8
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.3e-129 467.2 372 68.0
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 2.3e-129 466.5 406 63.1
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 2.3e-129 466.5 393 64.6
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 3.9e-129 465.7 444 59.9
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 5.1e-129 465.3 430 58.6
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 3.3e-128 462.6 431 59.4
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 5.6e-128 461.8 371 66.8
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.8e-127 459.5 400 62.0
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 1.8e-126 456.8 422 60.7
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 5.2e-126 455.3 365 67.4
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 6.8e-126 454.9 410 61.2
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 6.8e-126 454.9 422 60.2
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 8.9e-126 454.5 390 62.3
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 8.9e-126 454.5 432 58.8
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 8.9e-126 454.5 427 57.4
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.2e-125 454.1 348 69.3
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 1.2e-125 454.1 474 56.1
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 1.5e-125 453.8 431 58.9
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 1.5e-125 453.8 431 58.9
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.0e-125 453.4 401 60.6
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.6e-125 453.0 427 57.4
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 5.8e-125 451.8 428 59.1
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 5.8e-125 451.8 401 60.6
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 9.9e-125 451.1 395 61.5
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 2.2e-124 449.9 432 58.3
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 3.8e-124 449.1 427 58.8
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 8.4e-124 448.0 432 58.3
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 8.4e-124 448.0 432 58.3
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 8.4e-124 448.0 433 58.0
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 2.4e-123 446.4 431 58.7
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 4.2e-123 445.7 395 60.3
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 9.2e-123 444.5 362 68.5
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.0e-121 441.0 430 57.4
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.7e-121 440.3 427 58.5
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 2.3e-121 439.9 434 57.4
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 8.7e-121 438.0 410 59.5
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 5.6e-120 435.3 388 63.7
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 7.3e-120 434.9 432 56.0
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 7.3e-120 434.9 389 60.4
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 9.6e-120 434.5 393 63.1
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 2.1e-119 433.3 402 58.5
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 4.0e-118 429.1 397 59.2
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 6.9e-118 428.3 391 60.4
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 1.2e-117 427.6 350 66.0
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 4.4e-117 425.6 391 60.1
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 6.2e-111 405.2 334 64.4
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.8e-110 403.7 402 56.2
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.8e-110 403.7 386 57.8
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 1.9e-107 393.7 390 56.4
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.0e-100 371.3 421 51.1
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 1.9e-99 367.1 471 48.6
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.9e-84 316.6 262 66.8
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 2.5e-80 303.5 345 49.9
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 4.3e-80 302.8 312 54.2
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 1.4e-75 287.7 451 40.8
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 1.4e-75 287.7 451 40.8
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 2.7e-74 283.5 439 41.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 5.1e-73 279.3 428 42.5
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.0e-65 255.0 157 80.9
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 1.3e-39 168.3 129 66.7
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 8.3e-39 165.6 122 64.8
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 4.1e-38 163.3 384 34.4
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 2.1e-34 151.0 177 48.6
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 2.3e-33 147.5 324 34.3
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 1.1e-22 112.1 87 66.7
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 8.1e-18 95.9 187 37.4
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 3.4e-16 90.5 151 40.4
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.1e-14 85.5 52 69.2
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 8.6e-12 75.9 52 65.4
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 8.6e-12 75.9 52 65.4
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 6.2e-10 69.7 52 67.3
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 4.4e-08 63.5 90 48.9
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 5.4e-06 56.6 48 56.2


User provided reference genes

Program Settings