Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.0e-121 437.6 228 100.0
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.7e-97 359.0 190 99.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 2.8e-78 295.8 191 83.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 6.3e-78 294.7 188 80.3
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.4e-77 293.5 191 82.7
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 3.1e-77 292.4 190 80.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 9.0e-77 290.8 190 78.9
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.2e-76 290.4 190 80.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.0e-76 289.7 188 79.3
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.3e-75 287.0 190 78.9
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.7e-75 286.6 191 79.1
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 2.9e-75 285.8 188 78.7
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.8e-75 285.4 188 79.8
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.8e-75 285.4 190 78.9
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.4e-74 283.5 189 79.4
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.4e-74 283.5 188 76.6
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 5.5e-74 281.6 190 78.4
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 7.2e-74 281.2 190 76.8
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.6e-73 278.9 189 76.7
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.6e-73 278.5 219 68.9
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.1e-73 278.1 187 78.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.1e-73 278.1 187 78.6
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 7.9e-73 277.7 189 78.3
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 7.9e-73 277.7 187 77.0
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.8e-72 276.6 193 75.6
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.3e-72 276.2 191 79.6
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.1e-71 273.9 189 76.2
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.5e-71 273.5 191 76.4
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.0e-71 273.1 187 75.9
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.3e-71 272.3 187 75.9
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 3.3e-71 272.3 190 76.8
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 5.7e-71 271.6 190 77.4
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 7.4e-71 271.2 189 76.7
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 9.7e-71 270.8 191 75.9
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.3e-70 270.4 190 77.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 2.2e-70 269.6 190 74.7
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.7e-70 268.9 189 75.1
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 4.8e-70 268.5 189 73.0
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 4.8e-70 268.5 187 75.4
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.4e-69 266.9 189 74.1
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.4e-69 266.9 189 74.6
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-69 266.9 189 74.6
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-69 266.9 189 74.6
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.8e-69 266.5 189 74.6
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 2.4e-69 266.2 190 75.8
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.4e-69 266.2 194 73.2
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 4.1e-69 265.4 190 75.8
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.1e-69 265.4 191 75.9
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 4.1e-69 265.4 194 76.3
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.1e-69 265.4 189 76.7
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.3e-69 265.0 191 76.4
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.3e-69 265.0 189 76.2
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 5.3e-69 265.0 187 73.8
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 6.9e-69 264.6 190 74.7
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.5e-68 263.5 194 74.2
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.0e-68 263.1 198 71.2
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.5e-68 261.9 189 75.7
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 5.9e-68 261.5 178 75.8
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 5.9e-68 261.5 193 73.1
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 7.7e-68 261.2 188 73.9
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.0e-67 260.8 190 74.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.7e-67 260.0 194 75.3
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 2.9e-67 259.2 192 73.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 5.0e-67 258.5 192 73.4
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.4e-66 256.9 190 73.7
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 3.2e-66 255.8 188 73.9
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 5.5e-66 255.0 188 71.8
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 5.5e-66 255.0 205 68.3
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 7.2e-66 254.6 189 72.0
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 7.2e-66 254.6 215 63.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.4e-66 254.2 190 72.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-65 253.4 210 66.7
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.6e-65 253.4 210 66.7
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 2.1e-65 253.1 181 73.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 2.1e-65 253.1 193 69.9
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 4.7e-65 251.9 189 70.4
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 6.1e-65 251.5 190 73.7
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.0e-64 250.8 189 70.9
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-64 250.0 190 73.2
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.3e-64 249.6 171 76.0
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.3e-64 249.6 174 74.7
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 3.0e-64 249.2 189 70.9
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 3.9e-64 248.8 190 72.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 5.1e-64 248.4 189 70.4
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 8.8e-64 247.7 188 70.2
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.5e-63 246.9 161 78.9
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 3.3e-63 245.7 189 69.8
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 5.7e-63 245.0 189 69.8
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 5.7e-63 245.0 191 72.8
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 5.7e-63 245.0 191 72.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 5.7e-63 245.0 179 74.3
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 5.7e-63 245.0 189 69.3
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 7.4e-63 244.6 189 69.3
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.3e-62 243.8 189 69.8
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 4.8e-62 241.9 189 71.4
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 3.1e-61 239.2 189 67.7
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 4.1e-61 238.8 186 68.3
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 7.0e-61 238.0 194 70.6
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.1e-61 237.7 178 72.5
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.0e-60 236.5 187 67.9
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.0e-59 234.2 192 67.7
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.3e-59 233.8 217 61.3
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 2.2e-59 233.0 192 67.7
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 3.8e-59 232.3 192 66.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.5e-58 230.3 194 64.9
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 3.2e-58 229.2 227 57.7
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 9.4e-58 227.6 157 74.5
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 6.1e-57 224.9 143 79.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 6.1e-57 224.9 143 79.7
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 6.1e-57 224.9 143 79.0
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.4e-56 223.8 175 71.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.0e-56 222.6 189 66.1
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 3.9e-56 222.2 146 78.8
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 6.7e-56 221.5 125 88.0
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.1e-55 220.7 126 88.1
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.1e-55 220.7 143 81.8
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.1e-55 220.7 162 74.7
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 2.6e-55 219.5 196 64.3
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.4e-55 218.0 158 71.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.7e-54 216.9 125 87.2
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 6.3e-54 214.9 204 60.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 6.3e-54 214.9 124 87.1
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-53 214.2 197 59.9
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 9.1e-53 211.1 164 71.3
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.6e-52 210.3 156 73.7
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.6e-52 209.5 189 63.5
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 5.9e-52 208.4 200 62.0
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 5.9e-52 208.4 125 84.0
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 5.0e-51 205.3 197 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.9e-50 203.4 162 68.5
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.9e-50 203.4 147 76.2
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 2.5e-50 203.0 187 64.7
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 3.2e-50 202.6 155 71.6
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 9.4e-50 201.1 155 70.3
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-49 200.7 155 70.3
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 2.7e-49 199.5 132 75.8
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 4.7e-49 198.7 156 66.0
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 6.1e-49 198.4 156 66.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.0e-48 197.6 187 58.3
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.4e-48 197.2 186 61.8
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.2e-48 195.3 187 58.3
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.2e-47 194.1 176 59.7
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-45 187.6 197 55.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 6.5e-43 178.3 142 71.1
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 9.4e-42 174.5 188 54.3
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.2e-41 174.1 125 68.0
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.2e-40 168.7 189 51.9
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.2e-39 167.5 186 52.2
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.4e-39 166.0 186 52.2
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.7e-38 163.7 124 62.9
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 5.4e-37 158.7 187 50.8
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.2e-36 157.5 127 61.4
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.5e-34 148.7 160 54.4
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.6e-33 147.1 96 80.2
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.1e-33 146.7 145 54.5
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.8e-33 146.4 173 49.7
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 5.7e-31 138.7 150 54.0
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 7.5e-31 138.3 77 89.6
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.3e-30 137.5 103 64.1
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.3e-30 135.2 113 64.6
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.1e-29 134.4 125 62.4
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.6e-25 120.6 69 88.4
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.8e-24 117.1 68 88.2
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.8e-24 115.2 68 86.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.5e-18 96.7 74 63.5
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.3e-18 96.3 57 80.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 4.3e-18 95.9 54 85.2
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 9.5e-18 94.7 75 69.3
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.6e-17 94.0 83 62.7
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-16 90.9 125 45.6
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.4e-16 90.9 124 39.5
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.3e-16 90.1 125 45.6
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.4e-15 86.3 47 89.4
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 3.5e-12 76.3 101 47.5
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.6e-09 67.4 80 47.5
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 5.2e-08 62.4 66 51.5
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 8.9e-08 61.6 50 64.0
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 8.9e-08 61.6 66 51.5
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 5.8e-07 58.9 66 50.0
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 3.7e-06 56.2 31 90.3


User provided reference genes

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