Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z8L4ZJ Arachis hypogaea HOM05D015678 ORTHO05D013939 0.0e+00 1236.5 617 100.0
arahy.Tifrunner.gnm1.ann1.75ENLE Arachis hypogaea HOM05D000568 ORTHO05D013939 0.0e+00 1105.5 646 87.8
arahy.Tifrunner.gnm1.ann1.S50S0B Arachis hypogaea HOM05D000568 ORTHO05D003200 1.3e-37 162.2 462 35.1
Sabra12G0067200 Salix brachista HOM05D000568 ORTHO05D003200 5.0e-37 160.2 201 48.3
Potri.012G092500 Populus trichocarpa HOM05D000568 ORTHO05D003200 9.4e-36 156.0 394 35.3
VMungo1215G3297 Vigna mungo HOM05D000568 ORTHO05D003200 8.8e-34 149.4 421 34.0
Manes.14G055800 Manihot esculenta HOM05D000568 ORTHO05D003200 4.4e-33 147.1 273 38.1
Sabra15G0111800 Salix brachista HOM05D000568 ORTHO05D003200 9.7e-33 146.0 287 38.0
Potri.015G089100 Populus trichocarpa HOM05D000568 ORTHO05D003200 6.3e-32 143.3 257 38.1
Glyma.05G044300 Glycine max HOM05D000568 ORTHO05D003200 1.4e-31 142.1 433 34.2
arahy.Tifrunner.gnm1.ann1.9GY8Y8 Arachis hypogaea HOM05D000568 ORTHO05D003200 7.0e-31 139.8 500 31.0
Phvul.003G207900 Phaseolus vulgaris HOM05D000568 ORTHO05D003200 7.0e-31 139.8 425 33.4
Glyma.17G126800 Glycine max HOM05D000568 ORTHO05D003200 1.1e-28 132.5 433 32.8
arahy.Tifrunner.gnm1.ann1.UBL83T Arachis hypogaea HOM05D000568 ORTHO05D003200 1.2e-27 129.0 257 37.7
vmacro19253 Vaccinium macrocarpon HOM05D000568 ORTHO05D003200 1.2e-27 129.0 210 41.0
Lj4g0012486 Lotus japonicus HOM05D000568 ORTHO05D003200 1.8e-26 125.2 263 39.5
Glyma.04G192100 Glycine max HOM05D000568 ORTHO05D003200 1.3e-24 119.0 198 42.4
Prupe.5G159000 Prunus persica HOM05D000568 ORTHO05D003200 6.3e-24 116.7 156 42.9
Glyma.06G173700 Glycine max HOM05D000568 ORTHO05D003200 2.4e-23 114.8 280 32.5
Cpa.g.sc4.50 Carica papaya HOM05D000568 ORTHO05D003200 3.1e-23 114.4 263 35.0
VMungo1309G1691 Vigna mungo HOM05D000568 ORTHO05D003200 9.1e-23 112.8 157 45.2
Prupe.5G158500 Prunus persica HOM05D000568 ORTHO05D003200 1.2e-22 112.5 274 33.2
arahy.Tifrunner.gnm1.ann1.FMR26E Arachis hypogaea HOM05D000568 ORTHO05D003200 1.6e-22 112.1 251 36.7
FAN04G2566 Fragaria x ananassa HOM05D000568 ORTHO05D003200 2.7e-22 111.3 256 35.9
Lj5A101T106 Lonicera japonica HOM05D000568 ORTHO05D003200 1.7e-21 108.6 215 35.8
Aa31LG4G17020 Aethionema arabicum HOM05D000568 ORTHO05D003200 2.2e-21 108.2 200 40.5
MD14G1165300 Malus domestica HOM05D000568 ORTHO05D003200 2.9e-21 107.8 237 34.6
Manes.06G114200 Manihot esculenta HOM05D000568 ORTHO05D003200 2.9e-21 107.8 195 37.4
Duzib068G0071 Durio zibethinus HOM05D000568 ORTHO05D003200 5.0e-21 107.1 197 37.6
FAN08G3332 Fragaria x ananassa HOM05D000568 ORTHO05D003200 6.5e-21 106.7 256 35.2
Ciclev10019979m.g Citrus clementina HOM05D000568 ORTHO05D003200 1.9e-20 105.1 198 39.4
FAN18G1970 Fragaria x ananassa HOM05D000568 ORTHO05D003200 2.5e-20 104.8 306 32.7
Gohir.A12G187600 Gossypium hirsutum HOM05D000568 ORTHO05D003200 3.2e-20 104.4 197 38.6
CiPaw.12G034800 Carya illinoinensis HOM05D000568 ORTHO05D003200 4.2e-20 104.0 327 30.9
Medtr3g075190 Medicago truncatula HOM05D000568 ORTHO05D003200 4.2e-20 104.0 305 32.5
Ca_16096_v3 Cicer arietinum L. HOM05D000568 ORTHO05D003200 5.5e-20 103.6 248 34.7
Ca_30075_v3 Cicer arietinum L. HOM05D000568 ORTHO05D003200 5.5e-20 103.6 248 34.7
PGR044G2114 Punica granatum HOM05D000568 ORTHO05D003200 5.5e-20 103.6 231 33.3
Eucgr.B00161 Eucalyptus grandis HOM05D000568 ORTHO05D003200 9.5e-20 102.8 263 31.9
FAN13G1895 Fragaria x ananassa HOM05D000568 ORTHO05D003200 1.2e-19 102.4 249 35.3
vmacro07563 Vaccinium macrocarpon HOM05D004211 ORTHO05D013939 2.1e-19 101.7 158 38.6
Gohir.D12G190550 Gossypium hirsutum HOM05D000568 ORTHO05D003200 4.7e-19 100.5 196 37.2
Gorai.008G204400 Gossypium raimondii HOM05D000568 ORTHO05D003200 6.1e-19 100.1 196 37.2
TWI09G0389 Tripterygium wilfordii HOM05D000568 ORTHO05D003200 6.1e-19 100.1 282 29.4
TWI39G0384 Tripterygium wilfordii HOM05D000568 ORTHO05D003200 8.0e-19 99.8 282 29.4
SGA_v2.0_scaffold36G14377 Striga asiatica HOM05D000568 ORTHO05D003200 1.8e-18 98.6 326 31.0
Duzib205G0872 Durio zibethinus HOM05D000568 ORTHO05D003200 4.0e-18 97.4 196 36.2
MD14G1165100 Malus domestica HOM05D000568 ORTHO05D003200 4.0e-18 97.4 252 34.1
RcHm_v2.0_Chr7g0191441 Rosa chinensis HOM05D000568 ORTHO05D003200 4.0e-18 97.4 199 38.2
COL.COLO4_08506 Corchorus olitorius HOM05D000568 ORTHO05D003200 8.8e-18 96.3 196 37.2
Prupe.5G158700 Prunus persica HOM05D004211 ORTHO05D013939 1.5e-17 95.5 144 38.9
Dinv38482 Davidia involucrata HOM05D000568 ORTHO05D003200 2.6e-17 94.7 203 35.5
Prupe.5G158800 Prunus persica HOM05D004211 ORTHO05D003200 3.4e-17 94.4 158 37.3
Sed0010716 Sechium edule HOM05D000568 ORTHO05D003200 4.4e-17 94.0 196 37.8
TAR622G0447 Trochodendron aralioides HOM05D000568 ORTHO05D003200 5.7e-17 93.6 160 36.9
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.7e-16 92.0 320 29.7
Prupe.5G158300 Prunus persica HOM05D000568 ORTHO05D003200 2.8e-16 91.3 179 34.6
Rhsim08G0183200 Rhododendron simsii HOM05D004211 ORTHO05D036616 1.1e-15 89.4 157 34.4
THA.LOC104803139 Tarenaya hassleriana HOM05D000568 ORTHO05D003200 1.1e-15 89.4 171 38.0
vmacro18307 Vaccinium macrocarpon HOM05D000568 ORTHO05D003200 1.1e-15 89.4 225 32.4
AT3G48440 Arabidopsis thaliana HOM05D000568 ORTHO05D003200 2.4e-15 88.2 200 36.0
Lalb_Chr12g0202081 Lupinus albus HOM05D000568 ORTHO05D003200 5.4e-15 87.0 609 27.3
TWI14G0537 Tripterygium wilfordii HOM05D000568 ORTHO05D003200 5.4e-15 87.0 280 27.9
Thecc.04G026900 Theobroma cacao HOM05D000568 ORTHO05D003200 1.2e-14 85.9 248 29.4
Nn7g38088 Nelumbo nucifera HOM05D004211 ORTHO05D013939 1.6e-14 85.5 247 29.1
Ah.15g095400 Amaranthus hybridus HOM05D000568 ORTHO05D003200 2.7e-14 84.7 286 29.7
CANSAT80G2497 Cannabis sativa HOM05D000568 ORTHO05D003200 4.5e-14 84.0 254 30.7
AL5G27850 Arabidopsis lyrata HOM05D000568 ORTHO05D003200 5.9e-14 83.6 200 35.5
Nitab4.5_0001360g0110 Nicotiana tabacum HOM05D000568 ORTHO05D003200 1.0e-13 82.8 260 29.6
Sed0021120 Sechium edule HOM05D000568 ORTHO05D003200 1.0e-13 82.8 194 35.6
BcaB01g00809 Brassica carinata HOM05D000568 ORTHO05D003200 2.3e-13 81.6 254 31.1
Nitab4.5_0002531g0090 Nicotiana tabacum HOM05D000568 ORTHO05D003200 2.3e-13 81.6 241 29.5
Prupe.5G158400 Prunus persica HOM05D004211 ORTHO05D005559 2.3e-13 81.6 103 44.7
AUR62001266 Chenopodium quinoa HOM05D000568 ORTHO05D003200 6.6e-13 80.1 223 30.0
AUR62025744 Chenopodium quinoa HOM05D000568 ORTHO05D003200 6.6e-13 80.1 273 28.2
RcHm_v2.0_Chr5g0019351 Rosa chinensis HOM05D001162 ORTHO05D003200 1.1e-12 79.3 270 32.6
Peaxi162Scf00089g00842 Petunia axillaris HOM05D000568 ORTHO05D003200 1.9e-12 78.6 199 33.2
Phvul.009G169600 Phaseolus vulgaris HOM05D000568 ORTHO05D003200 3.3e-12 77.8 419 26.7
C09p09250 Brassica napus HOM05D004211 ORTHO05D013939 4.3e-12 77.4 51 66.7
BcaB08g36663 Brassica carinata HOM05D000568 ORTHO05D000628 1.6e-11 75.5 158 31.6
MD06G1159100 Malus domestica HOM05D004211 ORTHO05D036616 1.6e-11 75.5 51 62.7
Oeu011584.2 Olea europaea HOM05D000568 ORTHO05D003200 2.1e-11 75.1 270 28.5
Ca_05568_v3 Cicer arietinum L. HOM05D000568 ORTHO05D003200 2.8e-11 74.7 625 26.4
PGSC0003DMG400015168 Solanum tuberosum HOM05D000568 ORTHO05D003200 4.7e-11 73.9 199 32.2
Carub.0005s1462 Capsella rubella HOM05D000568 ORTHO05D003200 6.1e-11 73.6 196 33.2
Gohir.D09G032000 Gossypium hirsutum HOM05D000568 ORTHO05D003200 6.1e-11 73.6 264 27.7
Gohir.A09G031900 Gossypium hirsutum HOM05D000568 ORTHO05D003200 8.0e-11 73.2 255 29.8
Gorai.006G036900 Gossypium raimondii HOM05D000568 ORTHO05D003200 1.4e-10 72.4 259 28.2
Oeu054657.1 Olea europaea HOM05D000568 ORTHO05D003200 1.4e-10 72.4 172 33.1
MD06G1158900 Malus domestica HOM05D004211 ORTHO05D036616 1.8e-10 72.0 50 60.0
Sopen03g030700 Solanum pennellii HOM05D000568 ORTHO05D003200 2.3e-10 71.6 197 31.5
Sopen06g028140 Solanum pennellii HOM05D000568 ORTHO05D003200 3.0e-10 71.2 198 32.3
EL10Ac7g18057 Beta vulgaris HOM05D000568 ORTHO05D003200 5.2e-10 70.5 107 38.3
Medtr4g104260 Medicago truncatula HOM05D000568 ORTHO05D003200 5.2e-10 70.5 159 37.1
Nitab4.5_0009013g0030 Nicotiana tabacum HOM05D000568 ORTHO05D003200 1.2e-09 69.3 199 31.7
MSTRG.14864 Avicennia marina HOM05D000568 ORTHO05D000628 5.7e-09 67.0 149 31.5
TPR.G37533 Trifolium pratense HOM05D000568 ORTHO05D003200 5.7e-09 67.0 200 34.0
Rhsim12G0171400 Rhododendron simsii HOM05D000568 ORTHO05D003200 9.8e-09 66.2 221 32.1
Actinidia19377 Actinidia chinensis HOM05D000568 ORTHO05D003200 1.3e-08 65.9 267 29.6
Actinidia16196 Actinidia chinensis HOM05D000568 ORTHO05D003200 1.7e-08 65.5 270 27.0
A07p20590 Brassica napus HOM05D015678 ORTHO05D013939 1.7e-08 65.5 70 45.7
A07p20600 Brassica napus HOM05D015678 ORTHO05D013939 1.7e-08 65.5 70 45.7
BraA07t29749Z Brassica rapa HOM05D015678 ORTHO05D013939 1.7e-08 65.5 70 45.7
Nn1g09842 Nelumbo nucifera HOM05D004211 ORTHO05D005559 1.7e-08 65.5 90 37.8
C06p19490 Brassica napus HOM05D015678 ORTHO05D013939 2.2e-08 65.1 70 44.3
Psat5g141360 Pisum sativum HOM05D000568 ORTHO05D003200 3.7e-08 64.3 192 32.3
MBI07_g10940_MAGBIO Magnolia biondii HOM05D004211 ORTHO05D005559 4.9e-08 63.9 398 24.6
Os06g0519400 Oryza sativa ssp. japonica HOM05D004211 ORTHO05D005559 4.9e-08 63.9 41 61.0
Ah.16g106500 Amaranthus hybridus HOM05D004211 ORTHO05D005559 6.4e-08 63.5 109 35.8
CDE05G1779 Ceratophyllum demersum HOM05D000568 ORTHO05D000628 6.4e-08 63.5 115 39.1
Prupe.4G124000 Prunus persica HOM05D004211 ORTHO05D005559 8.3e-08 63.2 93 36.6
BolC6t37143H Brassica oleracea HOM05D015678 ORTHO05D013939 1.4e-07 62.4 70 44.3
CDE10G0346 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 1.4e-07 62.4 116 32.8
CsaV3_7G023160 Cucumis sativus L. HOM05D004211 ORTHO05D005559 1.4e-07 62.4 76 42.1
Lj1g0028025 Lotus japonicus HOM05D000568 ORTHO05D003200 1.4e-07 62.4 157 35.0
SEGI_15894 Sequoiadendron giganteum HOM05D004211 ORTHO05D005559 1.4e-07 62.4 78 39.7
CDE09G0575 Ceratophyllum demersum HOM05D000568 ORTHO05D003200 1.8e-07 62.0 193 25.9
MELO3C012579.2 Cucumis melo HOM05D004211 ORTHO05D005559 1.8e-07 62.0 115 37.4
CDE04G2037 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 2.4e-07 61.6 104 38.5
CBR_g9045 Chara braunii HOM05D000568 ORTHO05D000628 2.4e-07 61.6 48 54.2
Dinv39758 Davidia involucrata HOM05D000568 ORTHO05D000628 2.4e-07 61.6 111 35.1
Nitab4.5_0000003g0920 Nicotiana tabacum HOM05D000568 ORTHO05D003200 2.4e-07 61.6 194 32.0
RcHm_v2.0_Chr7g0191531 Rosa chinensis HOM05D015678 ORTHO05D013939 2.4e-07 61.6 62 46.8
Solyc03g111580.3 Solanum lycopersicum HOM05D000568 ORTHO05D003200 2.4e-07 61.6 371 25.1
TAR371G0438 Trochodendron aralioides HOM05D000568 ORTHO05D003200 2.4e-07 61.6 173 32.9
HanXRQChr07g0190701 Helianthus annuus HOM05D004211 ORTHO05D005559 4.1e-07 60.8 96 41.7
Lj8A191G24 Lonicera japonica HOM05D004211 ORTHO05D005559 4.1e-07 60.8 85 37.6
Sed0019040 Sechium edule HOM05D004211 ORTHO05D005559 4.1e-07 60.8 76 40.8
CBR_g28558 Chara braunii HOM05D000568 ORTHO05D000628 5.4e-07 60.5 100 36.0
Eucgr.F04489 Eucalyptus grandis HOM05D004211 ORTHO05D005559 5.4e-07 60.5 39 59.0
Atru.chr9.997 Acer truncatum HOM05D000568 ORTHO05D003200 7.0e-07 60.1 290 26.9
BcaB01g05266 Brassica carinata HOM05D000568 ORTHO05D000628 7.0e-07 60.1 117 33.3
BolC3t13520H Brassica oleracea HOM05D000568 ORTHO05D000628 7.0e-07 60.1 117 33.3
CANSAT56G2786 Cannabis sativa HOM05D004211 ORTHO05D005559 7.0e-07 60.1 43 51.2
Os06g0520600 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D002038 7.0e-07 60.1 38 60.5
Cpa.g.sc118.25 Carica papaya HOM05D004211 ORTHO05D005559 9.2e-07 59.7 40 57.5
Ciclev10004790m.g Citrus clementina HOM05D004211 ORTHO05D005559 9.2e-07 59.7 49 53.1
ATR0073G009 Amborella trichopoda HOM05D004211 ORTHO05D005559 1.2e-06 59.3 407 25.1
BraA03t10218Z Brassica rapa HOM05D000568 ORTHO05D000628 1.2e-06 59.3 36 58.3
Atru.chr1.3 Acer truncatum HOM05D004211 ORTHO05D005559 1.6e-06 58.9 40 55.0
BraA06t25005Z Brassica rapa HOM05D000568 ORTHO05D003200 1.6e-06 58.9 34 67.6
CAN.G1046.2 Capsicum annuum HOM05D000568 ORTHO05D003200 1.6e-06 58.9 208 26.4
Sabra02G0171300 Salix brachista HOM05D000568 ORTHO05D000628 1.6e-06 58.9 112 33.0
EL10Ac2g03339 Beta vulgaris HOM05D004211 ORTHO05D005559 2.0e-06 58.5 65 41.5
A03p26100 Brassica napus HOM05D000568 ORTHO05D000628 2.0e-06 58.5 58 44.8
C03p31130 Brassica napus HOM05D000568 ORTHO05D000628 2.0e-06 58.5 58 44.8
BolC3t15460H Brassica oleracea HOM05D000568 ORTHO05D000628 2.0e-06 58.5 58 44.8
BraA03t11825Z Brassica rapa HOM05D000568 ORTHO05D000628 2.0e-06 58.5 58 44.8
Medtr8g446930 Medicago truncatula HOM05D004211 ORTHO05D005559 2.0e-06 58.5 77 36.4
CBR_g24052 Chara braunii HOM05D004211 ORTHO05D005559 2.7e-06 58.2 382 23.8
HanXRQChr09g0258021 Helianthus annuus HOM05D000568 ORTHO05D003200 2.7e-06 58.2 74 40.5
Peaxi162Scf00763g00337 Petunia axillaris HOM05D000568 ORTHO05D003200 2.7e-06 58.2 246 28.0
Psat4g064560 Pisum sativum HOM05D000568 ORTHO05D003200 2.7e-06 58.2 586 23.9
TWI38G0603 Tripterygium wilfordii HOM05D004211 ORTHO05D005559 2.7e-06 58.2 39 56.4
TWI38G1531 Tripterygium wilfordii HOM05D004211 ORTHO05D005559 2.7e-06 58.2 39 56.4
arahy.Tifrunner.gnm1.ann1.0NLM3R Arachis hypogaea HOM05D004211 ORTHO05D005559 3.5e-06 57.8 106 34.9
Dinv19567 Davidia involucrata HOM05D004211 ORTHO05D005559 3.5e-06 57.8 40 55.0
Hma1.2p1_0151F.1_g066910 Hydrangea macrophylla HOM05D004211 ORTHO05D005559 3.5e-06 57.8 77 37.7
Lsat_1_v5_gn_7_61541 Lactuca sativa HOM05D004211 ORTHO05D005559 3.5e-06 57.8 141 29.8
CARHR157200 Cardamine hirsuta HOM05D000568 ORTHO05D003200 4.6e-06 57.4 31 64.5
SalBow4G3214 Salvia bowleyana HOM05D000441 ORTHO05D354046 4.6e-06 57.4 38 60.5
HPP92_011783 Vanilla planifolia HOM05D000568 ORTHO05D000628 4.6e-06 57.4 48 50.0
C07p50420 Brassica napus HOM05D000005 ORTHO05D011295 5.9e-06 57.0 33 63.6
BolC7t45544H Brassica oleracea HOM05D000005 ORTHO05D011295 5.9e-06 57.0 33 63.6
CAN.G1591.5 Capsicum annuum HOM05D000011 ORTHO05D000018 5.9e-06 57.0 63 49.2
Cfa017780 Carpinus fangiana HOM05D004211 ORTHO05D005559 5.9e-06 57.0 56 51.8
Haze_18449 Corylus avellana HOM05D004211 ORTHO05D005559 5.9e-06 57.0 56 51.8
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 5.9e-06 57.0 40 52.5
Thecc.07G193200 Theobroma cacao HOM05D004211 ORTHO05D005559 5.9e-06 57.0 40 55.0
Aqoxy1G01339 Aquilegia oxysepala HOM05D004211 ORTHO05D005559 7.8e-06 56.6 444 24.3
arahy.Tifrunner.gnm1.ann1.ZP601Q Arachis hypogaea HOM05D004211 ORTHO05D005559 7.8e-06 56.6 106 34.9
MSTRG.14576 Avicennia marina HOM05D004211 ORTHO05D005559 7.8e-06 56.6 29 72.4
BcaC01g05013 Brassica carinata HOM05D000568 ORTHO05D000628 7.8e-06 56.6 43 53.5
Gohir.A13G127000 Gossypium hirsutum HOM05D004211 ORTHO05D005559 7.8e-06 56.6 40 52.5
Gohir.D13G130600 Gossypium hirsutum HOM05D004211 ORTHO05D005559 7.8e-06 56.6 40 52.5
Gorai.013G146700 Gossypium raimondii HOM05D004211 ORTHO05D005559 7.8e-06 56.6 40 52.5
Os01g0257400 Oryza sativa ssp. japonica HOM05D000568 ORTHO05D000628 7.8e-06 56.6 30 66.7
Pp3c1_12940 Physcomitrium patens HOM05D004211 ORTHO05D005559 7.8e-06 56.6 42 52.4
vmacro12156 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 7.8e-06 56.6 36 63.9
vmacro15249 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 7.8e-06 56.6 179 29.6


User provided reference genes

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