Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 0.0e+00 1171.8 658 100.0
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.4e-292 1009.2 684 87.7
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 1.1e-210 737.3 730 64.2
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.9e-207 726.5 672 69.3
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 3.5e-206 722.2 670 67.2
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 6.0e-206 721.5 670 66.9
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 7.3e-204 714.5 672 67.3
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 3.6e-203 712.2 669 63.5
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 7.6e-201 704.5 663 67.4
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.3e-200 703.7 672 63.8
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 2.1e-195 686.4 672 66.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.9e-191 673.3 669 64.1
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 9.4e-143 511.5 673 52.6
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.7e-139 500.7 646 53.9
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.7e-139 499.6 673 47.8
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 7.7e-137 491.9 670 50.9
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.2e-135 486.5 679 47.1
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 5.5e-135 485.7 671 47.4
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.4e-135 485.0 677 46.5
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 3.0e-133 479.9 662 47.9
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 4.0e-133 479.6 699 49.6
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 8.8e-133 478.4 674 50.6
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 5.7e-132 475.7 708 45.1
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.3e-131 474.6 668 47.0
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 1.7e-131 474.2 677 48.2
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-130 471.1 708 44.9
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.2e-129 468.0 672 49.3
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 4.5e-129 466.1 673 47.1
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.7e-128 464.2 701 46.8
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 1.7e-128 464.2 695 46.5
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 3.8e-128 463.0 672 46.9
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.5e-128 462.2 672 46.7
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.9e-127 460.7 668 46.7
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.9e-127 460.7 669 45.7
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 2.5e-127 460.3 673 47.1
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 4.2e-127 459.5 659 49.0
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 2.1e-126 457.2 671 46.6
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 3.6e-126 456.4 488 57.2
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 2.3e-125 453.8 665 45.4
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 4.0e-125 453.0 695 47.5
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 9.8e-124 448.4 676 46.0
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.3e-123 448.0 684 45.3
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.4e-122 444.5 675 44.6
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.8e-122 444.1 682 48.8
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 3.1e-122 443.4 708 44.5
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 7.0e-122 442.2 679 44.5
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.2e-121 441.4 704 42.6
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 5.0e-120 436.0 700 43.7
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 6.6e-120 435.6 684 44.9
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 1.5e-119 434.5 688 44.6
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.3e-119 433.0 670 47.6
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 4.7e-118 429.5 687 44.3
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 2.3e-117 427.2 692 43.8
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 3.0e-117 426.8 661 44.6
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 4.4e-116 422.9 737 42.2
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 2.2e-115 420.6 674 44.1
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 4.9e-115 419.5 692 42.9
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 8.3e-115 418.7 633 44.9
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 3.2e-114 416.8 671 44.0
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 7.0e-114 415.6 696 46.6
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 7.8e-113 412.1 674 42.6
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.0e-112 411.8 681 45.7
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 3.0e-112 410.2 682 42.2
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 7.3e-111 405.6 668 46.1
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 7.3e-111 405.6 687 41.0
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.6e-110 403.3 680 41.6
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 8.0e-110 402.1 337 67.7
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.0e-109 401.7 343 70.3
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 5.2e-109 399.4 681 42.9
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.2e-109 399.4 677 44.9
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 7.5e-108 395.6 708 41.4
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 2.9e-107 393.7 688 42.2
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 2.9e-107 393.7 640 43.1
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 6.4e-107 392.5 627 43.2
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.1e-106 389.8 700 42.0
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 5.4e-106 389.4 676 42.6
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 5.4e-106 389.4 637 44.6
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 7.8e-105 385.6 400 55.0
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.5e-103 381.3 634 43.1
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.9e-103 380.9 679 44.5
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 9.5e-103 378.6 683 40.6
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.2e-102 378.3 673 43.7
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.4e-101 374.8 611 43.4
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 5.2e-101 372.9 656 42.5
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 6.8e-101 372.5 651 42.1
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.6e-100 370.5 696 42.4
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 9.8e-100 368.6 680 43.5
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 3.7e-99 366.7 596 45.8
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 6.4e-99 365.9 391 56.0
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 8.3e-99 365.5 735 36.9
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 6.0e-97 359.4 616 41.7
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.3e-96 358.2 625 40.8
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.5e-95 354.8 680 42.9
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.5e-95 354.0 559 46.9
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.0e-88 332.0 565 42.8
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 4.3e-87 326.6 439 52.2
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 3.8e-83 313.5 365 50.4
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 8.4e-83 312.4 616 42.2
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.1e-82 312.0 412 46.6
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 3.2e-82 310.5 516 42.6
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 7.8e-81 305.8 674 38.3
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 5.4e-74 283.1 331 48.3
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 9.0e-69 265.8 686 34.4
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 4.5e-52 210.3 220 55.5
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.2e-49 202.2 441 36.5
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.7e-48 196.4 432 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.9e-47 194.9 324 39.2
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 5.9e-44 183.3 457 33.3
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.9e-43 181.0 219 47.9
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.0e-40 172.6 221 51.1
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.0e-40 172.6 128 68.8
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 9.7e-39 166.0 569 30.6
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.8e-38 164.5 123 69.1
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 8.2e-38 162.9 495 27.9
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.8e-37 161.8 112 71.4
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.5e-36 158.7 487 29.8
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 4.5e-36 157.1 560 28.2
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 7.7e-36 156.4 290 39.7
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.8e-35 154.1 112 67.9
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 6.1e-33 146.7 115 67.8
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 6.7e-32 143.3 196 47.4
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.7e-30 137.5 112 69.6
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 2.4e-29 134.8 332 34.9
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 9.1e-29 132.9 113 69.0
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.1e-26 125.9 476 31.1
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 4.0e-24 117.5 93 68.8
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 5.2e-24 117.1 89 71.9
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.3e-22 112.5 93 67.7
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.7e-22 112.1 109 50.5
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.2e-22 111.7 203 36.9
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 3.8e-19 100.9 84 61.9
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.0e-19 100.5 227 29.5
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-15 89.4 127 45.7
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 7.5e-15 86.7 137 42.3
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 8.3e-14 83.2 137 38.0
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 1.4e-13 82.4 400 26.8
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 5.4e-13 80.5 136 38.2
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 5.5e-10 70.5 150 30.7
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.5e-07 62.4 51 60.8
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 6.3e-06 57.0 53 50.9
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 8.3e-06 56.6 56 44.6


User provided reference genes

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