Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TFXT31 Arachis hypogaea HOM05D003125 ORTHO05D082493 2.8e-147 525.4 297 100.0
arahy.Tifrunner.gnm1.ann1.84DVUA Arachis hypogaea HOM05D003125 ORTHO05D003556 1.6e-12 77.8 88 52.3
arahy.Tifrunner.gnm1.ann1.ZBJ4Q7 Arachis hypogaea HOM05D003125 ORTHO05D003556 3.5e-12 76.6 51 74.5
TWI09G0995 Tripterygium wilfordii HOM05D003125 ORTHO05D003556 3.5e-12 76.6 51 72.5
Hma1.2p1_1042F.1_g251120 Hydrangea macrophylla HOM05D003125 ORTHO05D003556 1.7e-11 74.3 51 70.6
Manes.10G139200 Manihot esculenta HOM05D003125 ORTHO05D003556 1.7e-11 74.3 51 72.5
vmacro13690 Vaccinium macrocarpon HOM05D003125 ORTHO05D003556 1.7e-11 74.3 95 47.4
Duzib133G1065 Durio zibethinus HOM05D003125 ORTHO05D003556 2.3e-11 73.9 51 72.5
PGR031G3182 Punica granatum HOM05D003125 ORTHO05D003556 2.3e-11 73.9 51 66.7
CANSAT80G2645 Cannabis sativa HOM05D003125 ORTHO05D003556 3.0e-11 73.6 51 72.5
THA.LOC104819089 Tarenaya hassleriana HOM05D003125 ORTHO05D003556 3.0e-11 73.6 51 68.6
THA.LOC104826685 Tarenaya hassleriana HOM05D003125 ORTHO05D003556 3.0e-11 73.6 51 68.6
Duzib138G1557 Durio zibethinus HOM05D003125 ORTHO05D003556 3.9e-11 73.2 51 70.6
Sabra09G0042800 Salix brachista HOM05D003125 ORTHO05D003556 3.9e-11 73.2 51 70.6
Sed0006103 Sechium edule HOM05D003125 ORTHO05D003556 3.9e-11 73.2 51 68.6
Thecc.01G407400 Theobroma cacao HOM05D003125 ORTHO05D003556 3.9e-11 73.2 51 70.6
Actinidia31083 Actinidia chinensis HOM05D003125 ORTHO05D003556 5.0e-11 72.8 51 68.6
COL.COLO4_04876 Corchorus olitorius HOM05D003125 ORTHO05D003556 5.0e-11 72.8 51 70.6
Nn2g15255 Nelumbo nucifera HOM05D003125 ORTHO05D003556 5.0e-11 72.8 51 68.6
Peaxi162Scf00694g00116 Petunia axillaris HOM05D003125 ORTHO05D003556 5.0e-11 72.8 51 68.6
Rhsim07G0058100 Rhododendron simsii HOM05D003125 ORTHO05D003556 5.0e-11 72.8 51 68.6
Cpa.g.sc125.33 Carica papaya HOM05D003125 ORTHO05D003556 6.6e-11 72.4 51 68.6
Haze_03157 Corylus avellana HOM05D003125 ORTHO05D003556 6.6e-11 72.4 51 68.6
QL04p008916 Quercus lobata HOM05D003125 ORTHO05D003556 6.6e-11 72.4 51 68.6
CiPaw.14G002200 Carya illinoinensis HOM05D003125 ORTHO05D003556 8.6e-11 72.0 51 66.7
Gohir.A08G143000 Gossypium hirsutum HOM05D003125 ORTHO05D003556 8.6e-11 72.0 51 72.5
Gohir.D08G163900 Gossypium hirsutum HOM05D003125 ORTHO05D003556 8.6e-11 72.0 51 72.5
Gorai.004G170800 Gossypium raimondii HOM05D003125 ORTHO05D003556 8.6e-11 72.0 51 72.5
CiPaw.13G007500 Carya illinoinensis HOM05D003125 ORTHO05D003556 1.1e-10 71.6 51 68.6
Duzib268G1636 Durio zibethinus HOM05D003125 ORTHO05D003556 1.1e-10 71.6 51 68.6
Lj9A639T50 Lonicera japonica HOM05D003125 ORTHO05D003556 1.1e-10 71.6 51 66.7
Psat5g210720 Pisum sativum HOM05D003125 ORTHO05D003556 1.1e-10 71.6 51 66.7
TPR.G28381 Trifolium pratense HOM05D003125 ORTHO05D003556 1.1e-10 71.6 51 68.6
Ca_14502_v3 Cicer arietinum L. HOM05D003125 ORTHO05D003556 1.5e-10 71.2 51 66.7
Potri.009G058200 Populus trichocarpa HOM05D003125 ORTHO05D003556 1.5e-10 71.2 51 70.6
VMungo1080G1073 Vigna mungo HOM05D003125 ORTHO05D003556 1.5e-10 71.2 50 66.0
VMungo1127G0451 Vigna mungo HOM05D003125 ORTHO05D003556 1.5e-10 71.2 51 68.6
ClCG09G003930 Citrullus lanatus HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 66.7
Dinv09323 Davidia involucrata HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 66.7
Gohir.D08G064700 Gossypium hirsutum HOM05D003125 ORTHO05D003556 1.9e-10 70.9 54 64.8
Manes.07G008300 Manihot esculenta HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 68.6
Nitab4.5_0000707g0200 Nicotiana tabacum HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 64.7
Nitab4.5_0008441g0030 Nicotiana tabacum HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 64.7
Oeu006555.1 Olea europaea HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 64.7
Potri.001G263400 Populus trichocarpa HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 68.6
Sabra16G0161700 Salix brachista HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 68.6
TAR633G0697 Trochodendron aralioides HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 66.7
TAR633G1408 Trochodendron aralioides HOM05D003125 ORTHO05D003556 1.9e-10 70.9 51 66.7
Actinidia19411 Actinidia chinensis HOM05D003125 ORTHO05D003556 2.5e-10 70.5 51 66.7
MELO3C023571.2 Cucumis melo HOM05D003125 ORTHO05D003556 2.5e-10 70.5 51 66.7
Gohir.A08G055400 Gossypium hirsutum HOM05D003125 ORTHO05D003556 2.5e-10 70.5 54 64.8
Gorai.004G067000 Gossypium raimondii HOM05D003125 ORTHO05D003556 2.5e-10 70.5 54 64.8
Medtr3g033000 Medicago truncatula HOM05D003125 ORTHO05D003556 2.5e-10 70.5 66 56.1
Oeu045625.1 Olea europaea HOM05D003125 ORTHO05D003556 2.5e-10 70.5 51 64.7
SalBow5G4283 Salvia bowleyana HOM05D003125 ORTHO05D003556 2.5e-10 70.5 51 64.7
TAR636G0199 Trochodendron aralioides HOM05D003125 ORTHO05D003556 2.5e-10 70.5 51 66.7
Ciclev10031331m.g Citrus clementina HOM05D003125 ORTHO05D003556 3.3e-10 70.1 51 66.7
Glyma.15G276500 Glycine max HOM05D003125 ORTHO05D003556 3.3e-10 70.1 50 66.0
Phvul.005G023400 Phaseolus vulgaris HOM05D003125 ORTHO05D003556 3.3e-10 70.1 50 64.0
Cc00_g03310 Coffea canephora HOM05D003125 ORTHO05D003556 4.3e-10 69.7 51 64.7
CsaV3_7G030830 Cucumis sativus L. HOM05D003125 ORTHO05D003556 4.3e-10 69.7 51 64.7
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 5.6e-10 69.3 70 72.9
CSS0015110 Camellia sinensis var. sinensis HOM05D003125 ORTHO05D003556 5.6e-10 69.3 51 64.7
CSS0020360 Camellia sinensis var. sinensis HOM05D003125 ORTHO05D003556 5.6e-10 69.3 51 64.7
Glyma.10G090700 Glycine max HOM05D003125 ORTHO05D003556 5.6e-10 69.3 51 60.8
Oeu049486.1 Olea europaea HOM05D003125 ORTHO05D003556 5.6e-10 69.3 51 62.7
PSO339G2898 Papaver somniferum HOM05D003125 ORTHO05D003556 5.6e-10 69.3 51 66.7
GSVIVG01032163001 Vitis vinifera HOM05D003125 ORTHO05D003556 5.6e-10 69.3 51 62.7
Atru.chr11.2582 Acer truncatum HOM05D003125 ORTHO05D003556 7.3e-10 68.9 51 66.7
arahy.Tifrunner.gnm1.ann1.76NMAH Arachis hypogaea HOM05D003125 ORTHO05D003556 7.3e-10 68.9 51 64.7
arahy.Tifrunner.gnm1.ann1.Q49G2C Arachis hypogaea HOM05D003125 ORTHO05D003556 7.3e-10 68.9 51 64.7
Eucgr.G03359 Eucalyptus grandis HOM05D003125 ORTHO05D003556 7.3e-10 68.9 62 59.7
Aqoxy1G00266 Aquilegia oxysepala HOM05D003125 ORTHO05D003556 9.5e-10 68.6 67 55.2
AUR62023086 Chenopodium quinoa HOM05D003125 ORTHO05D003556 9.5e-10 68.6 51 62.7
Dinv43415 Davidia involucrata HOM05D003125 ORTHO05D003556 9.5e-10 68.6 51 66.7
CARHR199740 Cardamine hirsuta HOM05D003125 ORTHO05D003556 1.2e-09 68.2 51 62.7
Lalb_Chr25g0282511 Lupinus albus HOM05D003125 ORTHO05D003556 1.2e-09 68.2 54 61.1
MD02G1306200 Malus domestica HOM05D003125 ORTHO05D003556 1.2e-09 68.2 51 64.7
Prupe.2G020100 Prunus persica HOM05D003125 ORTHO05D003556 1.6e-09 67.8 51 64.7
Solyc01g087590.3 Solanum lycopersicum HOM05D003125 ORTHO05D003556 1.6e-09 67.8 51 62.7
Sopen01g034560 Solanum pennellii HOM05D003125 ORTHO05D003556 1.6e-09 67.8 51 62.7
PGSC0003DMG400006854 Solanum tuberosum HOM05D003125 ORTHO05D003556 1.6e-09 67.8 51 62.7
unitig_22.g5324 Utricularia gibba HOM05D003125 ORTHO05D003556 1.6e-09 67.8 51 62.7
MSTRG.20567 Avicennia marina HOM05D003125 ORTHO05D003556 2.1e-09 67.4 50 62.0
Thhalv10015601m.g Eutrema salsugineum HOM05D003125 ORTHO05D003556 2.1e-09 67.4 51 62.7
Lj3g0002070 Lotus japonicus HOM05D003125 ORTHO05D003556 2.1e-09 67.4 51 62.7
Sc10g0000220 Simmondsia chinensis HOM05D003125 ORTHO05D003556 2.1e-09 67.4 51 62.7
AL6G24310 Arabidopsis lyrata HOM05D003125 ORTHO05D003556 2.8e-09 67.0 51 62.7
DCAR_029692 Daucus carota HOM05D003125 ORTHO05D003556 2.8e-09 67.0 50 62.0
Migut.N01787 Erythranthe guttata HOM05D003125 ORTHO05D003556 2.8e-09 67.0 66 54.5
FAN01G2660 Fragaria x ananassa HOM05D003125 ORTHO05D003556 2.8e-09 67.0 51 64.7
SHI04079 Sapria himalayana HOM05D003125 ORTHO05D003556 2.8e-09 67.0 51 60.8
SGA_v2.0_scaffold119G32751 Striga asiatica HOM05D003125 ORTHO05D003556 2.8e-09 67.0 51 60.8
Ah.16g100630 Amaranthus hybridus HOM05D003125 ORTHO05D003556 3.6e-09 66.6 54 59.3
AT5G13700 Arabidopsis thaliana HOM05D003125 ORTHO05D003556 3.6e-09 66.6 51 62.7
SalBow6G2655 Salvia bowleyana HOM05D003125 ORTHO05D003556 3.6e-09 66.6 54 57.4
AUR62009403 Chenopodium quinoa HOM05D003125 ORTHO05D003556 4.7e-09 66.2 51 60.8
MD07G1018400 Malus domestica HOM05D003125 ORTHO05D003556 4.7e-09 66.2 51 62.7
PSO384G3495 Papaver somniferum HOM05D003125 ORTHO05D003556 6.2e-09 65.9 51 62.7
FAN03G3008 Fragaria x ananassa HOM05D003125 ORTHO05D003556 8.0e-09 65.5 51 64.7
FAN10G3058 Fragaria x ananassa HOM05D003125 ORTHO05D003556 8.0e-09 65.5 51 64.7
Lsat_1_v5_gn_1_105400 Lactuca sativa HOM05D003125 ORTHO05D003556 8.0e-09 65.5 51 60.8
BcaB01g05341 Brassica carinata HOM05D003125 ORTHO05D003556 1.1e-08 65.1 51 58.8
FvH4_7g01450 Fragaria vesca HOM05D003125 ORTHO05D003556 1.1e-08 65.1 51 62.7
FAN06G2755 Fragaria x ananassa HOM05D003125 ORTHO05D003556 1.1e-08 65.1 51 62.7
Glyma.09G227500 Glycine max HOM05D003125 ORTHO05D003556 1.1e-08 65.1 51 60.8
Sp6g30320 Schrenkiella parvula HOM05D003125 ORTHO05D003556 1.1e-08 65.1 51 60.8
ECA248G1432 Erigeron canadensis HOM05D003125 ORTHO05D003556 1.4e-08 64.7 51 60.8
GSVIVG01013726001 Vitis vinifera HOM05D003125 ORTHO05D003556 1.4e-08 64.7 76 44.7
C03p07150 Brassica napus HOM05D003125 ORTHO05D003556 1.8e-08 64.3 51 58.8
BolC3t13214H Brassica oleracea HOM05D003125 ORTHO05D003556 1.8e-08 64.3 51 58.8
RcHm_v2.0_Chr1g0317291 Rosa chinensis HOM05D003125 ORTHO05D003556 2.3e-08 63.9 51 60.8
Eucgr.G03375 Eucalyptus grandis HOM05D003125 ORTHO05D003556 3.1e-08 63.5 66 48.5
A03p06140 Brassica napus HOM05D003125 ORTHO05D003556 4.0e-08 63.2 51 56.9
BraA03t09946Z Brassica rapa HOM05D003125 ORTHO05D003556 4.0e-08 63.2 51 56.9
GSVIVG01013732001 Vitis vinifera HOM05D003125 ORTHO05D003556 6.8e-08 62.4 50 54.0
ATR0626G261 Amborella trichopoda HOM05D003125 ORTHO05D003556 8.9e-08 62.0 51 60.8
Carub.0006s1186 Capsella rubella HOM05D003125 ORTHO05D003556 1.2e-07 61.6 51 58.8
RcHm_v2.0_Chr3g0457801 Rosa chinensis HOM05D003125 ORTHO05D003556 1.5e-07 61.2 52 55.8
RcHm_v2.0_Chr4g0413091 Rosa chinensis HOM05D003125 ORTHO05D003556 1.5e-07 61.2 56 51.8
Aqoxy3G01020 Aquilegia oxysepala HOM05D003125 ORTHO05D003556 4.4e-07 59.7 53 52.8
MBI10_g11077_MAGBIO Magnolia biondii HOM05D003125 ORTHO05D003556 4.4e-07 59.7 50 54.0
PSO017G2679 Papaver somniferum HOM05D003125 ORTHO05D003556 5.8e-07 59.3 51 52.9
HanXRQChr14g0447881 Helianthus annuus HOM05D003125 ORTHO05D003556 7.5e-07 58.9 51 52.9
TAR374G1230 Trochodendron aralioides HOM05D003125 ORTHO05D003556 7.5e-07 58.9 49 55.1
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 9.8e-07 58.5 37 81.1
ATR0730G005 Amborella trichopoda HOM05D003125 ORTHO05D003556 1.3e-06 58.2 51 51.0
PSO017G3191 Papaver somniferum HOM05D003125 ORTHO05D003556 1.3e-06 58.2 50 54.0
Aqoxy3G01019 Aquilegia oxysepala HOM05D003125 ORTHO05D003556 1.7e-06 57.8 50 52.0
GSVIVG01013729001 Vitis vinifera HOM05D003125 ORTHO05D003556 1.7e-06 57.8 50 54.0
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 2.2e-06 57.4 58 79.3
SEGI_05323 Sequoiadendron giganteum HOM05D003125 ORTHO05D003556 2.2e-06 57.4 46 52.2
SEGI_34451 Sequoiadendron giganteum HOM05D003125 ORTHO05D003556 2.2e-06 57.4 46 52.2
PSO478G4216 Papaver somniferum HOM05D003125 ORTHO05D003556 2.9e-06 57.0 50 52.0
Nn4g22792 Nelumbo nucifera HOM05D003125 ORTHO05D003556 4.9e-06 56.2 50 52.0
Nn4g22793 Nelumbo nucifera HOM05D003125 ORTHO05D003556 4.9e-06 56.2 50 52.0
Os09g0368200 Oryza sativa ssp. japonica HOM05D003125 ORTHO05D003556 4.9e-06 56.2 51 49.0
SEGI_08186 Sequoiadendron giganteum HOM05D003125 ORTHO05D003556 4.9e-06 56.2 46 54.3
EL10Ac7g18114 Beta vulgaris HOM05D003125 ORTHO05D003556 6.4e-06 55.8 51 52.9
ATR0712G020 Amborella trichopoda HOM05D003125 ORTHO05D003556 8.3e-06 55.5 46 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2958 Anthoceros agrestis HOM05D003125 ORTHO05D003556 8.3e-06 55.5 46 54.3
Os09g0368500 Oryza sativa ssp. japonica HOM05D003125 ORTHO05D003556 8.3e-06 55.5 51 49.0
PSO478G2510 Papaver somniferum HOM05D003125 ORTHO05D003556 8.3e-06 55.5 51 47.1


User provided reference genes

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