Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T4G2XP Arachis hypogaea HOM05D000021 ORTHO05D000010 2.1e-76 290.0 312 100.0
arahy.Tifrunner.gnm1.ann1.J6FSGL Arachis hypogaea HOM05D000021 ORTHO05D000010 2.2e-25 120.6 286 76.6
arahy.Tifrunner.gnm1.ann1.Y1KQLC Arachis hypogaea HOM05D000021 ORTHO05D000010 2.1e-20 104.0 286 72.7
arahy.Tifrunner.gnm1.ann1.AXP22Y Arachis hypogaea HOM05D000021 ORTHO05D000010 4.0e-19 99.8 286 71.0
Medtr1g029940 Medicago truncatula HOM05D000021 ORTHO05D000010 5.8e-18 95.9 100 48.0
arahy.Tifrunner.gnm1.ann1.IR5FBL Arachis hypogaea HOM05D000021 ORTHO05D000010 1.2e-15 88.2 102 46.1
arahy.Tifrunner.gnm1.ann1.KXV2N3 Arachis hypogaea HOM05D000021 ORTHO05D000010 1.3e-14 84.7 102 45.1
arahy.Tifrunner.gnm1.ann1.DC71XN Arachis hypogaea HOM05D000021 ORTHO05D000010 5.1e-14 82.8 101 44.6
FAN14G2884 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.3e-13 79.7 99 41.4
arahy.Tifrunner.gnm1.ann1.KJZF9B Arachis hypogaea HOM05D000021 ORTHO05D000010 7.4e-13 79.0 103 43.7
arahy.Tifrunner.gnm1.ann1.K0N9RV Arachis hypogaea HOM05D000021 ORTHO05D000010 8.2e-12 75.5 286 69.6
FAN09G3039 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.4e-11 74.7 99 40.4
Medtr5g082920 Medicago truncatula HOM05D000021 ORTHO05D000010 2.4e-11 73.9 100 61.0
MD12G1170300 Malus domestica HOM05D000021 ORTHO05D000010 5.3e-11 72.8 102 39.2
arahy.Tifrunner.gnm1.ann1.NWES2J Arachis hypogaea HOM05D000021 ORTHO05D000010 6.9e-11 72.4 286 69.2
MD04G1118700 Malus domestica HOM05D000021 ORTHO05D000010 9.0e-11 72.0 99 50.5
MD04G1110500 Malus domestica HOM05D000021 ORTHO05D000010 1.5e-10 71.2 100 41.0
MD00G1062800 Malus domestica HOM05D000021 ORTHO05D000010 2.0e-10 70.9 100 41.0
MD07G1219700 Malus domestica HOM05D000021 ORTHO05D000010 2.0e-10 70.9 100 41.0
Glyma.18G199200 Glycine max HOM05D000021 ORTHO05D000010 2.6e-10 70.5 100 46.0
MD04G1041600 Malus domestica HOM05D000021 ORTHO05D000010 4.5e-10 69.7 99 47.5
Thecc.10G022200 Theobroma cacao HOM05D000021 ORTHO05D000010 4.5e-10 69.7 102 54.9
Ciclev10013853m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.9e-10 69.3 100 34.0
BcaB01g00947 Brassica carinata HOM05D000021 ORTHO05D000010 7.6e-10 68.9 99 35.4
MD11G1106800 Malus domestica HOM05D000021 ORTHO05D000010 7.6e-10 68.9 100 37.0
arahy.Tifrunner.gnm1.ann1.6J1WII Arachis hypogaea HOM05D000021 ORTHO05D000010 1.0e-09 68.6 44 72.7
Lj3P711T17 Lonicera japonica HOM05D000021 ORTHO05D000010 1.0e-09 68.6 103 35.0
MD01G1151000 Malus domestica HOM05D000021 ORTHO05D000010 1.0e-09 68.6 100 38.0
Sabra11G0082900 Salix brachista HOM05D000021 ORTHO05D000010 1.3e-09 68.2 106 36.8
QL04p020847 Quercus lobata HOM05D000021 ORTHO05D000010 2.2e-09 67.4 100 39.0
Prupe.6G248200 Prunus persica HOM05D000021 ORTHO05D000010 3.8e-09 66.6 100 36.0
Thecc.05G018800 Theobroma cacao HOM05D000021 ORTHO05D000010 5.0e-09 66.2 96 36.5
Gorai.009G435600 Gossypium raimondii HOM05D000021 ORTHO05D000010 6.5e-09 65.9 114 51.8
QL04p035400 Quercus lobata HOM05D000021 ORTHO05D000010 6.5e-09 65.9 99 49.5
Eucgr.F02272 Eucalyptus grandis HOM05D000021 ORTHO05D000010 8.5e-09 65.5 103 36.9
Glyma.14G060300 Glycine max HOM05D000021 ORTHO05D000010 8.5e-09 65.5 100 57.0
MD07G1308700 Malus domestica HOM05D000021 ORTHO05D000010 8.5e-09 65.5 100 37.0
Peaxi162Scf00391g00321 Petunia axillaris HOM05D000021 ORTHO05D000010 1.4e-08 64.7 106 36.8
Potri.008G007866 Populus trichocarpa HOM05D000021 ORTHO05D000010 1.4e-08 64.7 101 38.6
Prupe.2G116200 Prunus persica HOM05D000021 ORTHO05D000010 1.4e-08 64.7 103 36.9
Sed0005843 Sechium edule HOM05D000021 ORTHO05D000010 1.4e-08 64.7 104 32.7
QL04p035419 Quercus lobata HOM05D000021 ORTHO05D000010 1.9e-08 64.3 99 49.5
arahy.Tifrunner.gnm1.ann1.6M74BY Arachis hypogaea HOM05D000021 ORTHO05D000010 2.5e-08 63.9 104 38.5
MD01G1151600 Malus domestica HOM05D000021 ORTHO05D000010 2.5e-08 63.9 99 39.4
MD02G1224600 Malus domestica HOM05D000021 ORTHO05D000010 2.5e-08 63.9 99 38.4
PSO013G0212 Papaver somniferum HOM05D000021 ORTHO05D000010 2.5e-08 63.9 98 35.7
PSO782G5653 Papaver somniferum HOM05D000021 ORTHO05D000010 2.5e-08 63.9 93 47.3
MD07G1218000 Malus domestica HOM05D000021 ORTHO05D000010 3.2e-08 63.5 101 35.6
MD07G1219300 Malus domestica HOM05D000021 ORTHO05D000010 3.2e-08 63.5 100 39.0
MD11G1106200 Malus domestica HOM05D000021 ORTHO05D000010 3.2e-08 63.5 100 39.0
CSS0004183 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 4.2e-08 63.2 105 35.2
MD01G1151900 Malus domestica HOM05D000021 ORTHO05D000010 4.2e-08 63.2 100 37.0
MD04G1150000 Malus domestica HOM05D000021 ORTHO05D000010 4.2e-08 63.2 106 36.8
MD04G1159100 Malus domestica HOM05D000021 ORTHO05D000010 5.5e-08 62.8 100 35.0
Manes.10G015515 Manihot esculenta HOM05D000021 ORTHO05D000010 5.5e-08 62.8 101 41.6
Manes.10G015729 Manihot esculenta HOM05D000021 ORTHO05D000010 5.5e-08 62.8 101 41.6
Lj4g0028000 Lotus japonicus HOM05D000021 ORTHO05D000010 7.2e-08 62.4 47 63.8
QL04p020337 Quercus lobata HOM05D000021 ORTHO05D000010 7.2e-08 62.4 106 44.3
Oeu009741.1 Olea europaea HOM05D000021 ORTHO05D000010 9.3e-08 62.0 96 33.3
Potri.016G114400 Populus trichocarpa HOM05D000021 ORTHO05D000010 9.3e-08 62.0 105 53.3
Haze_10842 Corylus avellana HOM05D000021 ORTHO05D000010 1.2e-07 61.6 101 33.7
FAN06G1786 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.2e-07 61.6 110 35.5
Ciclev10030587m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.6e-07 61.2 99 36.4
Gorai.009G436200 Gossypium raimondii HOM05D000021 ORTHO05D000010 1.6e-07 61.2 93 55.9
MD04G1159000 Malus domestica HOM05D000021 ORTHO05D000010 1.6e-07 61.2 100 35.0
Psat2g034160 Pisum sativum HOM05D000021 ORTHO05D000010 1.6e-07 61.2 100 56.0
QL12p027370 Quercus lobata HOM05D000021 ORTHO05D000010 1.6e-07 61.2 99 43.4
Sabra11G0077900 Salix brachista HOM05D000021 ORTHO05D000010 1.6e-07 61.2 106 40.6
Sabra11G0083000 Salix brachista HOM05D000021 ORTHO05D000010 1.6e-07 61.2 106 40.6
CSS0011694 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 2.1e-07 60.8 96 30.2
Manes.07G127908 Manihot esculenta HOM05D000021 ORTHO05D000010 2.1e-07 60.8 100 34.0
Psat1g119400 Pisum sativum HOM05D000021 ORTHO05D000010 2.1e-07 60.8 99 35.4
Psat2g034200 Pisum sativum HOM05D000021 ORTHO05D000010 2.1e-07 60.8 100 41.0
QL04p020653 Quercus lobata HOM05D000021 ORTHO05D000010 2.1e-07 60.8 100 37.0
Sed0017576 Sechium edule HOM05D000021 ORTHO05D000010 2.1e-07 60.8 99 34.3
Cc00_g22380 Coffea canephora HOM05D000021 ORTHO05D000010 2.7e-07 60.5 102 31.4
Glyma.02G256100 Glycine max HOM05D000021 ORTHO05D000010 2.7e-07 60.5 103 57.3
MD00G1063000 Malus domestica HOM05D000021 ORTHO05D000010 2.7e-07 60.5 100 36.0
MD07G1218900 Malus domestica HOM05D000021 ORTHO05D000010 2.7e-07 60.5 100 40.0
MD11G1104000 Malus domestica HOM05D000021 ORTHO05D000010 2.7e-07 60.5 100 38.0
Manes.07G016800 Manihot esculenta HOM05D000021 ORTHO05D000010 2.7e-07 60.5 100 34.0
Nn8g39587 Nelumbo nucifera HOM05D000021 ORTHO05D000010 2.7e-07 60.5 99 31.3
QL01p037945 Quercus lobata HOM05D000021 ORTHO05D000010 2.7e-07 60.5 99 49.5
ECA238G3002 Erigeron canadensis HOM05D000021 ORTHO05D000010 3.6e-07 60.1 87 36.8
Gorai.009G436300 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.6e-07 60.1 105 51.4
HanXRQChr15g0490931 Helianthus annuus HOM05D000021 ORTHO05D000010 3.6e-07 60.1 99 51.5
Nitab4.5_0000010g0270 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.6e-07 60.1 98 53.1
TWI74G0512 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 3.6e-07 60.1 99 43.4
CDE04G3695 Ceratophyllum demersum HOM05D000021 ORTHO05D000010 4.6e-07 59.7 103 53.4
Manes.08G087600 Manihot esculenta HOM05D000021 ORTHO05D000010 4.6e-07 59.7 99 41.4
Manes.08G090750 Manihot esculenta HOM05D000021 ORTHO05D000010 4.6e-07 59.7 99 40.4
TPR.G337 Trifolium pratense HOM05D000021 ORTHO05D000010 4.6e-07 59.7 88 40.9
CAN.G843.22 Capsicum annuum HOM05D000021 ORTHO05D000010 6.1e-07 59.3 100 44.0
CiPaw.13G078900 Carya illinoinensis HOM05D000021 ORTHO05D000010 6.1e-07 59.3 99 43.4
Ca_25055_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 6.1e-07 59.3 93 35.5
Haze_17211 Corylus avellana HOM05D000021 ORTHO05D000010 6.1e-07 59.3 106 48.1
Lsat_1_v5_gn_2_120861 Lactuca sativa HOM05D000021 ORTHO05D000010 6.1e-07 59.3 93 34.4
MD04G1157600 Malus domestica HOM05D000021 ORTHO05D000010 6.1e-07 59.3 101 35.6
QL04p035482 Quercus lobata HOM05D000021 ORTHO05D000010 6.1e-07 59.3 99 46.5
QL05p040370 Quercus lobata HOM05D000021 ORTHO05D000010 6.1e-07 59.3 99 43.4
RcHm_v2.0_Chr1g0369931 Rosa chinensis HOM05D000021 ORTHO05D000010 6.1e-07 59.3 93 52.7
RcHm_v2.0_Chr3g0463441 Rosa chinensis HOM05D000021 ORTHO05D000010 6.1e-07 59.3 99 35.4
Solyc06g076910.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 6.1e-07 59.3 96 51.0
TAR633G2223 Trochodendron aralioides HOM05D000021 ORTHO05D000010 6.1e-07 59.3 83 56.6
MD05G1061600 Malus domestica HOM05D000021 ORTHO05D000010 7.9e-07 58.9 100 35.0
Nn1g08503 Nelumbo nucifera HOM05D000021 ORTHO05D000010 7.9e-07 58.9 96 37.5
PSO063G2283 Papaver somniferum HOM05D000021 ORTHO05D000010 7.9e-07 58.9 104 54.8
QL01p037912 Quercus lobata HOM05D000021 ORTHO05D000010 7.9e-07 58.9 99 45.5
Cc01_g14110 Coffea canephora HOM05D000021 ORTHO05D000010 1.0e-06 58.5 99 43.4
MD07G1220100 Malus domestica HOM05D000021 ORTHO05D000010 1.0e-06 58.5 100 37.0
Manes.08G090000 Manihot esculenta HOM05D000021 ORTHO05D000010 1.0e-06 58.5 99 50.5
Manes.08G090800 Manihot esculenta HOM05D000021 ORTHO05D000010 1.0e-06 58.5 99 39.4
Sopen06g033300 Solanum pennellii HOM05D000021 ORTHO05D000010 1.0e-06 58.5 95 51.6
Thecc.05G018400 Theobroma cacao HOM05D000021 ORTHO05D000010 1.0e-06 58.5 99 48.5
TAR473G0002 Trochodendron aralioides HOM05D000021 ORTHO05D000010 1.0e-06 58.5 100 45.0
Ciclev10013815m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.3e-06 58.2 95 32.6
Psat2g034000 Pisum sativum HOM05D000021 ORTHO05D000010 1.3e-06 58.2 100 40.0
Dinv22122 Davidia involucrata HOM05D000021 ORTHO05D012915 1.8e-06 57.8 110 46.4
Dinv22125 Davidia involucrata HOM05D003883 ORTHO05D004605 1.8e-06 57.8 96 31.2
FAN01G1891 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.8e-06 57.8 98 39.8
Glyma.14G060400 Glycine max HOM05D000021 ORTHO05D000010 1.8e-06 57.8 45 53.3
Medtr5g082270 Medicago truncatula HOM05D000021 ORTHO05D000010 1.8e-06 57.8 45 57.8
Medtr5g082460 Medicago truncatula HOM05D000021 ORTHO05D000010 1.8e-06 57.8 100 55.0
Nn2g11444 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.8e-06 57.8 100 39.0
Peaxi162Scf00540g00523 Petunia axillaris HOM05D000021 ORTHO05D000010 1.8e-06 57.8 99 53.5
QL10p043197 Quercus lobata HOM05D000021 ORTHO05D000010 1.8e-06 57.8 99 40.4
ECA247G2412 Erigeron canadensis HOM05D000021 ORTHO05D000010 2.3e-06 57.4 94 36.2
HanXRQChr07g0199621 Helianthus annuus HOM05D000021 ORTHO05D000010 2.3e-06 57.4 99 34.3
HanXRQChr07g0199631 Helianthus annuus HOM05D000021 ORTHO05D000010 2.3e-06 57.4 87 35.6
Nn2g13677 Nelumbo nucifera HOM05D000021 ORTHO05D000010 2.3e-06 57.4 99 41.4
Oeu001631.1 Olea europaea HOM05D000021 ORTHO05D000010 2.3e-06 57.4 99 47.5
RcHm_v2.0_Chr1g0356561 Rosa chinensis HOM05D000021 ORTHO05D000010 2.3e-06 57.4 99 36.4
FvH4_7g06520 Fragaria vesca HOM05D000021 ORTHO05D000010 3.0e-06 57.0 100 36.0
FAN06G4571 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.0e-06 57.0 104 38.5
Manes.18G127200 Manihot esculenta HOM05D000021 ORTHO05D000010 3.0e-06 57.0 99 38.4
RcHm_v2.0_Chr1g0353721 Rosa chinensis HOM05D000021 ORTHO05D000010 3.0e-06 57.0 100 38.0
TPR.G40196 Trifolium pratense HOM05D000021 ORTHO05D000010 3.0e-06 57.0 35 71.4
TAR633G2674 Trochodendron aralioides HOM05D000021 ORTHO05D000010 3.0e-06 57.0 99 36.4
CSS0038316 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.9e-06 56.6 92 38.0
AUR62011366 Chenopodium quinoa HOM05D000021 ORTHO05D000010 3.9e-06 56.6 100 36.0
MD04G1158000 Malus domestica HOM05D000021 ORTHO05D000010 3.9e-06 56.6 99 35.4
Nitab4.5_0011052g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.9e-06 56.6 99 51.5
QL04p031122 Quercus lobata HOM05D000021 ORTHO05D000010 3.9e-06 56.6 92 37.0
PGSC0003DMG400030443 Solanum tuberosum HOM05D000021 ORTHO05D000010 3.9e-06 56.6 99 49.5
CiPaw.05G135900 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.1e-06 56.2 111 29.7
AUR62011364 Chenopodium quinoa HOM05D005785 ORTHO05D007962 5.1e-06 56.2 110 36.4
Thhalv10028397m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 5.1e-06 56.2 93 50.5
FvH4_7g24151 Fragaria vesca HOM05D000021 ORTHO05D000010 5.1e-06 56.2 98 39.8
FAN03G0765 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.1e-06 56.2 100 36.0
FAN10G3400 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.1e-06 56.2 98 39.8
HanXRQChr07g0196941 Helianthus annuus HOM05D000021 ORTHO05D000010 5.1e-06 56.2 92 33.7
HanXRQChr07g0199601 Helianthus annuus HOM05D000021 ORTHO05D000010 5.1e-06 56.2 87 35.6
Lsat_1_v5_gn_2_120441 Lactuca sativa HOM05D000021 ORTHO05D000010 5.1e-06 56.2 107 29.9
Manes.10G134900 Manihot esculenta HOM05D000021 ORTHO05D000010 5.1e-06 56.2 101 33.7
Oeu001613.1 Olea europaea HOM05D000021 ORTHO05D000010 5.1e-06 56.2 91 35.2
vmacro20246 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 5.1e-06 56.2 99 42.4
A10p08940 Brassica napus HOM05D000021 ORTHO05D000010 6.7e-06 55.8 93 55.9
BraA10t42975Z Brassica rapa HOM05D000021 ORTHO05D000010 6.7e-06 55.8 93 55.9
FAN10G0830 Fragaria x ananassa HOM05D000021 ORTHO05D000010 6.7e-06 55.8 93 53.8
Glyma.09G217200 Glycine max HOM05D000021 ORTHO05D000010 6.7e-06 55.8 100 33.0
MD07G1218700 Malus domestica HOM05D000021 ORTHO05D000010 6.7e-06 55.8 100 39.0
Medtr6g036840 Medicago truncatula HOM05D000021 ORTHO05D000010 6.7e-06 55.8 99 32.3
Medtr7g078340 Medicago truncatula HOM05D000021 ORTHO05D000010 6.7e-06 55.8 100 57.0
BcaC05g28477 Brassica carinata HOM05D000021 ORTHO05D000010 8.7e-06 55.5 93 45.2
CARHR192330 Cardamine hirsuta HOM05D000021 ORTHO05D000010 8.7e-06 55.5 93 44.1
CARHR262980 Cardamine hirsuta HOM05D000021 ORTHO05D000010 8.7e-06 55.5 93 33.3
Ciclev10033293m.g Citrus clementina HOM05D000021 ORTHO05D000010 8.7e-06 55.5 97 29.9
ECA238G3401 Erigeron canadensis HOM05D000021 ORTHO05D000010 8.7e-06 55.5 99 32.3
Gohir.A05G316500 Gossypium hirsutum HOM05D000021 ORTHO05D000010 8.7e-06 55.5 96 34.4
Gohir.D05G317800 Gossypium hirsutum HOM05D000021 ORTHO05D000010 8.7e-06 55.5 96 34.4
Gorai.009G340400 Gossypium raimondii HOM05D000021 ORTHO05D000010 8.7e-06 55.5 96 34.4
HanXRQChr06g0165281 Helianthus annuus HOM05D000021 ORTHO05D000010 8.7e-06 55.5 100 31.0
MD05G1075900 Malus domestica HOM05D000021 ORTHO05D000010 8.7e-06 55.5 94 34.0
Medtr5g082420 Medicago truncatula HOM05D000021 ORTHO05D000010 8.7e-06 55.5 37 64.9
TWI74G0925 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 8.7e-06 55.5 99 40.4


User provided reference genes

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