Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 3.0e-99 365.2 182 100.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 4.3e-98 361.3 180 99.4
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 3.9e-91 338.2 180 92.8
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 4.4e-90 334.7 180 91.7
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 9.7e-90 333.6 182 89.0
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.3e-89 333.2 180 88.9
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.3e-89 333.2 180 88.9
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.8e-89 332.0 182 90.1
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 4.8e-89 331.3 180 90.6
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.8e-88 329.3 182 90.1
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.8e-88 329.3 182 87.4
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.4e-88 328.9 182 87.9
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.4e-88 328.9 182 90.1
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.4e-88 328.9 180 87.8
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.1e-88 328.6 182 87.4
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.1e-88 328.6 180 88.9
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 3.1e-88 328.6 180 88.9
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 4.1e-88 328.2 182 87.9
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 5.3e-88 327.8 180 89.4
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 7.0e-88 327.4 180 87.8
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 7.0e-88 327.4 180 87.8
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 9.1e-88 327.0 182 87.4
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 9.1e-88 327.0 179 89.9
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.2e-87 326.6 179 90.5
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-87 326.6 181 89.0
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.6e-87 326.2 182 88.5
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.6e-87 325.5 180 89.4
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.0e-86 323.6 179 88.8
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.3e-86 323.2 180 87.8
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.7e-86 322.8 182 86.8
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.7e-86 322.8 182 86.8
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.2e-86 322.4 182 86.3
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.2e-86 322.4 183 88.0
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.8e-86 321.6 180 87.2
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 3.8e-86 321.6 180 86.7
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.5e-86 320.5 180 86.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.1e-85 320.1 180 87.8
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.1e-85 320.1 182 86.3
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.5e-85 319.7 182 85.7
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.5e-85 319.7 182 87.4
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.5e-85 319.7 180 86.1
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.9e-85 319.3 182 86.3
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 2.5e-85 318.9 182 86.3
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.2e-85 318.5 182 86.8
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.2e-85 318.2 182 83.0
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 5.5e-85 317.8 178 87.6
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 7.2e-85 317.4 182 85.7
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 7.2e-85 317.4 182 84.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 2.7e-84 315.5 177 86.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 3.6e-84 315.1 180 83.3
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.6e-84 315.1 180 84.4
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 4.7e-84 314.7 182 81.9
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 6.1e-84 314.3 176 86.4
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 6.1e-84 314.3 182 84.1
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 6.7e-83 310.8 177 85.9
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 6.7e-83 310.8 177 85.9
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.5e-82 309.7 169 90.5
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.0e-82 309.3 177 86.4
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 4.4e-82 308.1 168 89.9
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.4e-82 308.1 182 84.1
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 5.7e-82 307.8 182 84.1
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.7e-82 307.8 177 85.3
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 7.5e-82 307.4 177 84.2
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.5e-82 307.4 182 81.9
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.3e-81 306.6 182 82.4
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.2e-81 305.8 182 81.9
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.8e-81 305.4 178 83.1
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 2.8e-81 305.4 177 84.7
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 2.8e-81 305.4 204 76.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.8e-81 305.4 182 82.4
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.8e-81 305.4 182 82.4
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 81.2
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.7e-81 305.1 180 80.6
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 4.8e-81 304.7 180 80.6
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.3e-81 304.3 171 86.5
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-80 303.5 177 83.6
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.1e-80 303.5 175 83.4
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.4e-80 303.1 177 83.6
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.8e-80 302.8 177 84.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.4e-80 302.4 177 84.2
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.1e-80 302.0 177 82.5
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.1e-80 302.0 168 87.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 4.1e-80 301.6 176 82.4
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 5.3e-80 301.2 177 82.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.3e-80 301.2 175 82.9
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 5.3e-80 301.2 178 82.0
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 7.0e-80 300.8 201 76.6
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 7.0e-80 300.8 168 86.9
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.2e-79 300.1 177 83.6
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.2e-79 300.1 177 83.6
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 4.5e-79 298.1 171 83.6
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 5.9e-79 297.7 178 82.6
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 5.9e-79 297.7 178 82.6
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 5.9e-79 297.7 178 82.6
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 5.9e-79 297.7 178 82.6
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 7.7e-79 297.4 178 82.6
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.7e-78 296.2 182 78.6
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.7e-78 296.2 178 82.0
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.9e-78 295.4 169 85.2
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 5.0e-78 294.7 170 83.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 6.5e-78 294.3 178 82.0
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 6.5e-78 294.3 180 79.4
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 6.5e-78 294.3 182 76.4
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 8.5e-78 293.9 180 80.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.5e-77 292.4 168 85.1
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 3.2e-77 292.0 169 85.8
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 7.2e-77 290.8 170 84.1
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 9.4e-77 290.4 165 83.6
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.2e-76 290.0 180 78.3
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 4.0e-75 285.0 183 78.7
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 4.0e-75 285.0 183 78.7
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 5.2e-75 284.6 178 79.8
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 8.8e-75 283.9 180 79.4
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.2e-74 283.5 169 81.7
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-74 283.5 169 80.5
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.0e-74 282.7 170 82.4
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.0e-74 282.7 157 87.9
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 9.8e-74 280.4 169 79.9
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 2.2e-73 279.3 177 78.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.8e-73 278.9 182 77.5
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.8e-73 278.9 177 76.8
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.1e-72 275.4 178 77.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 5.4e-72 274.6 259 58.7
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 6.5e-70 267.7 169 78.7
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 3.2e-69 265.4 151 86.8
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 5.5e-69 264.6 170 72.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.6e-68 263.1 183 71.0
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 6.1e-68 261.2 180 71.1
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.4e-64 250.0 172 69.8
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.6e-63 246.5 149 81.2
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.3e-62 242.7 180 71.1
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.2e-60 236.9 173 66.5
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.2e-60 236.9 180 62.8
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 6.1e-60 234.6 173 64.2
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 8.3e-49 197.6 134 72.4
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 2.4e-48 196.1 169 54.4
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 4.7e-44 181.8 173 57.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 5.2e-43 178.3 101 89.1
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.0e-38 164.1 103 80.6
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 8.6e-38 161.0 117 72.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 3.4e-34 149.1 75 97.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.4e-34 149.1 75 97.3
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 9.2e-32 141.0 80 85.0
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 3.0e-30 136.0 179 41.9
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 3.0e-30 136.0 169 41.4
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.4e-26 122.5 69 82.6
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 7.8e-23 111.3 209 41.1
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.7e-22 110.2 100 59.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.3e-22 109.8 57 86.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.6e-21 104.4 54 90.7
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 6.9e-19 98.2 63 76.2
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.6e-18 96.3 169 33.7
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.4e-18 95.9 83 62.7
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 8.4e-17 91.3 165 33.9
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 7.9e-15 84.7 90 51.1
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.6e-12 75.9 88 51.1
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-11 73.9 37 94.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.4e-11 73.2 45 75.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 4.0e-11 72.4 51 70.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 4.5e-10 68.9 38 89.5
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 4.9e-09 65.5 55 61.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 6.4e-09 65.1 50 68.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 5.5e-08 62.0 42 71.4
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.2e-07 60.8 42 69.0
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 2.1e-07 60.1 39 76.9
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 2.1e-07 60.1 39 76.9
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 5.1e-06 55.5 44 65.9
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 6.7e-06 55.1 44 65.9


User provided reference genes

Program Settings