Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 8.1e-32 139.8 72 100.0
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 6.5e-29 130.2 69 95.7
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 2.1e-27 125.2 69 92.8
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 1.5e-22 109.0 66 83.3
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 5.8e-22 107.1 67 85.1
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 7.6e-22 106.7 67 83.6
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.0e-21 106.3 66 80.3
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 1.0e-21 106.3 67 82.1
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 1.7e-21 105.5 68 75.0
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 3.8e-21 104.4 66 78.8
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 3.8e-21 104.4 67 83.6
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 3.8e-21 104.4 66 78.8
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 8.4e-21 103.2 66 74.2
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 8.4e-21 103.2 66 77.3
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 1.1e-20 102.8 66 78.8
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 1.4e-20 102.4 66 75.8
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 1.9e-20 102.1 67 73.1
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 2.5e-20 101.7 66 75.8
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 3.2e-20 101.3 66 75.8
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 5.5e-20 100.5 66 77.3
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 7.1e-20 100.1 66 75.8
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 7.1e-20 100.1 66 72.7
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 9.3e-20 99.8 66 75.8
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 9.3e-20 99.8 69 68.1
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 1.2e-19 99.4 66 72.7
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 1.2e-19 99.4 66 72.7
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 2.1e-19 98.6 66 72.7
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 2.1e-19 98.6 66 71.2
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 2.1e-19 98.6 64 73.4
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 2.1e-19 98.6 64 73.4
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.7e-19 98.2 64 70.3
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 2.7e-19 98.2 66 69.7
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 3.5e-19 97.8 64 78.1
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 3.5e-19 97.8 64 78.1
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 3.5e-19 97.8 64 78.1
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 3.5e-19 97.8 64 71.9
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 3.5e-19 97.8 64 70.3
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 3.5e-19 97.8 64 71.9
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 3.5e-19 97.8 66 69.7
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 4.6e-19 97.4 66 68.2
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 4.6e-19 97.4 66 72.7
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 4.6e-19 97.4 64 75.0
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 7.9e-19 96.7 66 71.2
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 7.9e-19 96.7 64 71.9
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 3.9e-18 94.4 61 73.8
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 6.7e-18 93.6 65 72.3
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.5e-17 92.4 64 68.8
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 1.9e-17 92.0 66 63.6
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 2.5e-17 91.7 66 65.2
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 5.7e-17 90.5 67 61.2
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 5.7e-17 90.5 62 67.7
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 9.7e-17 89.7 66 65.2
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 1.3e-16 89.4 66 65.2
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 1.3e-16 89.4 64 68.8
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 1.3e-16 89.4 68 63.2
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 1.6e-16 89.0 66 63.6
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 2.2e-16 88.6 66 62.1
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 4.8e-16 87.4 64 67.2
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 4.8e-16 87.4 89 53.9
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 4.8e-16 87.4 64 67.2
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 6.3e-16 87.0 64 65.6
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 8.2e-16 86.7 67 65.7
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 1.1e-15 86.3 64 65.6
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 1.4e-15 85.9 66 62.1
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 1.8e-15 85.5 64 64.1
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 1.8e-15 85.5 64 64.1
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 2.4e-15 85.1 66 60.6
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 3.1e-15 84.7 64 62.5
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 4.1e-15 84.3 62 64.5
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 5.3e-15 84.0 64 62.5
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 5.3e-15 84.0 64 62.5
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 5.3e-15 84.0 64 62.5
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 5.3e-15 84.0 64 62.5
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 6.9e-15 83.6 67 64.2
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 6.9e-15 83.6 65 58.5
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 1.2e-14 82.8 64 60.9
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 2.0e-14 82.0 65 58.5
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 2.6e-14 81.6 65 56.9
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.6e-14 81.6 65 56.9
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.6e-14 81.6 65 56.9
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.6e-14 81.6 65 56.9
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.6e-14 81.6 65 56.9
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 2.6e-14 81.6 69 59.4
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 3.4e-14 81.3 62 59.7
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 2.2e-13 78.6 45 80.0
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 2.9e-13 78.2 59 69.5
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 3.8e-13 77.8 47 76.6
arahy.Tifrunner.gnm1.ann1.K2ZES1 Arachis hypogaea HOM05D008645 ORTHO05D009556 8.5e-13 76.6 43 90.7
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 9.4e-12 73.2 74 51.4
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 3.6e-11 71.2 66 51.5
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 1.0e-10 69.7 65 52.3
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 2.3e-10 68.6 62 54.8
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 2.3e-10 68.6 60 56.7
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 2.0e-09 65.5 44 68.2
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 8.2e-08 60.1 64 45.3
Cpa.g.sc11.95 Carica papaya HOM05D007530 ORTHO05D009556 8.2e-08 60.1 41 70.7
CSS0006801 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 1.4e-07 59.3 41 70.7
vmacro20294 Vaccinium macrocarpon HOM05D007530 ORTHO05D009556 1.8e-07 58.9 42 66.7
CAN.G243.17 Capsicum annuum HOM05D007530 ORTHO05D009556 3.4e-06 54.7 41 61.0
Lj1g0004890 Lotus japonicus HOM05D007530 ORTHO05D009556 3.4e-06 54.7 40 65.0
PRCOL_00001270 Prasinoderma coloniale HOM05D007530 ORTHO05D009556 4.5e-06 54.3 64 45.3
Peaxi162Scf00014g00124 Petunia axillaris HOM05D007530 ORTHO05D009556 5.9e-06 53.9 41 63.4
Zm00001eb077870 Zea mays HOM05D007530 ORTHO05D009556 5.9e-06 53.9 37 67.6


User provided reference genes

Program Settings