Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 3.9e-117 424.9 223 100.0
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.6e-54 216.9 201 65.2
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 5.6e-47 191.8 215 53.5
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 3.4e-44 182.6 226 54.0
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.9e-44 181.0 196 56.1
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.9e-44 181.0 196 56.1
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 9.9e-44 181.0 210 53.8
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 2.2e-43 179.9 228 50.4
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 4.9e-43 178.7 208 53.4
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 6.4e-43 178.3 228 51.8
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.2e-42 174.5 223 52.0
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 4.6e-41 172.2 226 50.4
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.0e-40 171.0 198 55.1
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 7.1e-34 148.3 197 46.7
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 4.6e-33 145.6 224 45.5
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 3.9e-32 142.5 216 47.2
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 6.6e-32 141.7 195 47.7
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 8.7e-32 141.4 214 41.6
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 8.7e-32 141.4 203 44.3
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 1.1e-31 141.0 213 45.1
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 1.9e-31 140.2 216 44.0
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.5e-31 139.8 201 44.3
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.3e-31 139.0 223 44.4
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 7.3e-31 138.3 195 46.7
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 1.3e-30 137.5 212 43.9
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 2.8e-30 136.3 224 42.4
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 2.8e-30 136.3 226 42.9
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 3.6e-30 136.0 220 43.6
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 3.6e-30 136.0 220 43.6
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 3.6e-30 136.0 212 43.9
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 6.2e-30 135.2 217 43.3
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 8.1e-30 134.8 220 41.8
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 1.1e-29 134.4 225 40.9
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.4e-29 134.0 212 42.9
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.4e-29 134.0 182 48.4
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.8e-29 133.7 203 44.3
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 3.1e-29 132.9 222 41.9
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 5.3e-29 132.1 202 44.6
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 5.3e-29 132.1 206 45.6
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 5.3e-29 132.1 205 43.9
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.9e-29 131.7 193 42.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 6.9e-29 131.7 215 40.9
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 6.9e-29 131.7 209 43.5
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 6.9e-29 131.7 199 45.2
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.0e-28 130.2 219 43.8
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 3.4e-28 129.4 221 42.5
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 4.5e-28 129.0 205 41.5
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 5.8e-28 128.6 186 44.6
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.3e-27 127.5 196 41.8
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 1.7e-27 127.1 222 41.9
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.2e-27 126.7 210 41.0
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 2.2e-27 126.7 235 37.4
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 2.9e-27 126.3 220 43.2
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 4.9e-27 125.6 213 42.7
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 6.4e-27 125.2 219 40.6
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.4e-26 124.0 222 41.9
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.9e-26 123.6 222 41.9
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 3.2e-26 122.9 206 43.7
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 3.2e-26 122.9 189 41.8
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 3.2e-26 122.9 195 44.1
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 4.2e-26 122.5 193 45.1
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 5.4e-26 122.1 189 44.4
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 5.4e-26 122.1 201 40.3
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 9.3e-26 121.3 196 42.9
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 9.3e-26 121.3 224 40.2
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 9.3e-26 121.3 196 42.3
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 9.3e-26 121.3 214 39.7
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-25 120.9 216 42.1
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 2.1e-25 120.2 216 40.7
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 3.5e-25 119.4 193 42.0
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.5e-25 119.4 202 41.1
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 4.6e-25 119.0 200 41.5
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 4.6e-25 119.0 212 39.6
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.6e-25 119.0 179 43.6
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 6.0e-25 118.6 189 42.9
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 7.9e-25 118.2 173 46.2
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 7.9e-25 118.2 169 47.9
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 7.9e-25 118.2 192 40.6
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.8e-24 117.1 196 43.9
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.8e-24 117.1 200 40.5
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 3.0e-24 116.3 203 40.4
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 3.0e-24 116.3 200 41.0
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 3.0e-24 116.3 181 42.0
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 3.9e-24 115.9 195 41.0
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 3.9e-24 115.9 190 40.0
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 5.1e-24 115.5 179 42.5
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 5.1e-24 115.5 215 37.7
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 6.7e-24 115.2 179 42.5
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 6.7e-24 115.2 179 43.0
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 6.7e-24 115.2 239 37.7
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 8.7e-24 114.8 196 41.8
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.7e-24 114.8 179 41.9
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 8.7e-24 114.8 181 40.9
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 1.1e-23 114.4 213 39.0
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 1.5e-23 114.0 200 39.5
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 2.5e-23 113.2 264 33.3
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 2.5e-23 113.2 179 43.0
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 9.6e-23 111.3 178 41.0
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.6e-23 111.3 106 58.5
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.3e-22 110.9 163 46.6
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 1.3e-22 110.9 199 41.2
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 3.6e-22 109.4 218 35.8
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 2.4e-21 106.7 202 40.1
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 3.1e-21 106.3 202 37.6
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.3e-21 105.5 186 40.3
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 9.0e-21 104.8 250 35.6
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 3.4e-20 102.8 227 34.4
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.8e-20 102.1 192 35.9
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.4e-19 98.6 178 39.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 4.2e-18 95.9 209 34.9
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 5.1e-16 89.0 254 31.5
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.1e-13 81.3 88 47.7
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 2.4e-13 80.1 86 52.3
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 5.3e-13 79.0 220 33.2
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 9.0e-13 78.2 76 50.0
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 2.1e-09 67.0 75 44.0
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 7.9e-09 65.1 60 50.0
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 1.5e-07 60.8 45 60.0
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 7.4e-07 58.5 195 27.2
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 7.4e-07 58.5 57 50.9
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 2.1e-06 57.0 286 25.9
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 3.7e-06 56.2 216 27.8


User provided reference genes

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